Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8146616.1

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Forward (+)

115 .. 621

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8146616.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgcaagcagatggtcgttttgtgagccaaggctttcaacctaggtactcggggtgtttcgatgctttaaacaagatcgcccgagcagaaggtgttggaggactttggaaaggggttttccctaatgttcaaagagctttcttagtaaacatgggagaattagcttgttacgatcatgcaaaacgttttgtaatcaataatcagatttctgaggataatatatatgcccacacattagcatcaatcatgtcgggcctttcggcgactgctttgagctgtccagcagacgtggtaaagacgagaatgatgaatcagtcagaaattaaggaagggaagattatgtacagcagttcttatgattgtcttgtgaagacagtcaaagttgaaggtctgagagctctgtggaaagggttctttcctacatgggcacggcttgggccttggcaatttgttttctgggtctcgtacgagaagtttcgacaaattgcagggttttcttccttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

9.25

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	184
AfaI	GTAC	3 cut(s)	47, 344, 467
AgsI	TTSAA	3 cut(s)	38, 131, 386
AjiI	CACGTC	1 cut(s)	289
AluBI	AGCT	4 cut(s)	137, 164, 276, 398
AluI	AGCT	4 cut(s)	137, 164, 276, 398
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	466
Ama87I	CYCGRG	2 cut(s)	49, 81
AoxI	GGCC	2 cut(s)	253, 437
Asp700I	GAANNNNTTC	1 cut(s)	410
AspA2I	CCTAGG	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	253, 437
AvaI	CYCGRG	2 cut(s)	49, 81
AvrII	CCTAGG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	400
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	400
BccI	CCATC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	42
BlnI	CCTAGG	1 cut(s)	41
BmeT110I	CYCGRG	2 cut(s)	49, 81
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	253, 437
BmsI	GCATC	2 cut(s)	52, 248
BpiI	GAAGAC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	28, 41, 440
BseDI	CCNNGG	3 cut(s)	28, 41, 440
BseMII	CTCAG	2 cut(s)	201, 383
BseSI	GKGCMC	1 cut(s)	430
BshFI	GGCC	2 cut(s)	255, 439
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	2 cut(s)	49, 81
BsiWI	CGTACG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	255, 439
Bso31I	GGTCTC	1 cut(s)	466
BsoBI	CYCGRG	2 cut(s)	49, 81
Bsp1286I	GDGCHC	2 cut(s)	400, 430
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	75, 172
BspANI	GGCC	2 cut(s)	255, 439
BspCNI	CTCAG	2 cut(s)	202, 384
BspTNI	GGTCTC	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	342
BssECI	CCNNGG	3 cut(s)	28, 41, 440
BssMI	GATC	2 cut(s)	75, 172
BssT1I	CCWWGG	3 cut(s)	28, 41, 440
Bst4CI	ACNGT	1 cut(s)	376
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	142, 210, 392
BstKTI	GATC	2 cut(s)	78, 175
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	2 cut(s)	75, 172
BstSLI	GKGCMC	1 cut(s)	430
BstV2I	GAAGAC	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	255, 439
BtrI	CACGTC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	253, 437
Csp6I	GTAC	3 cut(s)	46, 343, 466
CviAII	CATG	4 cut(s)	151, 176, 247, 423
CviJI	RGCY	9 cut(s)	27, 33, 137, 164, 255, 276, 398, 433, 439
CviKI_1	RGCY	9 cut(s)	27, 33, 137, 164, 255, 276, 398, 433, 439
CviQI	GTAC	3 cut(s)	46, 343, 466
DdeI	CTNAG	3 cut(s)	142, 210, 392
DpnI	GATC	2 cut(s)	77, 174
DpnII	GATC	2 cut(s)	75, 172
DraI	TTTAAA	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	398
Eco130I	CCWWGG	3 cut(s)	28, 41, 440
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	466
Eco53kI	GAGCTC	1 cut(s)	398
Eco88I	CYCGRG	2 cut(s)	49, 81
EcoICRI	GAGCTC	1 cut(s)	398
EcoT14I	CCWWGG	3 cut(s)	28, 41, 440
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	3 cut(s)	28, 41, 440
FaeI	CATG	4 cut(s)	154, 179, 250, 426
FaiI	YATR	9 cut(s)	152, 177, 221, 223, 225, 248, 341, 357, 424
FatI	CATG	4 cut(s)	150, 175, 246, 422
FriOI	GRGCYC	1 cut(s)	400
FspBI	CTAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	255, 439
Hin1II	CATG	4 cut(s)	154, 179, 250, 426
HinfI	GANTC	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	5 cut(s)	204, 211, 319, 393, 506
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	3 cut(s)	83, 323, 380
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	2 cut(s)	184, 288
HpyCH4V	TGCA	3 cut(s)	4, 179, 488
HpyF3I	CTNAG	3 cut(s)	142, 210, 392
HpySE526I	ACGT	2 cut(s)	184, 288
Hsp92II	CATG	4 cut(s)	154, 179, 250, 426
Kzo9I	GATC	2 cut(s)	75, 172
LpnPI	CCDG	3 cut(s)	294, 442, 474
LweI	GCATC	2 cut(s)	52, 248
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	2 cut(s)	184, 288
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	2 cut(s)	77, 174
MboI	GATC	2 cut(s)	75, 172
MboII	GAAGA	3 cut(s)	346, 382, 489
MhlI	GDGCHC	2 cut(s)	400, 430
MluCI	AATT	4 cut(s)	158, 321, 446, 483
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	2 cut(s)	92, 205
MroXI	GAANNNNTTC	1 cut(s)	410
MseI	TTAA	2 cut(s)	68, 324
NdeII	GATC	2 cut(s)	75, 172
NlaIII	CATG	4 cut(s)	154, 179, 250, 426
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	310
Pfl23II	CGTACG	1 cut(s)	465
Psp124BI	GAGCTC	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	184
PspLI	CGTACG	1 cut(s)	465
PspPI	GGNCC	2 cut(s)	253, 437
RsaI	GTAC	3 cut(s)	47, 344, 467
RsaNI	GTAC	3 cut(s)	46, 343, 466
SacI	GAGCTC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	68, 324
Sau3AI	GATC	2 cut(s)	75, 172
Sau96I	GGNCC	2 cut(s)	253, 437
SduI	GDGCHC	2 cut(s)	400, 430
SfaNI	GCATC	2 cut(s)	52, 248
Sse9I	AATT	4 cut(s)	158, 321, 446, 483
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	400
StyI	CCWWGG	3 cut(s)	28, 41, 440
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	2 cut(s)	187, 291
TaqI	TCGA	2 cut(s)	60, 478
TasI	AATT	4 cut(s)	158, 321, 446, 483
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	68, 324
Tru9I	TTAA	2 cut(s)	68, 324
TspDTI	ATGAA	1 cut(s)	323
XmaJI	CCTAGG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.