Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Reverse (-)

22067469 .. 22069223

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAACCGAGCCAAGAGCACGGGCGTCAACACGGCCCCACAAAGATCTTACTGACCTCGATCTCAGCAATGGTGGCCGAAACGATGACGTTTCCAATCGACCTCATGAAGACGAGGCTCCAGCTCCACGGCGAGTCCCGGTCTCTCGGCTCGATCCGGCCCACCAACGCGTTCCGGGTGGCCTCGGAAATCGTGCGCCGGGAAGGCCCTCTGGGACTGTACAAGGGTTTGTCGCCGGCGATTCTCAGGCACCTTTTTTACACGCCTGTTCGTATCGTCGGCTACGAGCACCTCAGAAACTCTTTGAAAACCGATGGTGGGTCCCTCTCTCTCGGGGCTAAAGCCCTCTACGGCGGACTCTCCGGCGTCATTGCTCAGCTTTTTACTGTTGCCACTGAAAAATGCGAGCTTTTTCGAATTGGGAATGGAAAAGATGAATGCTTGAGCTATGTGTGTGGTTCCTTGTACTGGAGTGATCAACCGTCTGTAGTACAGTTGGTGGCAAGCCCGGCAGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCGTTTTGTGAGCCAAGGCTTTCAACCTAGGTACTCGGGGTGTTTCGATGCTTTAAACAAGATCGCCCGAGCAGAAGGTGTTGGTGGACTTTGGAAAGGGGTTTTCCCTAATGTTCAAAGAGCTTTCTTAGTAAACATGGGAGAATTAGCTTGTTACGATCATGCAAAACGTTTTGTAATCAATAATCAGATTTCTGAGGATAATATATATGCCCACACATTAGCATCAATCATGTCGGGCCTTTCGGCGACTGCTTTGAGCTGTCCAGCAGACGTGGTAAAGACGAGAATGATGAATCAGTCAGAAATTAAGGAAGGGAAGATTATGTACAGCAGTTCTTATGATTGTCTTGTGAAGACAGTCAAAGTTGAAGGTCTGAGAGCTCTGTGGAAAGGGTTCTTTCCTACATGGGCACGGCTTGGGCCTTGGCAATTTGTTTTCTGGGAGATTTCTGGTGAGAATGCGAAGCCTGAGGATGTGAAGCCCAAGTCTAACAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

349

Amino Acids

38.59

Weight (kDa)

9.36

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	15 - 104	1.5e-18	Mitochondrial carrier protein
Mito_carr	PF00153	165 - 244	6.2e-17	Mitochondrial carrier protein
Mito_carr	PF00153	248 - 330	1.3e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	354
AclI	AACGTT	1 cut(s)	715
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	75
AcyI	GRCGYC	2 cut(s)	25, 366
AfaI	GTAC	5 cut(s)	221, 467, 492, 578, 875
AfiI	CCNNNNNNNGG	2 cut(s)	318, 468
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	307, 569, 662, 917
AjiI	CACGTC	1 cut(s)	820
AluBI	AGCT	8 cut(s)	124, 379, 409, 447, 668, 695, 807, 929
AluI	AGCT	8 cut(s)	124, 379, 409, 447, 668, 695, 807, 929
Alw21I	GWGCWC	3 cut(s)	21, 291, 931
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	3 cut(s)	332, 580, 612
AoxI	GGCC	7 cut(s)	34, 75, 158, 180, 205, 784, 968
Asp700I	GAANNNNTTC	1 cut(s)	941
AspA2I	CCTAGG	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	6 cut(s)	35, 159, 206, 321, 784, 968
AsuC2I	CCSGG	4 cut(s)	139, 176, 200, 509
AsuHPI	GGTGA	2 cut(s)	538, 1013
AsuII	TTCGAA	1 cut(s)	415
AvaI	CYCGRG	3 cut(s)	332, 580, 612
AvaII	GGWCC	1 cut(s)	321
AvrII	CCTAGG	1 cut(s)	572
AxyI	CCTNAGG	1 cut(s)	1017
BaeGI	GKGCMC	1 cut(s)	961
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	931
BarI	GAAGNNNNNNTAC	2 cut(s)	857, 889
BbsI	GAAGAC	2 cut(s)	116, 908
Bbv12I	GWGCWC	3 cut(s)	21, 291, 931
BccI	CCATC	2 cut(s)	308, 536
BceAI	ACGGC	4 cut(s)	49, 145, 367, 977
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	4 cut(s)	139, 176, 200, 509
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	573
BfmI	CTRYAG	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	2 cut(s)	45, 514
BlnI	CCTAGG	1 cut(s)	572
BlpI	GCTNAGC	1 cut(s)	375
Bme1390I	CCNGG	4 cut(s)	139, 176, 200, 509
Bme18I	GGWCC	1 cut(s)	321
BmeT110I	CYCGRG	3 cut(s)	332, 580, 612
BmgBI	CACGTC	1 cut(s)	820
BmgT120I	GGNCC	6 cut(s)	35, 159, 206, 321, 784, 968
BmiI	GGNNCC	6 cut(s)	37, 119, 251, 322, 323, 460
BmrFI	CCNGG	4 cut(s)	139, 176, 200, 509
BmsI	GCATC	3 cut(s)	522, 583, 779
BpiI	GAAGAC	2 cut(s)	116, 908
BpmI	CTGGAG	2 cut(s)	104, 490
Bpu1102I	GCTNAGC	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	4 cut(s)	139, 176, 200, 509
BsaHI	GRCGYC	2 cut(s)	25, 366
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	127, 183, 559, 572, 971
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 468
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	473
Bse21I	CCTNAGG	1 cut(s)	1017
Bse3DI	GCAATG	2 cut(s)	75, 369
BseDI	CCNNGG	5 cut(s)	127, 183, 559, 572, 971
BseGI	GGATG	2 cut(s)	537, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	318, 468
BseMI	GCAATG	2 cut(s)	75, 369
BseMII	CTCAG	7 cut(s)	78, 259, 307, 389, 732, 914, 1008
BseNI	ACTGG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	961
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	7 cut(s)	36, 77, 160, 182, 207, 786, 970
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	3 cut(s)	21, 291, 931
BsiHKCI	CYCGRG	3 cut(s)	332, 580, 612
BsiSI	CCGG	7 cut(s)	139, 157, 175, 199, 236, 363, 509
BslFI	GGGAC	3 cut(s)	121, 228, 307
BslI	CCNNNNNNNGG	2 cut(s)	318, 468
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	3 cut(s)	121, 228, 307
BsmI	GAATGC	2 cut(s)	443, 1012
BsnI	GGCC	7 cut(s)	36, 77, 160, 182, 207, 786, 970
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	3 cut(s)	332, 580, 612
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	4 cut(s)	21, 291, 931, 961
Bsp1407I	TGTACA	2 cut(s)	219, 873
Bsp143I	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
Bsp1720I	GCTNAGC	1 cut(s)	375
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	7 cut(s)	36, 77, 160, 182, 207, 786, 970
BspCNI	CTCAG	7 cut(s)	77, 258, 306, 388, 733, 915, 1009
BspFNI	CGCG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	6 cut(s)	37, 119, 251, 322, 323, 460
BspPI	GGATC	1 cut(s)	148
BspT104I	TTCGAA	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	75, 369
BsrFI	RCCGGY	1 cut(s)	235
BsrGI	TGTACA	2 cut(s)	219, 873
BsrI	ACTGG	1 cut(s)	473
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	5 cut(s)	127, 183, 559, 572, 971
BssMI	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
BssNI	GRCGYC	2 cut(s)	25, 366
BssT1I	CCWWGG	3 cut(s)	559, 572, 971
Bst4CI	ACNGT	5 cut(s)	219, 388, 483, 495, 907
BstACI	GRCGYC	2 cut(s)	25, 366
BstAUI	TGTACA	2 cut(s)	219, 873
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	4 cut(s)	237, 407, 505, 537
BstDEI	CTNAG	8 cut(s)	64, 245, 293, 375, 673, 741, 923, 1017
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	537, 1027
BstFNI	CGCG	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	7 cut(s)	48, 63, 156, 478, 517, 609, 706
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 204, 509
BstSCI	CCNGG	4 cut(s)	137, 174, 198, 507
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	961
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	2 cut(s)	116, 908
BstX2I	RGATCY	2 cut(s)	45, 514
BstYI	RGATCY	2 cut(s)	45, 514
Bsu36I	CCTNAGG	1 cut(s)	1017
BsuRI	GGCC	7 cut(s)	36, 77, 160, 182, 207, 786, 970
BtgI	CCRYGG	1 cut(s)	127
BtrI	CACGTC	1 cut(s)	820
BtsCI	GGATG	2 cut(s)	537, 1027
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	237, 407, 505, 537
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	6 cut(s)	35, 159, 206, 321, 784, 968
CseI	GACGC	2 cut(s)	14, 355
Csp6I	GTAC	5 cut(s)	220, 466, 491, 577, 874
CviAII	CATG	5 cut(s)	106, 682, 707, 778, 954
CviQI	GTAC	5 cut(s)	220, 466, 491, 577, 874
DdeI	CTNAG	8 cut(s)	64, 245, 293, 375, 673, 741, 923, 1017
DpnI	GATC	7 cut(s)	47, 62, 155, 477, 516, 608, 705
DpnII	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
DraI	TTTAAA	1 cut(s)	600
EaeI	YGGCCR	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	929
Eco130I	CCWWGG	3 cut(s)	559, 572, 971
Eco24I	GRGCYC	1 cut(s)	931
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	1017
Eco88I	CYCGRG	3 cut(s)	332, 580, 612
EcoICRI	GAGCTC	1 cut(s)	929
EcoO109I	RGGNCCY	2 cut(s)	206, 321
EcoT14I	CCWWGG	3 cut(s)	559, 572, 971
EcoT38I	GRGCYC	1 cut(s)	931
ErhI	CCWWGG	3 cut(s)	559, 572, 971
FaeI	CATG	5 cut(s)	109, 685, 710, 781, 957
FaqI	GGGAC	3 cut(s)	121, 228, 307
FatI	CATG	5 cut(s)	105, 681, 706, 777, 953
FbaI	TGATCA	1 cut(s)	475
FokI	GGATG	2 cut(s)	544, 1034
FriOI	GRGCYC	1 cut(s)	931
FspBI	CTAG	1 cut(s)	573
GlaI	GCGC	1 cut(s)	197
GsuI	CTGGAG	2 cut(s)	104, 490
HaeIII	GGCC	7 cut(s)	36, 77, 160, 182, 207, 786, 970
HapII	CCGG	7 cut(s)	139, 157, 175, 199, 236, 363, 509
HgaI	GACGC	2 cut(s)	14, 355
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	2 cut(s)	25, 366
Hin1II	CATG	5 cut(s)	109, 685, 710, 781, 957
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	4 cut(s)	134, 241, 357, 841
HpaII	CCGG	7 cut(s)	139, 157, 175, 199, 236, 363, 509
HphI	GGTGA	2 cut(s)	538, 1013
Hpy166II	GTNNAC	3 cut(s)	29, 632, 679
Hpy188I	TCNGA	6 cut(s)	187, 296, 735, 742, 850, 924
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	3 cut(s)	29, 632, 679
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	197, 614, 854, 911
HpyCH4III	ACNGT	5 cut(s)	219, 388, 483, 495, 907
HpyCH4IV	ACGT	3 cut(s)	89, 715, 819
HpyCH4V	TGCA	2 cut(s)	535, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 204, 509
HpyF3I	CTNAG	8 cut(s)	64, 245, 293, 375, 673, 741, 923, 1017
HpySE526I	ACGT	3 cut(s)	89, 715, 819
Hsp92I	GRCGYC	2 cut(s)	25, 366
Hsp92II	CATG	5 cut(s)	109, 685, 710, 781, 957
HspAI	GCGC	1 cut(s)	196
KflI	GGGWCCC	1 cut(s)	321
KroI	GCCGGC	1 cut(s)	235
KroNI	GCCGGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
LmnI	GCTCC	2 cut(s)	123, 129
LweI	GCATC	3 cut(s)	522, 583, 779
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	3 cut(s)	89, 715, 819
MaeIII	GTNAC	1 cut(s)	698
MalI	GATC	7 cut(s)	47, 62, 155, 477, 516, 608, 705
MboI	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
MboII	GAAGA	3 cut(s)	121, 877, 913
MflI	RGATCY	2 cut(s)	45, 514
MhlI	GDGCHC	4 cut(s)	21, 291, 931, 961
MluCI	AATT	4 cut(s)	417, 689, 852, 977
MluI	ACGCGT	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	143, 351
MreI	CGCCGGCG	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	941
MseI	TTAA	2 cut(s)	599, 855
MspI	CCGG	7 cut(s)	139, 157, 175, 199, 236, 363, 509
MspR9I	CCNGG	4 cut(s)	139, 176, 200, 509
Mva1269I	GAATGC	2 cut(s)	443, 1012
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	74, 204, 509
NaeI	GCCGGC	1 cut(s)	237
NciI	CCSGG	4 cut(s)	139, 176, 200, 509
NdeII	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
NgoMIV	GCCGGC	1 cut(s)	235
NlaIII	CATG	5 cut(s)	109, 685, 710, 781, 957
NlaIV	GGNNCC	6 cut(s)	37, 119, 251, 322, 323, 460
NmeAIII	GCCGAG	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	415
PagI	TCATGA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	2 cut(s)	443, 1012
PdiI	GCCGGC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	941
PfeI	GAWTC	2 cut(s)	241, 841
PleI	GAGTC	2 cut(s)	142, 351
PpsI	GAGTC	2 cut(s)	142, 351
PpuMI	RGGWCCY	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	931
Psp1406I	AACGTT	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	321
PspN4I	GGNNCC	6 cut(s)	37, 119, 251, 322, 323, 460
PspPI	GGNCC	6 cut(s)	35, 159, 206, 321, 784, 968
PspPPI	RGGWCCY	1 cut(s)	321
PsuI	RGATCY	2 cut(s)	45, 514
RsaI	GTAC	5 cut(s)	221, 467, 492, 578, 875
RsaNI	GTAC	5 cut(s)	220, 466, 491, 577, 874
SacI	GAGCTC	1 cut(s)	931
SaqAI	TTAA	2 cut(s)	599, 855
Sau3AI	GATC	7 cut(s)	45, 60, 153, 475, 514, 606, 703
Sau96I	GGNCC	6 cut(s)	35, 159, 206, 321, 784, 968
SchI	GAGTC	2 cut(s)	143, 351
ScrFI	CCNGG	4 cut(s)	139, 176, 200, 509
SduI	GDGCHC	4 cut(s)	21, 291, 931, 961
SfaNI	GCATC	3 cut(s)	522, 583, 779
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	1 cut(s)	415
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	442
SmoI	CTYRAG	1 cut(s)	442
Sse9I	AATT	4 cut(s)	417, 689, 852, 977
SsiI	CCGC	1 cut(s)	354
SspMI	CTAG	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	931
StyD4I	CCNGG	4 cut(s)	137, 174, 198, 507
StyI	CCWWGG	3 cut(s)	559, 572, 971
TaaI	ACNGT	5 cut(s)	219, 388, 483, 495, 907
TaiI	ACGT	3 cut(s)	92, 718, 822
TaqI	TCGA	5 cut(s)	59, 99, 152, 415, 591
TasI	AATT	4 cut(s)	417, 689, 852, 977
TatI	WGTACW	4 cut(s)	219, 465, 490, 873
TfiI	GAWTC	2 cut(s)	241, 841
Tru1I	TTAA	2 cut(s)	599, 855
Tru9I	TTAA	2 cut(s)	599, 855
TscAI	CASTG	1 cut(s)	400
TspDTI	ATGAA	4 cut(s)	17, 122, 450, 854
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	321
XmaJI	CCTAGG	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	941
XspI	CTAG	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.