Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Forward (+)

32271960 .. 32273511

Gene Structure 1552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGATCGACGATCCTTCCGCTCCGACGACCCAAGACCCGAATCCCCAACCCGATAACCTGATTCCCCAATCCATTGTGCAAGTGGATGCACAAGGACTTATTCGTTATCCCTCTCCATGTCCTACAATGGTTCGACCTGGTTTTCCCTCACGGCCACCTAGAGGAATTGGTATGCTTCCATCTATACAACGCCCTCCTATGCTGGGAATTCCTGGGGTTCGCCCCATTATGCCTCCTGTTGTTAGGCCAGTTGTTCCTAGTGTTACTCCAGCTGAGAAACCACAAACAACTGTCTTTGTCGGCAAGATAGCCCCAACAGTAAACAATGATTTCATTTTATATCTCCTTCAGTTATGTGGACCTGTCAAGCTTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCGAAAGGCTTTGGGTTTTGTGAATTTGAATCTGCTGAAGGGGTTCTTCGTGCATTACGCCTTCTGAGTAAATTCAACATTGATGGGAAGGAGCTGGTGTTAATTGTTAAACAAGCAACACGAGAGTATCTGGAGCGGTTTGTAGAAAAGAAAATTGAAAACACAAAGAAGCTAAAAGACAGTCAAGCTGAGGGAGATGAGAAAGAGGGTCAGAGTACCATTGATAAGACTGTAGTTCCAAATTCTGTTGTGGATTCGAAGGAGGAGGACAATAATTCAGGGAACAAAGAGAGCATCAGTAAAAACTTTGGGATCGTGACGGATGAAGACAAGGAAGCTGACAGGGTGGCTTTGGAGAAGCTTACAAGCTTGATAGAGGAGAGATTAAAAACGAATCCTCTGCCTCCACCACCGCCACTTGCTCCTGGGAATTCCATCTCAGAGCCTCCGGCTAACTCAAGGGACGGAGACCCTAATGTGGATATAGCAAGAAATGGTATAGTTTCAAACTTTCTATTGCTATCATACTGGAGATTGTTAGTTTGTTGTGTGTGCGTCAATTTCTTGTTTCTTTTGTACTATTGCCTTGGGCTTGTGTTAGTGTGTTGTGTGTGCATCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

343

Amino Acids

37.61

Weight (kDa)

5.39

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	98 - 167	2.4e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	20, 541
AciI	CCGC	3 cut(s)	18, 541, 818
AclWI	GGATC	3 cut(s)	5, 383, 725
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	5 cut(s)	207, 428, 476, 646, 835
AcuI	CTGAAG	2 cut(s)	332, 462
AfaI	GTAC	2 cut(s)	622, 983
AfiI	CCNNNNNNNGG	5 cut(s)	161, 203, 398, 399, 883
AgsI	TTSAA	4 cut(s)	434, 481, 563, 912
AjnI	CCWGG	3 cut(s)	136, 211, 829
AluBI	AGCT	8 cut(s)	272, 370, 499, 577, 593, 743, 766, 774
AluI	AGCT	8 cut(s)	272, 370, 499, 577, 593, 743, 766, 774
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	3 cut(s)	5, 383, 725
AoxI	GGCC	2 cut(s)	152, 245
ApoI	RAATTY	5 cut(s)	207, 428, 476, 646, 835
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	359
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	594
BccI	CCATC	4 cut(s)	187, 392, 482, 848
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	787, 821
BciT130I	CCWGG	3 cut(s)	138, 213, 831
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	2 cut(s)	159, 258
BfmI	CTRYAG	1 cut(s)	636
Bme1390I	CCNGG	3 cut(s)	138, 213, 831
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	138, 213, 831
BmsI	GCATC	2 cut(s)	76, 708
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	3 cut(s)	252, 557, 955
Bpu10I	CCTNAGC	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	662
BpuEI	CTTGAG	2 cut(s)	369, 847
BsaI	GGTCTC	1 cut(s)	867
BsaJI	CCNNGG	3 cut(s)	212, 830, 991
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 203, 398, 399, 883
Bse1I	ACTGG	2 cut(s)	248, 938
BseBI	CCWGG	3 cut(s)	138, 213, 831
BseDI	CCNNGG	3 cut(s)	212, 830, 991
BseGI	GGATG	3 cut(s)	91, 733, 1020
BseLI	CCNNNNNNNGG	5 cut(s)	161, 203, 398, 399, 883
BseMII	CTCAG	4 cut(s)	264, 461, 585, 858
BseNI	ACTGG	2 cut(s)	248, 938
BseRI	GAGGAG	2 cut(s)	683, 797
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	154, 247
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	2 cut(s)	415, 881
BslI	CCNNNNNNNGG	5 cut(s)	161, 203, 398, 399, 883
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	2 cut(s)	415, 881
BsnI	GGCC	2 cut(s)	154, 247
Bso31I	GGTCTC	1 cut(s)	867
Bsp119I	TTCGAA	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	3, 10, 388, 717
BspACI	CCGC	3 cut(s)	18, 541, 818
BspANI	GGCC	2 cut(s)	154, 247
BspCNI	CTCAG	4 cut(s)	265, 462, 586, 857
BspPI	GGATC	3 cut(s)	5, 383, 725
BspT104I	TTCGAA	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	867
BsrBI	CCGCTC	2 cut(s)	20, 541
BsrI	ACTGG	2 cut(s)	248, 938
BssECI	CCNNGG	3 cut(s)	212, 830, 991
BssMI	GATC	4 cut(s)	3, 10, 388, 717
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	991
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	3 cut(s)	138, 213, 831
Bst4CI	ACNGT	4 cut(s)	292, 319, 587, 637
BstBI	TTCGAA	1 cut(s)	662
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	4 cut(s)	273, 470, 594, 844
BstF5I	GGATG	3 cut(s)	91, 733, 1020
BstKTI	GATC	4 cut(s)	6, 13, 391, 720
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	4 cut(s)	3, 10, 388, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	3 cut(s)	138, 213, 831
BstSCI	CCNGG	3 cut(s)	136, 211, 829
BstSFI	CTRYAG	1 cut(s)	636
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	154, 247
BtsCI	GGATG	3 cut(s)	91, 733, 1020
Cac8I	GCNNGC	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	949
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	621, 982
CviAII	CATG	1 cut(s)	117
CviQI	GTAC	2 cut(s)	621, 982
DdeI	CTNAG	4 cut(s)	273, 470, 594, 844
DpnI	GATC	4 cut(s)	5, 12, 390, 719
DpnII	GATC	4 cut(s)	3, 10, 388, 717
EaeI	YGGCCR	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	991
Eco31I	GGTCTC	1 cut(s)	867
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	332, 462
EcoRI	GAATTC	2 cut(s)	207, 835
EcoRII	CCWGG	3 cut(s)	136, 211, 829
EcoT14I	CCWWGG	1 cut(s)	991
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	1 cut(s)	120
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	2 cut(s)	415, 881
FatI	CATG	1 cut(s)	116
FokI	GGATG	3 cut(s)	98, 740, 1007
FspBI	CTAG	2 cut(s)	159, 258
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	3 cut(s)	252, 557, 955
HaeIII	GGCC	2 cut(s)	154, 247
HapII	CCGG	1 cut(s)	854
HgaI	GACGC	1 cut(s)	949
Hin1II	CATG	1 cut(s)	120
HindIII	AAGCTT	3 cut(s)	368, 764, 772
HinfI	GANTC	6 cut(s)	40, 61, 403, 434, 659, 799
HpaII	CCGG	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	322, 359
Hpy188I	TCNGA	5 cut(s)	24, 408, 471, 618, 847
Hpy188III	TCNNGA	3 cut(s)	386, 536, 721
Hpy8I	GTNNAC	2 cut(s)	322, 359
Hpy99I	CGWCG	2 cut(s)	11, 28
HpyAV	CCTTC	6 cut(s)	24, 356, 437, 476, 487, 658
HpyCH4III	ACNGT	4 cut(s)	292, 319, 587, 637
HpyCH4V	TGCA	4 cut(s)	79, 89, 458, 1020
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	4 cut(s)	273, 470, 594, 844
Hsp92II	CATG	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	3, 10, 388, 717
LmnI	GCTCC	4 cut(s)	25, 496, 538, 832
LweI	GCATC	2 cut(s)	76, 708
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	2 cut(s)	159, 258
MaeIII	GTNAC	2 cut(s)	262, 721
MalI	GATC	4 cut(s)	5, 12, 390, 719
MbiI	CCGCTC	2 cut(s)	20, 541
MboI	GATC	4 cut(s)	3, 10, 388, 717
MboII	GAAGA	2 cut(s)	443, 743
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	385
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	4 cut(s)	506, 513, 791, 1027
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	3 cut(s)	138, 213, 831
MvaI	CCWGG	3 cut(s)	138, 213, 831
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	4 cut(s)	3, 10, 388, 717
NlaIII	CATG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	5 cut(s)	40, 61, 434, 659, 799
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp6I	CCWGG	3 cut(s)	136, 211, 829
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	3 cut(s)	136, 211, 829
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	622, 983
RsaNI	GTAC	2 cut(s)	621, 982
SaqAI	TTAA	4 cut(s)	506, 513, 791, 1027
Sau3AI	GATC	4 cut(s)	3, 10, 388, 717
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	3 cut(s)	138, 213, 831
SduI	GDGCHC	1 cut(s)	385
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	2 cut(s)	76, 708
SfcI	CTRYAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	662
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	384, 862
SmoI	CTYRAG	2 cut(s)	384, 862
SsiI	CCGC	3 cut(s)	18, 541, 818
SspMI	CTAG	2 cut(s)	159, 258
StyD4I	CCNGG	3 cut(s)	136, 211, 829
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	4 cut(s)	292, 319, 587, 637
TaqI	TCGA	3 cut(s)	6, 133, 662
TatI	WGTACW	1 cut(s)	981
TfiI	GAWTC	5 cut(s)	40, 61, 434, 659, 799
Tru1I	TTAA	4 cut(s)	506, 513, 791, 1027
Tru9I	TTAA	4 cut(s)	506, 513, 791, 1027
TseFI	GTSAC	1 cut(s)	721
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	2 cut(s)	322, 744
TspGWI	ACGGA	2 cut(s)	740, 885
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	5 cut(s)	207, 428, 476, 646, 835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	2 cut(s)	159, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.