Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008637

Physical Location & Seq

Genomic Coordinates Reverse (-)

4877302 .. 4878710

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1069100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAACAGAGCGAAGACCCCGGAGCGTACAGGAAGATATTACTGGCGTCGGTCTCGGCGATGGTGGCGGAGACGACAACGTTTCCGGTCGACCTGACGAAGACGAGGCTTCAGCTGCACGGCGAATCGGTGTCGGTTGGGTCAACCCGGAGTACGAACGCGTTCCGGGTCGCCTCGGAAATCGTGCGGGAGCAAGGTCCGGTGGGATTGTACAAGGGCTTGTCACCGGCGATTCTCAGACACCTCTTCTACACGCCGATTCGGATCGTCGGGTACGAGCAGCTCAGAAGCTCGCTGAAGAGCGACGGTGGGTCCCTCTCTCTCCCCGCCAAAGCTCTCTCCGGTGGAATCTCCGGCGTCGTTGCTCAGTTGGTAGCTAGCCCTGCAGATCTTGTTAAGGTAAGGATGCAAGCAGACGGTCGGACGGTGGCCCAAGGTATGCAGCCTCGGTATTCGGGGTGTTTCGATGCTTTGAACAAGATTGTACGAGCAGAAGGCGTTGGGGGACTTTGGAAAGGGGTTTTCCCTAATGTCCAAAGAGCATTCTTGGTGAACATGGGAGAATTGGCCTGTTATGATCAGGCAAAACGTTTTGTGATCGAGAATCGGATTTCTGAAGACAACATATACGCTCACACTTTGGCGTCGATCATGTCAGGCCTTTCGGCAACTGCTTTGAGTTGTCCAGCTGACGTGGTAAAGACGAGAATGATGAATCAATCGAGGAGCAAGGAAGGGAAGATTATGTACAACAATTCGTATGATTGTCTGGTTAAGACTGTCAAAGTTGAAGGTTTAAGCGCACTGTGGAAAGGGTTCTTTCCTACGTGGGCAAGGCTCGGTCCTTGGCAATTCGTCTTCTGGGTCTCGTATGAGAAGTTTCGACAAATTGCAGGATTCTCTTCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042391 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051881 GO:0055085 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

33.21

Weight (kDa)

9.67

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	9 - 101	4.5e-19	Mitochondrial carrier protein
Mito_carr	PF00153	106 - 201	3.4e-24	Mitochondrial carrier protein
Mito_carr	PF00153	206 - 297	1.8e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14140
fragaria_vesca	FvH4_4g31010 FvH4_4g31020
malus_domestica	MD13G1068800.v1.1 MD13G1255700.v1.1 MD16G1069100.v1.1
prunus_persica	Prupe.1G278100_v2.0.a1
pyrus_communis	pycom13g06160
rosa_chinensis	RchiOBHm_Chr4g0439381 RchiOBHm_Chr7g0223901
rosa_laevigata	RLG00000001923 RLG00000006275
rosa_multiflora	Rmu_co8146616.1_g000001 Rmu_sc0002469.1_g000001 Rmu_sc0004540.1_g000015
rosa_roxburghii	Rroxscaffold_3G00235200 Rroxscaffold_5G00380320
rosa_rugosa	Rorug07G0221100
rosa_samantha	Rh4DG375600 Rh7AG363700 Rh7CG382500 Rh7DG358400
rosa_wichuraiana	Rw7G030870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	161
AciI	CCGC	3 cut(s)	68, 187, 327
AclI	AACGTT	2 cut(s)	80, 589
AclWI	GGATC	1 cut(s)	272
AcuI	CTGAAG	3 cut(s)	95, 317, 636
AcyI	GRCGYC	3 cut(s)	47, 357, 644
AfaI	GTAC	6 cut(s)	29, 154, 212, 275, 486, 749
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	475, 791
AhdI	GACNNNNNGTC	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	694
AluBI	AGCT	6 cut(s)	115, 283, 291, 335, 377, 689
AluI	AGCT	6 cut(s)	115, 283, 291, 335, 377, 689
Alw26I	GTCTC	3 cut(s)	58, 65, 871
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	3 cut(s)	429, 567, 658
ApeKI	GCWGC	3 cut(s)	115, 280, 442
Asp700I	GAANNNNTTC	2 cut(s)	161, 815
AspLEI	GCGC	1 cut(s)	803
AspS9I	GGNCC	4 cut(s)	197, 312, 430, 842
AsuC2I	CCSGG	3 cut(s)	21, 148, 167
AsuHPI	GGTGA	2 cut(s)	216, 562
AsuNHI	GCTAGC	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	197, 312, 842
BarI	GAAGNNNNNNTAC	2 cut(s)	731, 763
BbsI	GAAGAC	4 cut(s)	21, 107, 624, 850
BbvI	GCAGC	3 cut(s)	102, 292, 454
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	3 cut(s)	21, 148, 167
BcoDI	GTCTC	3 cut(s)	58, 65, 871
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	384
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	116, 281, 443
BlsI	GCNGC	3 cut(s)	117, 282, 444
Bme1390I	CCNGG	3 cut(s)	21, 148, 167
Bme18I	GGWCC	3 cut(s)	197, 312, 842
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	694
BmgT120I	GGNCC	4 cut(s)	197, 312, 430, 842
BmiI	GGNNCC	2 cut(s)	313, 314
BmrFI	CCNGG	3 cut(s)	21, 148, 167
BmsI	GCATC	2 cut(s)	396, 457
BmtI	GCTAGC	1 cut(s)	381
BpiI	GAAGAC	4 cut(s)	21, 107, 624, 850
BpuMI	CCSGG	3 cut(s)	21, 148, 167
BsaAI	YACGTR	1 cut(s)	828
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	3 cut(s)	47, 357, 644
BsaI	GGTCTC	2 cut(s)	58, 871
BsaJI	CCNNGG	5 cut(s)	19, 174, 433, 446, 845
BsaWI	WCCGGW	3 cut(s)	85, 199, 341
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	263
BseDI	CCNNGG	5 cut(s)	19, 174, 433, 446, 845
BseGI	GGATG	1 cut(s)	411
BseJI	GATNNNNATC	1 cut(s)	263
BseMII	CTCAG	3 cut(s)	250, 298, 380
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	739
BseXI	GCAGC	3 cut(s)	102, 292, 454
BsgI	GTGCAG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	2 cut(s)	90, 421
BshFI	GGCC	3 cut(s)	431, 569, 660
BsiEI	CGRYCG	2 cut(s)	90, 421
BsiSI	CCGG	8 cut(s)	21, 86, 148, 166, 200, 227, 342, 354
BslFI	GGGAC	2 cut(s)	298, 519
BsmAI	GTCTC	3 cut(s)	58, 65, 871
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	298, 519
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	3 cut(s)	431, 569, 660
Bso31I	GGTCTC	2 cut(s)	58, 871
Bsp1407I	TGTACA	2 cut(s)	210, 747
Bsp143I	GATC	5 cut(s)	264, 388, 577, 597, 648
BspACI	CCGC	3 cut(s)	68, 187, 327
BspANI	GGCC	3 cut(s)	431, 569, 660
BspCNI	CTCAG	3 cut(s)	249, 297, 379
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	313, 314
BspMAI	CTGCAG	1 cut(s)	388
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	272
BspQI	GCTCTTC	1 cut(s)	293
BspTNI	GGTCTC	2 cut(s)	58, 871
BsrFI	RCCGGY	1 cut(s)	226
BsrGI	TGTACA	2 cut(s)	210, 747
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	5 cut(s)	19, 174, 433, 446, 845
BssMI	GATC	5 cut(s)	264, 388, 577, 597, 648
BssNI	GRCGYC	3 cut(s)	47, 357, 644
BssT1I	CCWWGG	2 cut(s)	433, 845
Bst4CI	ACNGT	5 cut(s)	308, 419, 427, 781, 807
Bst6I	CTCTTC	3 cut(s)	251, 293, 907
BstACI	GRCGYC	3 cut(s)	47, 357, 644
BstAUI	TGTACA	2 cut(s)	210, 747
BstBAI	YACGTR	1 cut(s)	828
BstC8I	GCNNGC	3 cut(s)	293, 379, 411
BstDEI	CTNAG	3 cut(s)	236, 284, 366
BstF5I	GGATG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	5 cut(s)	267, 391, 580, 600, 651
BstMAI	GTCTC	3 cut(s)	58, 65, 871
BstMBI	GATC	5 cut(s)	264, 388, 577, 597, 648
BstMCI	CGRYCG	2 cut(s)	90, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 115, 383
BstSCI	CCNGG	3 cut(s)	19, 146, 165
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	3 cut(s)	102, 292, 454
BstV2I	GAAGAC	4 cut(s)	21, 107, 624, 850
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	431, 569, 660
BtgZI	GCGATG	1 cut(s)	74
BtrI	CACGTC	1 cut(s)	694
BtsCI	GGATG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	803
Cac8I	GCNNGC	3 cut(s)	293, 379, 411
CfoI	GCGC	1 cut(s)	803
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	4 cut(s)	197, 312, 430, 842
CseI	GACGC	3 cut(s)	36, 346, 633
Csp6I	GTAC	6 cut(s)	28, 153, 211, 274, 485, 748
CviAII	CATG	2 cut(s)	556, 652
CviQI	GTAC	6 cut(s)	28, 153, 211, 274, 485, 748
DdeI	CTNAG	3 cut(s)	236, 284, 366
DpnI	GATC	5 cut(s)	266, 390, 579, 599, 650
DpnII	GATC	5 cut(s)	264, 388, 577, 597, 648
DriI	GACNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	251, 293, 907
Eam1105I	GACNNNNNGTC	1 cut(s)	310
EarI	CTCTTC	3 cut(s)	251, 293, 907
EciI	GGCGGA	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	433, 845
Eco147I	AGGCCT	1 cut(s)	660
Eco31I	GGTCTC	2 cut(s)	58, 871
Eco47I	GGWCC	3 cut(s)	197, 312, 842
Eco57I	CTGAAG	3 cut(s)	95, 317, 636
EcoO109I	RGGNCCY	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	433, 845
ErhI	CCWWGG	2 cut(s)	433, 845
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	559, 655
FaiI	YATR	9 cut(s)	440, 557, 576, 626, 628, 653, 746, 762, 873
FaqI	GGGAC	2 cut(s)	298, 519
FatI	CATG	2 cut(s)	555, 651
FauI	CCCGC	2 cut(s)	180, 334
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	116, 281, 443
FokI	GGATG	1 cut(s)	418
Fsp4HI	GCNGC	3 cut(s)	116, 281, 443
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	802
GluI	GCNGC	3 cut(s)	116, 281, 443
HaeIII	GGCC	3 cut(s)	431, 569, 660
HapII	CCGG	8 cut(s)	21, 86, 148, 166, 200, 227, 342, 354
HgaI	GACGC	3 cut(s)	36, 346, 633
HhaI	GCGC	1 cut(s)	803
Hin1I	GRCGYC	3 cut(s)	47, 357, 644
Hin1II	CATG	2 cut(s)	559, 655
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HincII	GTYRAC	2 cut(s)	91, 144
HindII	GTYRAC	2 cut(s)	91, 144
HinfI	GANTC	7 cut(s)	125, 232, 259, 348, 604, 715, 897
HpaII	CCGG	8 cut(s)	21, 86, 148, 166, 200, 227, 342, 354
HphI	GGTGA	2 cut(s)	216, 562
Hpy166II	GTNNAC	3 cut(s)	91, 144, 553
Hpy188I	TCNGA	8 cut(s)	178, 239, 264, 287, 423, 609, 616, 911
Hpy188III	TCNNGA	1 cut(s)	601
Hpy8I	GTNNAC	3 cut(s)	91, 144, 553
Hpy99I	CGWCG	5 cut(s)	52, 272, 308, 362, 649
HpyAV	CCTTC	3 cut(s)	488, 728, 785
HpyCH4III	ACNGT	5 cut(s)	308, 419, 427, 781, 807
HpyCH4IV	ACGT	4 cut(s)	80, 589, 693, 827
HpyCH4V	TGCA	5 cut(s)	118, 386, 409, 442, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 115, 383
HpyF3I	CTNAG	3 cut(s)	236, 284, 366
HpySE526I	ACGT	4 cut(s)	80, 589, 693, 827
Hsp92I	GRCGYC	3 cut(s)	47, 357, 644
Hsp92II	CATG	2 cut(s)	559, 655
HspAI	GCGC	1 cut(s)	801
KflI	GGGWCCC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	5 cut(s)	264, 388, 577, 597, 648
LguI	GCTCTTC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	23, 190, 726
Lsp1109I	GCAGC	3 cut(s)	102, 292, 454
LweI	GCATC	2 cut(s)	396, 457
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	4 cut(s)	80, 589, 693, 827
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	5 cut(s)	266, 390, 579, 599, 650
MboI	GATC	5 cut(s)	264, 388, 577, 597, 648
MboII	GAAGA	9 cut(s)	26, 46, 112, 238, 310, 629, 751, 850, 894
MflI	RGATCY	1 cut(s)	388
MluCI	AATT	4 cut(s)	563, 754, 851, 888
MluI	ACGCGT	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	6 cut(s)	99, 184, 254, 326, 456, 717
MroXI	GAANNNNTTC	2 cut(s)	161, 815
MseI	TTAA	3 cut(s)	396, 774, 797
MspA1I	CMGCKG	2 cut(s)	115, 689
MspI	CCGG	8 cut(s)	21, 86, 148, 166, 200, 227, 342, 354
MspR9I	CCNGG	3 cut(s)	21, 148, 167
Mva1269I	GAATGC	1 cut(s)	542
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	65, 115, 383
NciI	CCSGG	3 cut(s)	21, 148, 167
NdeII	GATC	5 cut(s)	264, 388, 577, 597, 648
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	559, 655
NlaIV	GGNNCC	2 cut(s)	313, 314
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 273
PctI	GAATGC	1 cut(s)	542
PdmI	GAANNNNTTC	2 cut(s)	161, 815
PfeI	GAWTC	7 cut(s)	125, 232, 259, 348, 604, 715, 897
PkrI	GCNGC	3 cut(s)	117, 282, 444
Ppu21I	YACGTR	1 cut(s)	828
PpuMI	RGGWCCY	1 cut(s)	312
Psp1406I	AACGTT	2 cut(s)	80, 589
Psp5II	RGGWCCY	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	313, 314
PspPI	GGNCC	4 cut(s)	197, 312, 430, 842
PspPPI	RGGWCCY	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	2 cut(s)	115, 689
RsaI	GTAC	6 cut(s)	29, 154, 212, 275, 486, 749
RsaNI	GTAC	6 cut(s)	28, 153, 211, 274, 485, 748
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	396, 774, 797
SatI	GCNGC	3 cut(s)	116, 281, 443
Sau3AI	GATC	5 cut(s)	264, 388, 577, 597, 648
Sau96I	GGNCC	4 cut(s)	197, 312, 430, 842
ScrFI	CCNGG	3 cut(s)	21, 148, 167
SfaNI	GCATC	2 cut(s)	396, 457
SfcI	CTRYAG	1 cut(s)	384
SgrAI	CRCCGGYG	1 cut(s)	226
SinI	GGWCC	3 cut(s)	197, 312, 842
Sse9I	AATT	4 cut(s)	563, 754, 851, 888
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	3 cut(s)	68, 187, 327
SspMI	CTAG	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	19, 146, 165
StyI	CCWWGG	2 cut(s)	433, 845
TaaI	ACNGT	5 cut(s)	308, 419, 427, 781, 807
TaiI	ACGT	4 cut(s)	83, 592, 696, 830
TaqI	TCGA	6 cut(s)	90, 465, 600, 647, 722, 883
TaqII	GACCGA	2 cut(s)	40, 830
TasI	AATT	4 cut(s)	563, 754, 851, 888
TatI	WGTACW	2 cut(s)	210, 747
TfiI	GAWTC	7 cut(s)	125, 232, 259, 348, 604, 715, 897
Tru1I	TTAA	3 cut(s)	396, 774, 797
Tru9I	TTAA	3 cut(s)	396, 774, 797
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	3 cut(s)	115, 280, 442
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	17, 728
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	3 cut(s)	197, 312, 842
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	2 cut(s)	161, 815
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.