Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Forward (+)

28258786 .. 28260733

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCGTTTCCCAATCTATTAGATTATCCTTTAACTGATTTTCGGTCGTTGTTCTTCAATTTTATAGTTCCGTCGACGATGAAACCGAGCGAAGATCATGGGGCCTACAGGAAGATCTTACTGGCGTCGATCTCAGCCATGGTGGCGGAGACGACGACGTTTCCGATAGACCTGACAAAGACTAGGCTTCAGCTGCACGGCGAGTCGGTGTCGGTGGGATCGGCTCGGCCCACCAACGGGTTCCTAGTGGCCTCTGAGATCGTGCGGCAGCAAGGCCCTCTCGGGCTGTACAAGGGATTGTCTCCTGCACTTCTCAGACACCTCTTCTACACGCCAATTCGGATCGTCGGGTACGAGCACCTCAGAAGCTCACTGAAAACCGATGGTGGTTCCCTCTCTCTCCCCGCTAAAGCTCTCTCCGGTGGGCTTTCCGGCGTCGTTGCTCAGTTGGTGGCAAGCCCCGCAGATCTTGTTAAGGTGAGGATGCAAGCAGATGGTCGTATGTTGAGGCAAGGCCTTCAACCTAGATACTCAGGGTGCTTTGATGCTTTAAACAAGATCATCCGATCAGAGGGCATTGGAGGACTTTGGAAAGGTGTTTTCCCTAATGTCCAAAGAGCATTCTTGGTGAACATGGGAGAATTGGCCTGTTATGATCAGGCGAAACATTTTGTTATCAAAAATCGAATTTCGGAGGATAACATATATGCCCACACTTTGGCATCAATCATGTCAGGCCTTTCAGCAACTGCTTTGAGTTGTCCAGCTGATGTGGTAAAGACGAGAATGATGAACCAGTCTAGAAGCAAACAAGGGAAGATTATGTACAACAATTCCTATGATTGTTTGGTGAAGACTGTCAAAGTTGAGGGTTTAAGAGCATTGTGGAAAGGGTTCATACCTACATGGGCAAGGCTTGGTCCTTGGCAATTTGTGTTTTGGGTCTCATACGAGAAGTTTAGACAAATTGCAGGGTTCTCTTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

330

Amino Acids

36.44

Weight (kDa)

9.81

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	718
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	4 cut(s)	146, 265, 405, 462
AclWI	GGATC	2 cut(s)	226, 350
AcsI	RAATTY	1 cut(s)	687
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	125, 435
AfaI	GTAC	3 cut(s)	290, 353, 827
AfiI	CCNNNNNNNGG	4 cut(s)	236, 237, 571, 718
AgsI	TTSAA	2 cut(s)	58, 521
AluBI	AGCT	4 cut(s)	193, 369, 413, 767
AluI	AGCT	4 cut(s)	193, 369, 413, 767
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	3 cut(s)	143, 306, 949
AlwI	GGATC	2 cut(s)	226, 350
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	7 cut(s)	102, 227, 249, 274, 514, 645, 736
ApeKI	GCWGC	2 cut(s)	193, 268
ApoI	RAATTY	1 cut(s)	687
Asp700I	GAANNNNTTC	1 cut(s)	893
AspS9I	GGNCC	4 cut(s)	102, 228, 275, 920
AsuHPI	GGTGA	3 cut(s)	490, 640, 862
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	920
BarI	GAAGNNNNNNTAC	2 cut(s)	809, 841
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	180, 280
BccI	CCATC	2 cut(s)	377, 488
BceAI	ACGGC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	3 cut(s)	143, 306, 949
BfaI	CTAG	4 cut(s)	183, 245, 525, 801
BfmI	CTRYAG	1 cut(s)	106
BglI	GCCNNNNNGGC	1 cut(s)	143
BglII	AGATCT	2 cut(s)	114, 466
BisI	GCNGC	3 cut(s)	194, 266, 269
BlsI	GCNGC	3 cut(s)	195, 267, 270
Bme18I	GGWCC	1 cut(s)	920
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	4 cut(s)	102, 228, 275, 920
BmiI	GGNNCC	3 cut(s)	103, 242, 391
BmsI	GCATC	3 cut(s)	474, 535, 731
BpiI	GAAGAC	1 cut(s)	860
BsaHI	GRCGYC	2 cut(s)	125, 435
BsaI	GGTCTC	1 cut(s)	949
BsaJI	CCNNGG	2 cut(s)	138, 923
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 237, 571, 718
Bse1I	ACTGG	2 cut(s)	126, 796
BseDI	CCNNGG	2 cut(s)	138, 923
BseGI	GGATG	2 cut(s)	489, 561
BseLI	CCNNNNNNNGG	4 cut(s)	236, 237, 571, 718
BseMII	CTCAG	6 cut(s)	147, 246, 328, 376, 458, 546
BseNI	ACTGG	2 cut(s)	126, 796
BseXI	GCAGC	2 cut(s)	180, 280
BsgI	GTGCAG	2 cut(s)	179, 291
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	7 cut(s)	104, 229, 251, 276, 516, 647, 738
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	420, 432
BslI	CCNNNNNNNGG	4 cut(s)	236, 237, 571, 718
BsmAI	GTCTC	3 cut(s)	143, 306, 949
BsmBI	CGTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	7 cut(s)	104, 229, 251, 276, 516, 647, 738
Bso31I	GGTCTC	1 cut(s)	949
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp1407I	TGTACA	2 cut(s)	288, 825
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	146, 265, 405, 462
BspANI	GGCC	7 cut(s)	104, 229, 251, 276, 516, 647, 738
BspCNI	CTCAG	6 cut(s)	146, 247, 327, 375, 457, 545
BspLI	GGNNCC	3 cut(s)	103, 242, 391
BspPI	GGATC	2 cut(s)	226, 350
BspTNI	GGTCTC	1 cut(s)	949
BsrGI	TGTACA	2 cut(s)	288, 825
BsrI	ACTGG	2 cut(s)	126, 796
BssECI	CCNNGG	2 cut(s)	138, 923
BssNI	GRCGYC	2 cut(s)	125, 435
BssT1I	CCWWGG	2 cut(s)	138, 923
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	2 cut(s)	329, 985
BstACI	GRCGYC	2 cut(s)	125, 435
BstAUI	TGTACA	2 cut(s)	288, 825
BstC8I	GCNNGC	2 cut(s)	457, 489
BstDEI	CTNAG	6 cut(s)	133, 255, 314, 362, 444, 532
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	489, 561
BstMAI	GTCTC	3 cut(s)	143, 306, 949
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 193, 461
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	180, 280
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	2 cut(s)	114, 466
BstYI	RGATCY	2 cut(s)	114, 466
BsuRI	GGCC	7 cut(s)	104, 229, 251, 276, 516, 647, 738
BtgI	CCRYGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	489, 561
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	2 cut(s)	457, 489
CaiI	CAGNNNCTG	1 cut(s)	749
Cfr13I	GGNCC	4 cut(s)	102, 228, 275, 920
CseI	GACGC	2 cut(s)	114, 424
Csp6I	GTAC	3 cut(s)	289, 352, 826
CviAII	CATG	5 cut(s)	98, 139, 634, 730, 906
CviQI	GTAC	3 cut(s)	289, 352, 826
DdeI	CTNAG	6 cut(s)	133, 255, 314, 362, 444, 532
DraI	TTTAAA	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	329, 985
EarI	CTCTTC	2 cut(s)	329, 985
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	2 cut(s)	138, 923
Eco147I	AGGCCT	2 cut(s)	516, 738
Eco31I	GGTCTC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	920
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	281
EcoO109I	RGGNCCY	2 cut(s)	102, 275
EcoT14I	CCWWGG	2 cut(s)	138, 923
ErhI	CCWWGG	2 cut(s)	138, 923
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	5 cut(s)	101, 142, 637, 733, 909
FatI	CATG	5 cut(s)	97, 138, 633, 729, 905
FauI	CCCGC	2 cut(s)	412, 469
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	3 cut(s)	194, 266, 269
FokI	GGATG	2 cut(s)	496, 548
Fsp4HI	GCNGC	3 cut(s)	194, 266, 269
FspBI	CTAG	4 cut(s)	183, 245, 525, 801
GluI	GCNGC	3 cut(s)	194, 266, 269
HaeIII	GGCC	7 cut(s)	104, 229, 251, 276, 516, 647, 738
HapII	CCGG	2 cut(s)	420, 432
HgaI	GACGC	2 cut(s)	114, 424
Hin1I	GRCGYC	2 cut(s)	125, 435
Hin1II	CATG	5 cut(s)	101, 142, 637, 733, 909
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	420, 432
HphI	GGTGA	3 cut(s)	490, 640, 862
Hpy166II	GTNNAC	2 cut(s)	75, 631
Hpy188I	TCNGA	9 cut(s)	165, 256, 317, 342, 365, 566, 571, 694, 989
Hpy188III	TCNNGA	1 cut(s)	801
Hpy8I	GTNNAC	2 cut(s)	75, 631
Hpy99I	CGWCG	7 cut(s)	76, 79, 130, 157, 160, 350, 440
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	196, 308, 487, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 193, 461
HpyF3I	CTNAG	6 cut(s)	133, 255, 314, 362, 444, 532
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	2 cut(s)	125, 435
Hsp92II	CATG	5 cut(s)	101, 142, 637, 733, 909
Ksp22I	TGATCA	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	180, 280
LweI	GCATC	3 cut(s)	474, 535, 731
MaeI	CTAG	4 cut(s)	183, 245, 525, 801
MaeII	ACGT	1 cut(s)	158
MboII	GAAGA	7 cut(s)	46, 104, 124, 316, 829, 865, 972
MflI	RGATCY	2 cut(s)	114, 466
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	7 cut(s)	58, 336, 641, 687, 832, 929, 966
MlyI	GAGTC	1 cut(s)	212
MroXI	GAANNNNTTC	1 cut(s)	893
MseI	TTAA	4 cut(s)	32, 474, 551, 875
MspA1I	CMGCKG	2 cut(s)	193, 767
MspI	CCGG	2 cut(s)	420, 432
Mva1269I	GAATGC	1 cut(s)	620
MwoI	GCNNNNNNNGC	3 cut(s)	143, 193, 461
NcoI	CCATGG	1 cut(s)	138
NlaIII	CATG	5 cut(s)	101, 142, 637, 733, 909
NlaIV	GGNNCC	3 cut(s)	103, 242, 391
NmeAIII	GCCGAG	1 cut(s)	205
PceI	AGGCCT	2 cut(s)	516, 738
PcsI	WCGNNNNNNNCGW	3 cut(s)	83, 161, 351
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	893
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	3 cut(s)	195, 267, 270
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PspN4I	GGNNCC	3 cut(s)	103, 242, 391
PspPI	GGNCC	4 cut(s)	102, 228, 275, 920
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	114, 466
PvuII	CAGCTG	2 cut(s)	193, 767
RsaI	GTAC	3 cut(s)	290, 353, 827
RsaNI	GTAC	3 cut(s)	289, 352, 826
SalI	GTCGAC	1 cut(s)	73
SaqAI	TTAA	4 cut(s)	32, 474, 551, 875
SatI	GCNGC	3 cut(s)	194, 266, 269
Sau96I	GGNCC	4 cut(s)	102, 228, 275, 920
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	3 cut(s)	474, 535, 731
SfcI	CTRYAG	1 cut(s)	106
SgrDI	CGTCGACG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	920
Sse9I	AATT	7 cut(s)	58, 336, 641, 687, 832, 929, 966
SseBI	AGGCCT	2 cut(s)	516, 738
SsiI	CCGC	4 cut(s)	146, 265, 405, 462
SspMI	CTAG	4 cut(s)	183, 245, 525, 801
StuI	AGGCCT	2 cut(s)	516, 738
StyI	CCWWGG	2 cut(s)	138, 923
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	74, 128, 685
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	58, 336, 641, 687, 832, 929, 966
TatI	WGTACW	2 cut(s)	288, 825
TauI	GCSGC	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	32, 474, 551, 875
Tru9I	TTAA	4 cut(s)	32, 474, 551, 875
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	2 cut(s)	193, 268
TspDTI	ATGAA	3 cut(s)	95, 806, 886
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	920
XapI	RAATTY	1 cut(s)	687
XbaI	TCTAGA	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	4 cut(s)	183, 245, 525, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.