Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Reverse (-)

2488011 .. 2492781

Gene Structure 4771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2826 bp

ATGGCCGACGATCCTCCTACTCCGGCGACGCAAGACCCGAATCCCCAACCCGATAACCCGAATCCCCAATCCAAACAACCCGATCCCCCACCCGCTTCCACACCACCACCACCACCGCAACTATCATCCACCCCAATCCAATTAAACCCCAATCCAAACAATCCGCCTCTAGTTTCTCTGCCGCCGCCGCCGCCGCAGCAGCCGTCGGTCTCTTACGCCCCGCAACCAGTCTCCACCGCCTTCGCCGTTCCTCCGGCCGCGCCATCTTTCCGGCCGGTTCCTCAGTTCTCTCCATTACCGAATTATCAAACTCCCGGCGTCCCTCCTCCGGGTGTCAGCTCCGGGGCTCCGATGGTTCCCGGTGCTCCGGTGCCGGTGCCGCAACATATGATGCATTATCAGATGCAACAGCCGATGAGACCCTACGCGCCAATGCCGAATGGCTACTCAGCTCCGCCGCAGGGCACCATTCCTCCGCCTGGACTTATTCGTTATCCCTCTCCATATCCTACAATGCTTCGACCTGGTTTTCCCTCACGGCCGCCGGGAGGAATTGGTTTGCTTCCATCTGTACAGCGCGCTCCTATGCTGGGTATTCCTGGGGTTCGCCCCGTTATGCCTCCTGTTGTTAGGCCAGCTGTTCCTAGTGTTACTCCAGCTGAGAAACCACAAACAACCGTCTATGTTGGCAAGATAGCCCCGACAGTAAACAATGATTTTATGTTATATCTCCTTCAGTTATGTGGACCTGTCAAGAGTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGATTTTGTGATTTTGAATCTGCTGAAGGGGTTCTTCGTGCATTACGCCTTCTGAGTAAATTCAACATCGATGGGCAGGAGCTGGTGTTAAATGTAAATCAAGCAACAAGAGAGTATCTAGAGCGGTTTGTTGAAAAGAAAACTGAAAATTCAAAGAAGCTGAAAGACACTCAAGCTGAGGGAGATGATAAAGAGGGTGAGAGTAACGTTGATAAGACTGCAGTTCCAAATTCTGTTGTGGATTCGAAGGCGGAGGATAGTAATACAGGGAACAAAGAAAGCAACACTACGAGCTTTGGGATTGTGACCGATGAAGACAAGGAAGCTGACAGGGTGGCCATGGAGAAGCTTACAAGCTTGATAGAGGAGAGATTAAAAACAAATCCTCTGCCTCCACCGCCTCCACTTGCTCCTGGTGATCGTACTGGGAATTCAATCTCAGAGCTTCCAGCTAAGTCAAGGGATGGAGACCTTGATGTGGATATAACAAGAAATGATGCTTCTGAAGAAAAAAATGATGAAGAGACAACTAGTGACAACAAAGCTGAAAGTGAGCAGGATAGGCCTGAAACAAGCTCACCTGAGAGGAGTAGAAAGCCTGATAAAGGTAGAGAAAGAGACAGAGAGCGAGATGTGAAACAGGAAAAGGAGCGTGAGATTGAAAGATATGAAAGAGAAACAGAGCGAGAACGGATAAGGAAGGAGAGAGAGCAGAGGAGGAGAATTGAGGACGCAGAACGCAAGTTTGAAGAATGTCTCAAAGATTGGGAGTATAGGGAAAGGGAGAAACAGAAACAGCGGCAATATGAAAAGGAGAGGGAGAAAGAACGGGAACGGAAACGGAAGAAAGATATAATTAATGAAGAAGATGATGAGGAAGAAGATTCTAGAAAAAGGTGGCGCAGGAATGTGTGGGAGGAGAAGAGGAAGAGGAGACAGAGGGAGAAGGAAGATGACTTGGCTGACAGATTAAGAGAAGAGGAAGAAATTGCTGAGGCCAACAGGAGGGCTGATCAGGAAAAGCAGCTACAGAAACTGAGAGATGCACTGAAGGCTTCATCTGACCATTTAGTGGGTGGAAGAGAAACGGCAGATTTGGCTGAAGAATCCTGTGTGGAATCGAAAGATATGGCCATTAAACAGGACAATGAGACTGGTTCTGGTCCTGAGAACCATATAGGTGATGGGACTCTACAAAATGGTAACACTGGGGATGAATCAGCCAATACGTCAGAACCCCAGCAGAGCGGGAGTGCCCCAGCCAAAAAGTTGGGTTTTGGTTTAGTTGGCTCTGGGAAACGTACTTCTGTTCCTTCTGTTTTCAACGAGGAGGATGATGATGCACACAAGGACAAAAAGATGAGGCCCCTGGTCCCTATTGACTATTCAACTGAAGAACTACAGGCTGTTGAACCGGTTGCTTCTGGGCAAGCGCCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGGTTCTAAAGAAGAGAAGCACGATGCAGAGAAGGAGAGAAATAGACGTGCCAATGATAGGTCGAGTCAACGGGACAGGGATAGGAATGATGATGACACTAACCGCACTAGAGATGAGAACAAGGAGAAGACTGTTGACCGTGATACAGACCGAGAACATGGGCGGGATAAACCAAGGACAACAGATAATAAGAAGCTTTTGGACGCAAAACAACTGATTGATATGATTCCAAGGACCAAAGAGGAGTTATTCTCATATGAAATTAATTGGGCTATTTATGAAAAGCATGCACTTCATGAGAGAATGAAACCATGGATTTCAAAGAAGATTACAGAGTTTCTTGGAGAGGAAGAAACCACACTGGTAGATTATATTGTATCTAGTACTCAAGAACATGTGGGAGCAGAACGCATGCTACAGCTGCTTCAATCCATTTTAGACGAGGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTAGAGACAGGCTTACCTTCAAAAACAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

942

Amino Acids

106.35

Weight (kDa)

5.29

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	227 - 296	2.5e-08	RNA recognition motif
PWI	PF01480	864 - 927	1.1e-13	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	370, 376, 464
AccB7I	CCANNNNNTGG	1 cut(s)	1876
AccBSI	CCGCTC	2 cut(s)	928, 2052
AccII	CGCG	3 cut(s)	260, 428, 579
AclI	AACGTT	1 cut(s)	1011
AclWI	GGATC	3 cut(s)	5, 77, 770
AcoI	YGGCCR	6 cut(s)	3, 255, 272, 539, 1140, 1935
AcsI	RAATTY	6 cut(s)	863, 952, 1033, 1234, 2245, 2264
AcuI	CTGAAG	6 cut(s)	719, 849, 1329, 1874, 1926, 2217
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	4 cut(s)	573, 1228, 2107, 2674
AflIII	ACRYGT	1 cut(s)	2683
AgeI	ACCGGT	1 cut(s)	2218
AhlI	ACTAGT	1 cut(s)	1334
AjiI	CACGTC	1 cut(s)	2336
AjnI	CCWGG	5 cut(s)	478, 523, 598, 1216, 2172
Alw21I	GWGCWC	2 cut(s)	367, 772
AlwI	GGATC	3 cut(s)	5, 77, 770
AlwNI	CAGNNNCTG	2 cut(s)	886, 1840
ApeKI	GCWGC	7 cut(s)	196, 199, 1828, 2252, 2255, 2258, 2710
ApoI	RAATTY	6 cut(s)	863, 952, 1033, 1234, 2245, 2264
AseI	ATTAAT	2 cut(s)	1662, 2553
AsiGI	ACCGGT	1 cut(s)	2218
Asp700I	GAANNNNTTC	1 cut(s)	834
AspLEI	GCGC	6 cut(s)	262, 430, 579, 581, 1707, 2239
AspS9I	GGNCC	5 cut(s)	746, 1967, 2169, 2176, 2523
AsuC2I	CCSGG	5 cut(s)	315, 330, 343, 360, 546
AsuHPI	GGTGA	4 cut(s)	1013, 1232, 1374, 1997
AsuII	TTCGAA	1 cut(s)	1049
AvaII	GGWCC	4 cut(s)	746, 1967, 2176, 2523
BaeGI	GKGCMC	2 cut(s)	467, 2062
BalI	TGGCCA	2 cut(s)	1142, 1937
BanI	GGYRCC	3 cut(s)	370, 376, 464
BanII	GRGCYC	1 cut(s)	349
BbsI	GAAGAC	2 cut(s)	1125, 2423
Bbv12I	GWGCWC	2 cut(s)	367, 772
BbvCI	CCTCAGC	2 cut(s)	981, 1797
BbvI	GCAGC	7 cut(s)	208, 211, 1840, 2239, 2245, 2267, 2697
BccI	CCATC	7 cut(s)	271, 346, 574, 779, 869, 1262, 1982
BceAI	ACGGC	4 cut(s)	187, 230, 554, 1908
BciT130I	CCWGG	5 cut(s)	480, 525, 600, 1218, 2174
BclI	TGATCA	1 cut(s)	1816
BcnI	CCSGG	5 cut(s)	315, 330, 343, 360, 546
BcuI	ACTAGT	1 cut(s)	1334
BfaI	CTAG	8 cut(s)	170, 645, 795, 923, 1335, 1692, 2397, 2670
BfmI	CTRYAG	6 cut(s)	1023, 1832, 2204, 2253, 2259, 2705
BfoI	RGCGCY	1 cut(s)	2240
BmcAI	AGTACT	1 cut(s)	2674
Bme18I	GGWCC	4 cut(s)	746, 1967, 2176, 2523
BmgBI	CACGTC	1 cut(s)	2336
BmgT120I	GGNCC	5 cut(s)	746, 1967, 2169, 2176, 2523
BmiI	GGNNCC	8 cut(s)	279, 348, 357, 372, 378, 466, 2171, 2178
BmrI	ACTGGG	2 cut(s)	1239, 2022
BmsI	GCATC	7 cut(s)	381, 393, 1291, 1837, 2134, 2302, 2757
BmuI	ACTGGG	2 cut(s)	1239, 2022
BpiI	GAAGAC	2 cut(s)	1125, 2423
BplI	GAGNNNNNCTC	2 cut(s)	2525, 2557
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	2 cut(s)	981, 1797
Bpu14I	TTCGAA	1 cut(s)	1049
BpuEI	CTTGAG	4 cut(s)	756, 960, 2661, 2738
BpuMI	CCSGG	5 cut(s)	315, 330, 343, 360, 546
Bsa29I	ATCGAT	1 cut(s)	873
BsaBI	GATNNNNATC	1 cut(s)	2771
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	3 cut(s)	214, 412, 1266
BsaJI	CCNNGG	7 cut(s)	342, 599, 1143, 2172, 2462, 2519, 2600
BsaWI	WCCGGW	2 cut(s)	367, 2218
BsaXI	ACNNNNNCTCC	4 cut(s)	457, 487, 875, 905
Bse118I	RCCGGY	3 cut(s)	274, 373, 2218
Bse1I	ACTGG	5 cut(s)	227, 1234, 1963, 2017, 2655
Bse8I	GATNNNNATC	1 cut(s)	2771
BseBI	CCWGG	5 cut(s)	480, 525, 600, 1218, 2174
BseCI	ATCGAT	1 cut(s)	873
BseDI	CCNNGG	7 cut(s)	342, 599, 1143, 2172, 2462, 2519, 2600
BseGI	GGATG	5 cut(s)	125, 1273, 2023, 2143, 2772
BseJI	GATNNNNATC	1 cut(s)	2771
BseNI	ACTGG	5 cut(s)	227, 1234, 1963, 2017, 2655
BsePI	GCGCGC	1 cut(s)	577
BseRI	GAGGAG	9 cut(s)	315, 1184, 1405, 1534, 1537, 1736, 1750, 2147, 2546
BseSI	GKGCMC	2 cut(s)	467, 2062
BseX3I	CGGCCG	3 cut(s)	255, 272, 539
BseXI	GCAGC	7 cut(s)	208, 211, 1840, 2239, 2245, 2267, 2697
BseYI	CCCAGC	3 cut(s)	589, 2043, 2062
Bsh1236I	CGCG	3 cut(s)	260, 428, 579
Bsh1285I	CGRYCG	3 cut(s)	258, 275, 542
BshNI	GGYRCC	3 cut(s)	370, 376, 464
BshTI	ACCGGT	1 cut(s)	2218
BshVI	ATCGAT	1 cut(s)	873
BsiEI	CGRYCG	3 cut(s)	258, 275, 542
BsiHKAI	GWGCWC	2 cut(s)	367, 772
BslFI	GGGAC	5 cut(s)	305, 802, 2005, 2162, 2375
BsmFI	GGGAC	5 cut(s)	305, 802, 2005, 2162, 2375
Bso31I	GGTCTC	3 cut(s)	214, 412, 1266
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp1286I	GDGCHC	5 cut(s)	349, 367, 467, 772, 2062
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
Bsp19I	CCATGG	2 cut(s)	1143, 2600
BspDI	ATCGAT	1 cut(s)	873
BspFNI	CGCG	3 cut(s)	260, 428, 579
BspHI	TCATGA	2 cut(s)	2584, 2822
BspLI	GGNNCC	8 cut(s)	279, 348, 357, 372, 378, 466, 2171, 2178
BspMAI	CTGCAG	3 cut(s)	1027, 2257, 2263
BspPI	GGATC	3 cut(s)	5, 77, 770
BspT104I	TTCGAA	1 cut(s)	1049
BspT107I	GGYRCC	3 cut(s)	370, 376, 464
BspTNI	GGTCTC	3 cut(s)	214, 412, 1266
BsrBI	CCGCTC	2 cut(s)	928, 2052
BsrFI	RCCGGY	3 cut(s)	274, 373, 2218
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	5 cut(s)	227, 1234, 1963, 2017, 2655
BssAI	RCCGGY	3 cut(s)	274, 373, 2218
BssECI	CCNNGG	7 cut(s)	342, 599, 1143, 2172, 2462, 2519, 2600
BssHII	GCGCGC	1 cut(s)	577
BssMI	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	4 cut(s)	1143, 2462, 2519, 2600
Bst2UI	CCWGG	5 cut(s)	480, 525, 600, 1218, 2174
Bst4CI	ACNGT	4 cut(s)	679, 706, 2422, 2429
Bst6I	CTCTTC	6 cut(s)	1320, 1721, 1727, 1776, 1879, 2295
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	2267
BstAUI	TGTACA	1 cut(s)	571
BstBI	TTCGAA	1 cut(s)	1049
BstC8I	GCNNGC	6 cut(s)	579, 636, 768, 2235, 2577, 2702
BstDSI	CCRYGG	2 cut(s)	1143, 2600
BstENI	CCTNNNNNAGG	1 cut(s)	1407
BstF5I	GGATG	5 cut(s)	125, 1273, 2023, 2143, 2772
BstFNI	CGCG	3 cut(s)	260, 428, 579
BstH2I	RGCGCY	1 cut(s)	2240
BstHHI	GCGC	6 cut(s)	262, 430, 579, 581, 1707, 2239
BstKTI	GATC	6 cut(s)	13, 85, 778, 1225, 1819, 2822
BstMBI	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
BstMCI	CGRYCG	3 cut(s)	258, 275, 542
BstNI	CCWGG	5 cut(s)	480, 525, 600, 1218, 2174
BstNSI	RCATGY	3 cut(s)	2579, 2687, 2704
BstSFI	CTRYAG	6 cut(s)	1023, 1832, 2204, 2253, 2259, 2705
BstSLI	GKGCMC	2 cut(s)	467, 2062
BstUI	CGCG	3 cut(s)	260, 428, 579
BstV1I	GCAGC	7 cut(s)	208, 211, 1840, 2239, 2245, 2267, 2697
BstV2I	GAAGAC	2 cut(s)	1125, 2423
BstX2I	RGATCY	1 cut(s)	775
BstXI	CCANNNNNNTGG	1 cut(s)	2074
BstYI	RGATCY	1 cut(s)	775
BstZI	CGGCCG	3 cut(s)	255, 272, 539
Bsu15I	ATCGAT	1 cut(s)	873
BsuTUI	ATCGAT	1 cut(s)	873
BtgI	CCRYGG	2 cut(s)	1143, 2600
BtrI	CACGTC	1 cut(s)	2336
BtsCI	GGATG	5 cut(s)	125, 1273, 2023, 2143, 2772
BtsIMutI	CAGTG	3 cut(s)	1850, 2010, 2648
Cac8I	GCNNGC	6 cut(s)	579, 636, 768, 2235, 2577, 2702
CaiI	CAGNNNCTG	2 cut(s)	886, 1840
CciI	TCATGA	2 cut(s)	2584, 2822
CfoI	GCGC	6 cut(s)	262, 430, 579, 581, 1707, 2239
Cfr10I	RCCGGY	3 cut(s)	274, 373, 2218
Cfr13I	GGNCC	5 cut(s)	746, 1967, 2169, 2176, 2523
ClaI	ATCGAT	1 cut(s)	873
CseI	GACGC	4 cut(s)	37, 307, 1544, 2501
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	4 cut(s)	572, 1227, 2106, 2673
CspAI	ACCGGT	1 cut(s)	2218
CspCI	CAANNNNNGTGG	2 cut(s)	2229, 2264
CviAII	CATG	8 cut(s)	1144, 2447, 2576, 2585, 2601, 2684, 2701, 2823
CviQI	GTAC	4 cut(s)	572, 1227, 2106, 2673
DpnI	GATC	6 cut(s)	12, 84, 777, 1224, 1818, 2821
DpnII	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
EaeI	YGGCCR	6 cut(s)	3, 255, 272, 539, 1140, 1935
EagI	CGGCCG	3 cut(s)	255, 272, 539
Eam1104I	CTCTTC	6 cut(s)	1320, 1721, 1727, 1776, 1879, 2295
EarI	CTCTTC	6 cut(s)	1320, 1721, 1727, 1776, 1879, 2295
EciI	GGCGGA	4 cut(s)	153, 444, 465, 1070
EclXI	CGGCCG	3 cut(s)	255, 272, 539
Eco130I	CCWWGG	4 cut(s)	1143, 2462, 2519, 2600
Eco147I	AGGCCT	1 cut(s)	1369
Eco24I	GRGCYC	1 cut(s)	349
Eco31I	GGTCTC	3 cut(s)	214, 412, 1266
Eco47I	GGWCC	4 cut(s)	746, 1967, 2176, 2523
Eco52I	CGGCCG	3 cut(s)	255, 272, 539
Eco57I	CTGAAG	6 cut(s)	719, 849, 1329, 1874, 1926, 2217
EcoNI	CCTNNNNNAGG	1 cut(s)	1407
EcoO109I	RGGNCCY	1 cut(s)	2169
EcoRI	GAATTC	1 cut(s)	1234
EcoRII	CCWGG	5 cut(s)	478, 523, 598, 1216, 2172
EcoT14I	CCWWGG	4 cut(s)	1143, 2462, 2519, 2600
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	4 cut(s)	1143, 2462, 2519, 2600
FaeI	CATG	8 cut(s)	1147, 2450, 2579, 2588, 2604, 2687, 2704, 2826
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	5 cut(s)	305, 802, 2005, 2162, 2375
FatI	CATG	8 cut(s)	1143, 2446, 2575, 2584, 2600, 2683, 2700, 2822
FauI	CCCGC	4 cut(s)	100, 228, 2045, 2445
FauNDI	CATATG	2 cut(s)	387, 2545
FbaI	TGATCA	1 cut(s)	1816
FokI	GGATG	5 cut(s)	112, 1280, 2030, 2150, 2779
FriOI	GRGCYC	1 cut(s)	349
FspBI	CTAG	8 cut(s)	170, 645, 795, 923, 1335, 1692, 2397, 2670
GlaI	GCGC	6 cut(s)	261, 429, 578, 580, 1706, 2238
GsaI	CCCAGC	3 cut(s)	593, 2047, 2066
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	1 cut(s)	2240
HgaI	GACGC	4 cut(s)	37, 307, 1544, 2501
HhaI	GCGC	6 cut(s)	262, 430, 579, 581, 1707, 2239
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	8 cut(s)	1147, 2450, 2579, 2588, 2604, 2687, 2704, 2826
Hin6I	GCGC	6 cut(s)	260, 428, 577, 579, 1705, 2237
HinP1I	GCGC	6 cut(s)	260, 428, 577, 579, 1705, 2237
HincII	GTYRAC	2 cut(s)	2357, 2425
HindII	GTYRAC	2 cut(s)	2357, 2425
HindIII	AAGCTT	3 cut(s)	1151, 1159, 2483
HphI	GGTGA	4 cut(s)	1013, 1232, 1374, 1997
Hpy166II	GTNNAC	4 cut(s)	709, 746, 2357, 2425
Hpy188I	TCNGA	7 cut(s)	351, 402, 858, 1246, 1309, 1867, 2038
Hpy8I	GTNNAC	4 cut(s)	709, 746, 2357, 2425
Hpy99I	CGWCG	3 cut(s)	11, 31, 208
HpyCH4III	ACNGT	4 cut(s)	679, 706, 2422, 2429
HpyCH4IV	ACGT	4 cut(s)	1011, 2033, 2104, 2335
HpySE526I	ACGT	4 cut(s)	1011, 2033, 2104, 2335
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	8 cut(s)	1147, 2450, 2579, 2588, 2604, 2687, 2704, 2826
HspAI	GCGC	6 cut(s)	260, 428, 577, 579, 1705, 2237
Ksp22I	TGATCA	1 cut(s)	1816
Kzo9I	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
LmnI	GCTCC	9 cut(s)	344, 352, 370, 457, 586, 883, 1219, 1453, 2690
Lsp1109I	GCAGC	7 cut(s)	208, 211, 1840, 2239, 2245, 2267, 2697
LweI	GCATC	7 cut(s)	381, 393, 1291, 1837, 2134, 2302, 2757
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	8 cut(s)	170, 645, 795, 923, 1335, 1692, 2397, 2670
MaeII	ACGT	4 cut(s)	1011, 2033, 2104, 2335
MaeIII	GTNAC	5 cut(s)	649, 1007, 1108, 1337, 2006
MalI	GATC	6 cut(s)	12, 84, 777, 1224, 1818, 2821
MbiI	CCGCTC	2 cut(s)	928, 2052
MboI	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	5 cut(s)	349, 367, 467, 772, 2062
MlsI	TGGCCA	2 cut(s)	1142, 1937
MluNI	TGGCCA	2 cut(s)	1142, 1937
MlyI	GAGTC	3 cut(s)	784, 1987, 2362
MmeI	TCCRAC	1 cut(s)	740
Mox20I	TGGCCA	2 cut(s)	1142, 1937
Mph1103I	ATGCAT	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	834
MscI	TGGCCA	2 cut(s)	1142, 1937
MseI	TTAA	8 cut(s)	143, 893, 1178, 1662, 1775, 1941, 2553, 2784
MslI	CAYNNNNRTG	1 cut(s)	1983
Msp20I	TGGCCA	2 cut(s)	1142, 1937
MspA1I	CMGCKG	5 cut(s)	638, 659, 1603, 2258, 2710
MvaI	CCWGG	5 cut(s)	480, 525, 600, 1218, 2174
MvnI	CGCG	3 cut(s)	260, 428, 579
NciI	CCSGG	5 cut(s)	315, 330, 343, 360, 546
NcoI	CCATGG	2 cut(s)	1143, 2600
NdeI	CATATG	2 cut(s)	387, 2545
NdeII	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
NlaIII	CATG	8 cut(s)	1147, 2450, 2579, 2588, 2604, 2687, 2704, 2826
NlaIV	GGNNCC	8 cut(s)	279, 348, 357, 372, 378, 466, 2171, 2178
NmuCI	GTSAC	2 cut(s)	1108, 1337
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	3 cut(s)	2579, 2687, 2704
NspV	TTCGAA	1 cut(s)	1049
PaeI	GCATGC	2 cut(s)	2579, 2704
PagI	TCATGA	2 cut(s)	2584, 2822
PauI	GCGCGC	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	1369
PciI	ACATGT	1 cut(s)	2683
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	9 cut(s)	40, 61, 821, 1046, 1688, 1910, 1922, 2021, 2515
PflMI	CCANNNNNTGG	1 cut(s)	1876
PinAI	ACCGGT	1 cut(s)	2218
PleI	GAGTC	3 cut(s)	784, 1987, 2361
PpsI	GAGTC	3 cut(s)	784, 1987, 2361
PscI	ACATGT	1 cut(s)	2683
PshBI	ATTAAT	2 cut(s)	1662, 2553
Psp1406I	AACGTT	1 cut(s)	1011
Psp6I	CCWGG	5 cut(s)	478, 523, 598, 1216, 2172
PspFI	CCCAGC	3 cut(s)	589, 2043, 2062
PspGI	CCWGG	5 cut(s)	478, 523, 598, 1216, 2172
PspN4I	GGNNCC	8 cut(s)	279, 348, 357, 372, 378, 466, 2171, 2178
PspPI	GGNCC	5 cut(s)	746, 1967, 2169, 2176, 2523
PsrI	GAACNNNNNNTAC	2 cut(s)	2688, 2720
PstI	CTGCAG	3 cut(s)	1027, 2257, 2263
PstNI	CAGNNNCTG	2 cut(s)	886, 1840
PsuI	RGATCY	1 cut(s)	775
PteI	GCGCGC	1 cut(s)	577
PvuII	CAGCTG	4 cut(s)	638, 659, 2258, 2710
RsaI	GTAC	4 cut(s)	573, 1228, 2107, 2674
RsaNI	GTAC	4 cut(s)	572, 1227, 2106, 2673
RseI	CAYNNNNRTG	1 cut(s)	1983
SaqAI	TTAA	8 cut(s)	143, 893, 1178, 1662, 1775, 1941, 2553, 2784
Sau3AI	GATC	6 cut(s)	10, 82, 775, 1222, 1816, 2819
Sau96I	GGNCC	5 cut(s)	746, 1967, 2169, 2176, 2523
ScaI	AGTACT	1 cut(s)	2674
SchI	GAGTC	3 cut(s)	784, 1987, 2362
SduI	GDGCHC	5 cut(s)	349, 367, 467, 772, 2062
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	7 cut(s)	381, 393, 1291, 1837, 2134, 2302, 2757
SfcI	CTRYAG	6 cut(s)	1023, 1832, 2204, 2253, 2259, 2705
SfuI	TTCGAA	1 cut(s)	1049
SinI	GGWCC	4 cut(s)	746, 1967, 2176, 2523
SmiMI	CAYNNNNRTG	1 cut(s)	1983
SmlI	CTYRAG	4 cut(s)	771, 975, 2676, 2753
SmoI	CTYRAG	4 cut(s)	771, 975, 2676, 2753
SpeI	ACTAGT	1 cut(s)	1334
SphI	GCATGC	2 cut(s)	2579, 2704
SseBI	AGGCCT	1 cut(s)	1369
SspMI	CTAG	8 cut(s)	170, 645, 795, 923, 1335, 1692, 2397, 2670
StuI	AGGCCT	1 cut(s)	1369
StyI	CCWWGG	4 cut(s)	1143, 2462, 2519, 2600
TaaI	ACNGT	4 cut(s)	679, 706, 2422, 2429
TaiI	ACGT	4 cut(s)	1014, 2036, 2107, 2338
TaqI	TCGA	5 cut(s)	520, 873, 1049, 1925, 2351
TaqII	GACCGA	3 cut(s)	196, 1127, 2454
TatI	WGTACW	2 cut(s)	571, 2672
TfiI	GAWTC	9 cut(s)	40, 61, 821, 1046, 1688, 1910, 1922, 2021, 2515
Tru1I	TTAA	8 cut(s)	143, 893, 1178, 1662, 1775, 1941, 2553, 2784
Tru9I	TTAA	8 cut(s)	143, 893, 1178, 1662, 1775, 1941, 2553, 2784
TscAI	CASTG	3 cut(s)	1857, 2017, 2655
TseFI	GTSAC	2 cut(s)	1108, 1337
TseI	GCWGC	7 cut(s)	196, 199, 1828, 2252, 2255, 2258, 2710
Tsp45I	GTSAC	2 cut(s)	1108, 1337
TspGWI	ACGGA	3 cut(s)	1510, 1654, 1660
TspRI	CASTG	3 cut(s)	1857, 2017, 2655
Van91I	CCANNNNNTGG	1 cut(s)	1876
VpaK11BI	GGWCC	4 cut(s)	746, 1967, 2176, 2523
VspI	ATTAAT	2 cut(s)	1662, 2553
XagI	CCTNNNNNAGG	1 cut(s)	1407
XapI	RAATTY	6 cut(s)	863, 952, 1033, 1234, 2245, 2264
XbaI	TCTAGA	2 cut(s)	922, 1691
XceI	RCATGY	3 cut(s)	2579, 2687, 2704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1877, 1985
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	8 cut(s)	170, 645, 795, 923, 1335, 1692, 2397, 2670
ZrmI	AGTACT	1 cut(s)	2674
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.