Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Reverse (-)

5152131 .. 5152570

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATTCCGAAGACAAAAGAGGAATTATTCTCATACGAAATAAATTGGGCTATTTATGAACAGCATGCACTACATGAACGCATGAGACCATGGATTTCGAAGAAGATTACGGAGTTTCTGGGAGAGGAAGAGACTACGCTGGTAGATTACATTGTATCTAGTACTCAGGAACATGTCGGAGCAGAACGCATGCTCCAGCTGCTTCAATCCATTTTAGACGAAGAAGCTGAAATGTTTGTGCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTCGAGACAGGTCTGGCTTCAAGAACAAGAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

105

Amino Acids

12.42

Weight (kDa)

5.22

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	3 cut(s)	206, 269, 300
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	199, 227
AluI	AGCT	2 cut(s)	199, 227
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	3 cut(s)	79, 125, 278
ApeKI	GCWGC	1 cut(s)	199
AsuII	TTCGAA	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	79, 125, 278
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	163
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	243
BsmAI	GTCTC	3 cut(s)	79, 125, 278
Bso31I	GGTCTC	1 cut(s)	79
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	66, 191
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	261
BstMAI	GTCTC	3 cut(s)	79, 125, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNSI	RCATGY	3 cut(s)	68, 176, 193
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	66, 191
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	6 cut(s)	65, 74, 82, 90, 173, 190
CviJI	RGCY	4 cut(s)	50, 199, 227, 296
CviKI_1	RGCY	4 cut(s)	50, 199, 227, 296
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
FaiI	YATR	8 cut(s)	34, 57, 66, 75, 83, 91, 174, 191
FatI	CATG	6 cut(s)	64, 73, 81, 89, 172, 189
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	1 cut(s)	179
Hin1II	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
HinfI	GANTC	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	9, 179
Hpy188III	TCNNGA	4 cut(s)	167, 244, 283, 300
HpyAV	CCTTC	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
LmnI	GCTCC	2 cut(s)	179, 198
LpnPI	CCDG	6 cut(s)	104, 125, 152, 209, 273, 278
Lsp1109I	GCAGC	1 cut(s)	186
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	159
MboII	GAAGA	5 cut(s)	22, 112, 115, 140, 233
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	3 cut(s)	23, 43, 270
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	13, 118, 246
MseI	TTAA	2 cut(s)	273, 313
MspA1I	CMGCKG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	199
NcoI	CCATGG	1 cut(s)	89
NlaIII	CATG	6 cut(s)	68, 77, 85, 93, 176, 193
NspI	RCATGY	3 cut(s)	68, 176, 193
NspV	TTCGAA	1 cut(s)	98
PaeI	GCATGC	2 cut(s)	68, 193
PciI	ACATGT	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	201
PscI	ACATGT	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	273, 313
SatI	GCNGC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	4 cut(s)	201, 229, 282, 292
SfaNI	GCATC	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SphI	GCATGC	2 cut(s)	68, 193
Sse9I	AATT	3 cut(s)	23, 43, 270
SspMI	CTAG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	89
TaqI	TCGA	2 cut(s)	98, 282
TasI	AATT	3 cut(s)	23, 43, 270
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	273, 313
Tru9I	TTAA	2 cut(s)	273, 313
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	72, 90
TspGWI	ACGGA	1 cut(s)	125
XceI	RCATGY	3 cut(s)	68, 176, 193
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.