Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Reverse (-)

4841788 .. 4842294

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1068800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAAGCAGACGGTCGGACAGTGGCCCAAGGGTTGCAGCCTAGGTATTCGGGGTGTTTCGATGTGTTGAACAGGATCATACGAGTAGAAGGCGTTGGGGGACTTTGGAAAGGGGTTTTCCCTAATGCAAAACGTTTTGTGTTCGAAAATGGGGTTTCTGAGGACAACATATCCACCCATACTTTGGTGTCGATCGCGTCAGGCCTTTGGGCAAGTTCTTTGAGTTGTCCAGCCGATGTGGTAAAGACGAGAATGATGAATCAGTCGCGGAGCAAGAAAGGGAAGATTATGTATAACAATTCGTACGATTGTCTGGTGAAGACTGTCAAAGTTGAAGGTTTAAGAGCACTGTGGAAAGGGTTCTTTCCTCCGTGGGCAAGGCTCGGTCCTAGGCAATTCGTGTTATGGGTCTCGTATGAGAAGTTTCGACAAATTGCAGGATTCTCTTCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

10.02

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	55 - 145	1.7e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccII	CGCG	2 cut(s)	197, 268
AciI	CCGC	1 cut(s)	268
AclI	AACGTT	1 cut(s)	133
AclWI	GGATC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	70, 335
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	2 cut(s)	24, 202
ApeKI	GCWGC	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	359
AspA2I	CCTAGG	2 cut(s)	41, 389
AspS9I	GGNCC	2 cut(s)	25, 386
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	386
AvrII	CCTAGG	2 cut(s)	41, 389
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	2 cut(s)	42, 390
BisI	GCNGC	1 cut(s)	38
BlnI	CCTAGG	2 cut(s)	41, 389
BlsI	GCNGC	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	2 cut(s)	25, 386
BpiI	GAAGAC	1 cut(s)	326
Bpu14I	TTCGAA	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	415
BsaJI	CCNNGG	4 cut(s)	28, 41, 371, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	28, 41, 371, 389
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	2 cut(s)	197, 268
Bsh1285I	CGRYCG	2 cut(s)	16, 195
BshFI	GGCC	2 cut(s)	26, 204
BsiEI	CGRYCG	2 cut(s)	16, 195
BsiHKAI	GWGCWC	1 cut(s)	349
BsiWI	CGTACG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	26, 204
Bso31I	GGTCTC	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	75, 192
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	26, 204
BspCNI	CTCAG	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	197, 268
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	415
BssECI	CCNNGG	4 cut(s)	28, 41, 371, 389
BssMI	GATC	2 cut(s)	75, 192
BssT1I	CCWWGG	3 cut(s)	28, 41, 389
Bst4CI	ACNGT	4 cut(s)	14, 22, 325, 351
Bst6I	CTCTTC	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	371
BstFNI	CGCG	2 cut(s)	197, 268
BstKTI	GATC	2 cut(s)	78, 195
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	2 cut(s)	75, 192
BstMCI	CGRYCG	2 cut(s)	16, 195
BstUI	CGCG	2 cut(s)	197, 268
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	26, 204
BtgI	CCRYGG	1 cut(s)	371
BtsIMutI	CAGTG	2 cut(s)	27, 347
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	25, 386
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	304
CviJI	RGCY	5 cut(s)	26, 40, 204, 233, 382
CviKI_1	RGCY	5 cut(s)	26, 40, 204, 233, 382
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	77, 194
DpnII	GATC	2 cut(s)	75, 192
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	28, 41, 389
Eco147I	AGGCCT	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	386
EcoT14I	CCWWGG	3 cut(s)	28, 41, 389
ErhI	CCWWGG	3 cut(s)	28, 41, 389
FaiI	YATR	7 cut(s)	80, 170, 180, 290, 294, 406, 417
FaqI	GGGAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	42, 390
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	26, 204
HgaI	GACGC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	259, 441
HphI	GGTGA	1 cut(s)	328
Hpy188I	TCNGA	2 cut(s)	18, 160
HpyAV	CCTTC	2 cut(s)	83, 329
HpyCH4III	ACNGT	4 cut(s)	14, 22, 325, 351
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	4, 37, 128, 437
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	75, 192
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	5 cut(s)	58, 186, 243, 299, 423
Lsp1109I	GCAGC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	42, 390
MaeII	ACGT	1 cut(s)	133
MalI	GATC	2 cut(s)	77, 194
MboI	GATC	2 cut(s)	75, 192
MboII	GAAGA	3 cut(s)	295, 331, 438
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	3 cut(s)	298, 395, 432
MnlI	CCTC	2 cut(s)	154, 378
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	341
MvnI	CGCG	2 cut(s)	197, 268
NdeII	GATC	2 cut(s)	75, 192
NspV	TTCGAA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	259, 441
Pfl23II	CGTACG	1 cut(s)	303
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	39
Ple19I	CGATCG	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	133
PspLI	CGTACG	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	25, 386
PvuI	CGATCG	1 cut(s)	195
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	75, 192
Sau96I	GGNCC	2 cut(s)	25, 386
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	3 cut(s)	47, 136, 340
SfuI	TTCGAA	1 cut(s)	144
SinI	GGWCC	1 cut(s)	386
Sse9I	AATT	3 cut(s)	298, 395, 432
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	42, 390
StuI	AGGCCT	1 cut(s)	204
StyI	CCWWGG	3 cut(s)	28, 41, 389
TaaI	ACNGT	4 cut(s)	14, 22, 325, 351
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	4 cut(s)	60, 144, 191, 427
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	3 cut(s)	298, 395, 432
TfiI	GAWTC	2 cut(s)	259, 441
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	27, 354
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	27, 354
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmaJI	CCTAGG	2 cut(s)	41, 389
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	42, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.