Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Forward (+)

5786944 .. 5788470

Gene Structure 1527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAGCCGAGCCAAAAACATAGGCGTCAACACGCCCCCACAAAGATCCTACTGACCTCGATCTCAGCAATCGTGCGCCGGGAAGGCCCTCTGGGACTGTACAAGGGTTTGTCTCCGGCGATTCTCAGGCACCTTTTTTACACGCCTATTCGCATCGTCGGCTACGAGCACCTCAGAAACTCTTTGAAAACCGACGGTGGGTCCCTCTCTCTTCCGGCTAAAACCCTCTCCGGCGTCATTGCTCAGTTGGTGGCAAGCCCGGCAGATCTTGTAAAGGTGAGGATGCAAGCAGATGGTCGTTTTGTGAGCCAAGGCTTTCAACCTAGGTACTCGGGGTGTTTCGATGCTTTAAACAAGATCTCCCGAGCAGAAGGTGTTGGAGGACTTTGGAAAGGGGTTTTCCCCAATGTTCAAAGAGCTTTCTTAGTAAACATGGGGGAATTAGCTTGTTACGAAAATGCAAAACGTTTTGTTATCAATAATCAGATTTCTGAGGATAATATATATGCCCACACGTTAGCATCAATCATGTCGGGCCTTTCAGCGACTGCTTTGAGCTGTCCAGCAGACGTGACTGTCAAAGTTGAAGGTCTGAGAGCTCTGTGGAAAGGGTTCTTTCCTACATGGGCACGGCTTGGGCCTTGGCAATTTGTGTTCTGGGTCTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

223

Amino Acids

24.52

Weight (kDa)

10.1

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 64	1.4e-08	Mitochondrial carrier protein
Mito_carr	PF00153	75 - 161	6.4e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	129
AclI	AACGTT	1 cut(s)	466
AclWI	GGATC	1 cut(s)	40
AcyI	GRCGYC	2 cut(s)	25, 234
AfaI	GTAC	2 cut(s)	101, 329
AfiI	CCNNNNNNNGG	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	187, 320, 413, 587
AhdI	GACNNNNNGTC	1 cut(s)	199
AjiI	CACGTC	1 cut(s)	571
AluBI	AGCT	4 cut(s)	419, 446, 558, 599
AluI	AGCT	4 cut(s)	419, 446, 558, 599
Alw21I	GWGCWC	2 cut(s)	171, 601
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	2 cut(s)	331, 363
AoxI	GGCC	3 cut(s)	85, 535, 638
Asp700I	GAANNNNTTC	1 cut(s)	611
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	4 cut(s)	86, 201, 535, 638
AsuC2I	CCSGG	2 cut(s)	80, 260
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	2 cut(s)	331, 363
AvaII	GGWCC	1 cut(s)	201
AvrII	CCTAGG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	631
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	171, 601
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	647
BcnI	CCSGG	2 cut(s)	80, 260
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	84
BglII	AGATCT	2 cut(s)	265, 357
BlnI	CCTAGG	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	80, 260
Bme18I	GGWCC	1 cut(s)	201
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmeT110I	CYCGRG	2 cut(s)	331, 363
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	4 cut(s)	86, 201, 535, 638
BmiI	GGNNCC	3 cut(s)	131, 202, 203
BmrFI	CCNGG	2 cut(s)	80, 260
BmsI	GCATC	4 cut(s)	162, 273, 334, 530
BpuMI	CCSGG	2 cut(s)	80, 260
BsaHI	GRCGYC	2 cut(s)	25, 234
BsaJI	CCNNGG	3 cut(s)	310, 323, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	237
BseDI	CCNNGG	3 cut(s)	310, 323, 641
BseGI	GGATG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	6 cut(s)	78, 139, 187, 257, 483, 584
BseSI	GKGCMC	1 cut(s)	631
BshFI	GGCC	3 cut(s)	87, 537, 640
BshNI	GGYRCC	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	171, 601
BsiHKCI	CYCGRG	2 cut(s)	331, 363
BsiSI	CCGG	5 cut(s)	79, 116, 215, 231, 260
BslFI	GGGAC	2 cut(s)	108, 187
BslI	CCNNNNNNNGG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	108, 187
BsnI	GGCC	3 cut(s)	87, 537, 640
BsoBI	CYCGRG	2 cut(s)	331, 363
Bsp1286I	GDGCHC	3 cut(s)	171, 601, 631
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	45, 60, 265, 357
BspANI	GGCC	3 cut(s)	87, 537, 640
BspCNI	CTCAG	6 cut(s)	77, 138, 186, 256, 484, 585
BspLI	GGNNCC	3 cut(s)	131, 202, 203
BspPI	GGATC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	99
BssECI	CCNNGG	3 cut(s)	310, 323, 641
BssMI	GATC	4 cut(s)	45, 60, 265, 357
BssNI	GRCGYC	2 cut(s)	25, 234
BssT1I	CCWWGG	3 cut(s)	310, 323, 641
Bst4CI	ACNGT	3 cut(s)	99, 197, 577
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	2 cut(s)	25, 234
BstAUI	TGTACA	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	256, 288
BstDEI	CTNAG	7 cut(s)	64, 125, 173, 243, 424, 492, 593
BstF5I	GGATG	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	4 cut(s)	48, 63, 268, 360
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	4 cut(s)	45, 60, 265, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 159, 260
BstSCI	CCNGG	2 cut(s)	78, 258
BstSLI	GKGCMC	1 cut(s)	631
BstX2I	RGATCY	3 cut(s)	45, 265, 357
BstYI	RGATCY	3 cut(s)	45, 265, 357
BsuRI	GGCC	3 cut(s)	87, 537, 640
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	256, 288
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	4 cut(s)	86, 201, 535, 638
CseI	GACGC	2 cut(s)	14, 223
Csp6I	GTAC	2 cut(s)	100, 328
CviAII	CATG	3 cut(s)	433, 529, 624
CviQI	GTAC	2 cut(s)	100, 328
DdeI	CTNAG	7 cut(s)	64, 125, 173, 243, 424, 492, 593
DpnI	GATC	4 cut(s)	47, 62, 267, 359
DpnII	GATC	4 cut(s)	45, 60, 265, 357
DraI	TTTAAA	1 cut(s)	351
DrdI	GACNNNNNNGTC	1 cut(s)	575
DriI	GACNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	216
Eam1105I	GACNNNNNGTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	3 cut(s)	310, 323, 641
Eco24I	GRGCYC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	599
Eco88I	CYCGRG	2 cut(s)	331, 363
EcoICRI	GAGCTC	1 cut(s)	599
EcoO109I	RGGNCCY	2 cut(s)	86, 201
EcoT14I	CCWWGG	3 cut(s)	310, 323, 641
EcoT38I	GRGCYC	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	310, 323, 641
FaeI	CATG	3 cut(s)	436, 532, 627
FaiI	YATR	7 cut(s)	21, 434, 503, 505, 507, 530, 625
FaqI	GGGAC	2 cut(s)	108, 187
FatI	CATG	3 cut(s)	432, 528, 623
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	601
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	87, 537, 640
HapII	CCGG	5 cut(s)	79, 116, 215, 231, 260
HgaI	GACGC	2 cut(s)	14, 223
HhaI	GCGC	1 cut(s)	78
Hin1I	GRCGYC	2 cut(s)	25, 234
Hin1II	CATG	3 cut(s)	436, 532, 627
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	29
HindII	GTYRAC	1 cut(s)	29
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	5 cut(s)	79, 116, 215, 231, 260
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	29, 430
Hpy188I	TCNGA	4 cut(s)	176, 486, 493, 594
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	2 cut(s)	29, 430
Hpy99I	CGWCG	2 cut(s)	161, 197
HpyAV	CCTTC	3 cut(s)	77, 365, 581
HpyCH4III	ACNGT	3 cut(s)	99, 197, 577
HpyCH4IV	ACGT	3 cut(s)	466, 515, 570
HpyCH4V	TGCA	2 cut(s)	286, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 159, 260
HpyF3I	CTNAG	7 cut(s)	64, 125, 173, 243, 424, 492, 593
HpySE526I	ACGT	3 cut(s)	466, 515, 570
Hsp92I	GRCGYC	2 cut(s)	25, 234
Hsp92II	CATG	3 cut(s)	436, 532, 627
HspAI	GCGC	1 cut(s)	76
KflI	GGGWCCC	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	45, 60, 265, 357
LpnPI	CCDG	9 cut(s)	77, 92, 112, 129, 228, 244, 273, 576, 643
LweI	GCATC	4 cut(s)	162, 273, 334, 530
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	3 cut(s)	466, 515, 570
MaeIII	GTNAC	2 cut(s)	449, 571
MalI	GATC	4 cut(s)	47, 62, 267, 359
MboI	GATC	4 cut(s)	45, 60, 265, 357
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	3 cut(s)	45, 265, 357
MhlI	GDGCHC	3 cut(s)	171, 601, 631
MluCI	AATT	2 cut(s)	440, 647
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	8 cut(s)	67, 99, 182, 215, 236, 273, 374, 487
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	1 cut(s)	350
MspI	CCGG	5 cut(s)	79, 116, 215, 231, 260
MspR9I	CCNGG	2 cut(s)	80, 260
MwoI	GCNNNNNNNGC	3 cut(s)	84, 159, 260
NciI	CCSGG	2 cut(s)	80, 260
NdeII	GATC	4 cut(s)	45, 60, 265, 357
NlaIII	CATG	3 cut(s)	436, 532, 627
NlaIV	GGNNCC	3 cut(s)	131, 202, 203
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	1 cut(s)	121
PpuMI	RGGWCCY	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	601
Psp1406I	AACGTT	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	131, 202, 203
PspPI	GGNCC	4 cut(s)	86, 201, 535, 638
PspPPI	RGGWCCY	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	3 cut(s)	45, 265, 357
RsaI	GTAC	2 cut(s)	101, 329
RsaNI	GTAC	2 cut(s)	100, 328
SacI	GAGCTC	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	350
Sau3AI	GATC	4 cut(s)	45, 60, 265, 357
Sau96I	GGNCC	4 cut(s)	86, 201, 535, 638
ScrFI	CCNGG	2 cut(s)	80, 260
SduI	GDGCHC	3 cut(s)	171, 601, 631
SfaNI	GCATC	4 cut(s)	162, 273, 334, 530
SinI	GGWCC	1 cut(s)	201
Sse9I	AATT	2 cut(s)	440, 647
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	78, 258
StyI	CCWWGG	3 cut(s)	310, 323, 641
TaaI	ACNGT	3 cut(s)	99, 197, 577
TaiI	ACGT	3 cut(s)	469, 518, 573
TaqI	TCGA	2 cut(s)	59, 342
TasI	AATT	2 cut(s)	440, 647
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	571
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	201
XmaJI	CCTAGG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.