Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Forward (+)

27926329 .. 27926772

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1255700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAACAGAGCGAAAACCTTGGAGCGTACAGGAAGATATTACTAGTGTCGGTCACGACGATAGTGGCGGAGATGACAACATTTTTGGTCGACCTGACGATGACGAGGCTTCAGCTGCACGGTGAGTCGGTGTTGGTTGGGTCAACCCGGAGTACGAACGCATTCTGGGTCACCTTAGAAATCGTGCGAGAGCAAGGTCCGGCAGGATTGTACAAGGGCTTGTCACCGGCGATTCTCAGACACCTCTTCTACACTCCTATTCGGATCATCGAGTACGAGCAGCTCAGAAGCTCGCTGAAGAGCGACAATGGGTCCTTCTCTCTCCCCGCCAAAGCTCTCTCCGATGGGATCTCCGGCATCGTTGCTCAGTTGGTAGCAAACCCTACAAATCTTGTTAAAGTAAGGATGCAAGCAGACGGTCGGACGGTGGCGCAAGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

148

Amino Acids

16.08

Weight (kDa)

9.62

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	8 - 101	1.1e-11	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	68, 327
AclWI	GGATC	2 cut(s)	272, 356
AcuI	CTGAAG	2 cut(s)	95, 317
AfaI	GTAC	4 cut(s)	29, 154, 212, 275
AhdI	GACNNNNNGTC	1 cut(s)	310
AhlI	ACTAGT	1 cut(s)	43
AluBI	AGCT	4 cut(s)	115, 283, 291, 335
AluI	AGCT	4 cut(s)	115, 283, 291, 335
AlwI	GGATC	2 cut(s)	272, 356
ApeKI	GCWGC	2 cut(s)	115, 280
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	2 cut(s)	197, 312
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	134, 163, 216
AvaII	GGWCC	2 cut(s)	197, 312
BbvI	GCAGC	2 cut(s)	102, 292
BccI	CCATC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	116, 281
BlsI	GCNGC	2 cut(s)	117, 282
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	2 cut(s)	197, 312
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	197, 312
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	366, 396
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	250, 298, 380
BseXI	GCAGC	2 cut(s)	102, 292
BsgI	GTGCAG	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	421
BsiSI	CCGG	4 cut(s)	148, 200, 227, 354
BsmI	GAATGC	1 cut(s)	161
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	264, 348
BspACI	CCGC	2 cut(s)	68, 327
BspCNI	CTCAG	3 cut(s)	249, 297, 379
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	272, 356
BspQI	GCTCTTC	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	264, 348
BssT1I	CCWWGG	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	122, 419, 427
Bst6I	CTCTTC	2 cut(s)	251, 293
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	293, 411
BstDEI	CTNAG	4 cut(s)	175, 236, 284, 366
BstEII	GGTNACC	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	2 cut(s)	267, 351
BstMBI	GATC	2 cut(s)	264, 348
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	102, 292
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	411
Cac8I	GCNNGC	2 cut(s)	293, 411
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	197, 312
Csp6I	GTAC	4 cut(s)	28, 153, 211, 274
CviJI	RGCY	6 cut(s)	109, 115, 219, 283, 291, 335
CviKI_1	RGCY	6 cut(s)	109, 115, 219, 283, 291, 335
CviQI	GTAC	4 cut(s)	28, 153, 211, 274
DdeI	CTNAG	4 cut(s)	175, 236, 284, 366
DpnI	GATC	2 cut(s)	266, 350
DpnII	GATC	2 cut(s)	264, 348
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	2 cut(s)	251, 293
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	2 cut(s)	251, 293
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	197, 312
Eco57I	CTGAAG	2 cut(s)	95, 317
Eco91I	GGTNACC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaiI	YATR	1 cut(s)	440
FauI	CCCGC	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	116, 281
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	116, 281
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	2 cut(s)	116, 281
HapII	CCGG	4 cut(s)	148, 200, 227, 354
HhaI	GCGC	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HincII	GTYRAC	2 cut(s)	91, 144
HindII	GTYRAC	2 cut(s)	91, 144
HinfI	GANTC	2 cut(s)	125, 232
HpaII	CCGG	4 cut(s)	148, 200, 227, 354
HphI	GGTGA	3 cut(s)	134, 163, 216
Hpy166II	GTNNAC	2 cut(s)	91, 144
Hpy188I	TCNGA	5 cut(s)	239, 264, 287, 343, 423
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	91, 144
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	3 cut(s)	122, 419, 427
HpyCH4V	TGCA	2 cut(s)	118, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	4 cut(s)	175, 236, 284, 366
HspAI	GCGC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	264, 348
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	8 cut(s)	16, 107, 151, 161, 189, 213, 240, 367
Lsp1109I	GCAGC	2 cut(s)	102, 292
LweI	GCATC	2 cut(s)	366, 396
MaeI	CTAG	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	52, 169, 222
MalI	GATC	2 cut(s)	266, 350
MboI	GATC	2 cut(s)	264, 348
MboII	GAAGA	3 cut(s)	46, 238, 310
MflI	RGATCY	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	2 cut(s)	99, 254
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	4 cut(s)	148, 200, 227, 354
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	1 cut(s)	161
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	2 cut(s)	264, 348
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	3 cut(s)	52, 169, 222
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	117, 282
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	312
PspEI	GGTNACC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	197, 312
PspPPI	RGGWCCY	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	348
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	4 cut(s)	29, 154, 212, 275
RsaNI	GTAC	4 cut(s)	28, 153, 211, 274
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	116, 281
Sau3AI	GATC	2 cut(s)	264, 348
Sau96I	GGNCC	2 cut(s)	197, 312
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	366, 396
SgrAI	CRCCGGYG	1 cut(s)	226
SinI	GGWCC	2 cut(s)	197, 312
SpeI	ACTAGT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	68, 327
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	122, 419, 427
TaqI	TCGA	2 cut(s)	90, 270
TaqII	GACCGA	1 cut(s)	40
TatI	WGTACW	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseFI	GTSAC	3 cut(s)	52, 169, 222
TseI	GCWGC	2 cut(s)	115, 280
Tsp45I	GTSAC	3 cut(s)	52, 169, 222
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	197, 312
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.