Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Forward (+)

63857368 .. 63862674

Gene Structure 5307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2832 bp

ATGGCCGACGATCCTCCTACTCCGGCGACGCAAGACCCGAATCCCCAACCCGATAACCCGAATCCCCAATCCAAACAACCCGATCCCCCACCCGCTTCTACACCGCCACCACCGCAACCGCAACCATCATCCACCCCAATCCAATTAAACCCCAATCCCAATCCCAATCCCAATCCGCCTCTAGTTTCTCTGCCGCCGCCGCCGTCGGTCTCTTACGCCCCGCAACCGGTCTCCACCGCCTTCGCCGTTCCTCCGGCCGCGCCATCTTTCCGGCCGGTTCCTCAGTTCTCTCCATTACCGAATTATCAAACTCCCGGCGTCCCTCCGCCGGGTGTCAGCTCCGGGGCCCCGATGGTTCCCGGTGCTCCGGTGCCGGTGCCGGTGCCGCAACATATGATGCATTATCAGATGCAACAGCCGATGAGACCCTACGCGCCAATGCCGAATGGCTACTCAGCTCCGCCGCAGGGCACCATTCCTCCGCCTGGACTTATTCGTTATCCCTCTCCATATCCTACAATGCTTCGACCTGGTTTTCCCTCACGGCCGCTGGGAGGAATTGGTTTGCTTCCATCTGTACAGCGTGCTCCTATGCTGGGTATTCCTGGGGTTCGCCCCGTTATGCCTCCTGTTATTAGGCCAGCTGTTCCTAGTGTTACTCCAACTGAGAAACCACAAACAACCGTCTATGTTGGCAAGATAGCCCCAACAGTAAACAATGATTTTATGTTATATCTCCTTCAGTTATGTGGACCTGTCAAGAGTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGATTTTGTGATTTTGAATCTGCTGAAGGGGTTCTTCGTGCATTACGCCTTCTGAGTAAATTCAACATCGATGGGCAGGAGCTGGTGTTAAATGTAAATCAAGCAACAAGAGAGTATCTAGAGCGGTTTGTTGAAAAGAAAACTGAAAATTCAAAGAAGCTGAAAGACACTCAAGCTGAGGGAGATGAGAAAGAGGGTGAGAGTAACGTTGATAAGACTGCAGTTCCAAATTCTGTTGTGGATTCGAAGGCAGAGGATAGTAATACAGGGAACAAAGAAAGCAACACTACGAACTTTGGGATTGTGACCGATGAAGACAAGGAAGCTGACAGGGTGGCCATGGAGAAGCTTACAAGCTTGATAGAGGAGAGATTAAAAACAAATCCTCTGCCTCCACCGCCTCCACTTGCTCCTGGTGATCGTACTGGGAATTCAATCTCAGACCTTCCAGCTAAGTCAAGGGATGGAGACCTTGATGTGGATATAACAAGAAATGATGCTTCTGAAGAAAAAAATGATGAAGAGACAACTAGTGACAACAAAGCTGAAAGTGAGCAGGATAGGCCTGAAACAAGCTCACCTGAGAGGAGTAGAAAGCCTGATAAAAGTAGAGAAAGAGACAGAGAGCGAGATGTGAAACAGGAAAAGGAGCGTGAGATTGAAAGATATGAAAGAGAAACAGAGCGAGAACGGATAAGGAAGGAGAGAGAGCAGAGGAGGAGAATTGAGGACGCAGAACGCAAGTTTGAAGAATGTCTCAAAGATTGGGAGTATAGGGAAAGGGAGAAACAGAAACAGCGGCAATATGAAAAGGAGAGGGAGAAAGAACGGGAACGGAAACGGAAGAAAGATATAATTAATGAAGAAGATGATGAGGAAGAAGATTCTAGAAAAAGGTGGCGCAGGAATGCGTGGGAGGAGAAGAGGAAGAGGAGACAGAGGGAGAAGGAAGATGACTTGGCTGACAGATTAAGAGAAGAGGAAGAAATTGCTGAGGCCAACAGGAGGGCTGATCAGGAAAAACAGCTACAGCAACTGAGAGATGCACTGAAGGCTTCATCTGACCATTTAGTGGATGGAAGAGAAACGGCAGATTTGGCTGAAGAATCCTGTGTGGAATCGAAAGATATGGCCATTAAACAGGACAATGAGACTGGTTCTGGTCCTGAGAACCATATAGGTGATGGGACTCTACAAAATGGTAACACTGGGGATGAATCAACCAATACATCAGAACCCCAGCAGAGTGGGAGTGCCCCAGCCAAAAAGTTGGGTTTTGGTTTAGTTGGCTCTGGGAAACGTACTTCTGTTCCTTCTGTTTTCAACGAGGAGGATGATGATGCACACAAGGACAAAAAGATGAGGCCCCTGGTCCCTATTGACTATTCAACTGAAGAACTACAGGCTGTCGAACCGGTTGCTTCTGGGCAAGCGCCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGGTTCTAAAGAAGAGAAGCACGATGCAGAGAAGGAGAGAAATAGACGTGCCAATGATAGGTCGAGTCAACGGGACAGGGATAGGAATGATGATGACACTAACCGCACTAGAGATGAGAACAAGGAGAAGACTGTTGACCGTGATACAGACCGAGAACATGGGCGGGATAAACCAAGGACAACAGATAATAAGAAGCTTTTGGACGCAAAACAACTGATTGATATGATTCCAAGGACCAAAGAGGAGTTATTCTCATATGAAATAAATTGGGCTATTTATGAAAAGCATGCACTTCATGAGAGAATGAAACCATGGATTTCAAAGAAGATTACAGAGTTTCTTGGAGAGGAAGAAACCACACTGGTAGATTATATTGTATCTAGTACTCAAGAACATGTGGGAGCAGAACGCATGCTACAGCTGCTTCAATCCATTTTAGACGAGGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTAGAGACAGGCTTACCTTCAAAAACAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

943

Amino Acids

106.69

Weight (kDa)

5.24

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	229 - 298	2.5e-08	RNA recognition motif
PWI	PF01480	866 - 929	1.1e-13	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	370, 376, 382, 470
AccB7I	CCANNNNNTGG	1 cut(s)	1882
AccBSI	CCGCTC	1 cut(s)	934
AccII	CGCG	2 cut(s)	260, 434
AclI	AACGTT	1 cut(s)	1017
AclWI	GGATC	3 cut(s)	5, 77, 776
AcoI	YGGCCR	6 cut(s)	3, 255, 272, 545, 1146, 1941
AcsI	RAATTY	6 cut(s)	869, 958, 1039, 1240, 2251, 2270
AcuI	CTGAAG	6 cut(s)	725, 855, 1335, 1880, 1932, 2223
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	4 cut(s)	579, 1234, 2113, 2680
AflIII	ACRYGT	1 cut(s)	2689
AgeI	ACCGGT	2 cut(s)	226, 2224
AhlI	ACTAGT	1 cut(s)	1340
AjiI	CACGTC	1 cut(s)	2342
AjnI	CCWGG	5 cut(s)	484, 529, 604, 1222, 2178
Alw21I	GWGCWC	3 cut(s)	367, 589, 778
AlwI	GGATC	3 cut(s)	5, 77, 776
AlwNI	CAGNNNCTG	2 cut(s)	892, 1846
ApaI	GGGCCC	1 cut(s)	349
ApeKI	GCWGC	4 cut(s)	2258, 2261, 2264, 2716
ApoI	RAATTY	6 cut(s)	869, 958, 1039, 1240, 2251, 2270
AseI	ATTAAT	1 cut(s)	1668
AsiGI	ACCGGT	2 cut(s)	226, 2224
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	4 cut(s)	262, 436, 1713, 2245
AspS9I	GGNCC	7 cut(s)	345, 346, 752, 1973, 2175, 2182, 2529
AsuC2I	CCSGG	4 cut(s)	315, 330, 343, 360
AsuHPI	GGTGA	4 cut(s)	1019, 1238, 1380, 2003
AsuII	TTCGAA	1 cut(s)	1055
AvaII	GGWCC	4 cut(s)	752, 1973, 2182, 2529
BaeGI	GKGCMC	3 cut(s)	349, 473, 2068
BalI	TGGCCA	2 cut(s)	1148, 1943
BanI	GGYRCC	4 cut(s)	370, 376, 382, 470
BanII	GRGCYC	1 cut(s)	349
BbsI	GAAGAC	2 cut(s)	1131, 2429
Bbv12I	GWGCWC	3 cut(s)	367, 589, 778
BbvCI	CCTCAGC	2 cut(s)	987, 1803
BbvI	GCAGC	4 cut(s)	2245, 2251, 2273, 2703
BccI	CCATC	9 cut(s)	133, 271, 346, 580, 785, 875, 1268, 1880, 1988
BceAI	ACGGC	4 cut(s)	187, 230, 560, 1914
BcgI	CGANNNNNNTGC	2 cut(s)	2210, 2244
BciT130I	CCWGG	5 cut(s)	486, 531, 606, 1224, 2180
BclI	TGATCA	1 cut(s)	1822
BcnI	CCSGG	4 cut(s)	315, 330, 343, 360
BcuI	ACTAGT	1 cut(s)	1340
BfaI	CTAG	8 cut(s)	182, 651, 801, 929, 1341, 1698, 2403, 2676
BfmI	CTRYAG	6 cut(s)	1029, 1838, 2210, 2259, 2265, 2711
BfoI	RGCGCY	1 cut(s)	2246
BmcAI	AGTACT	1 cut(s)	2680
Bme1390I	CCNGG	9 cut(s)	315, 330, 343, 360, 486, 531, 606, 1224, 2180
Bme18I	GGWCC	4 cut(s)	752, 1973, 2182, 2529
BmgBI	CACGTC	1 cut(s)	2342
BmgT120I	GGNCC	7 cut(s)	345, 346, 752, 1973, 2175, 2182, 2529
BmrFI	CCNGG	9 cut(s)	315, 330, 343, 360, 486, 531, 606, 1224, 2180
BmrI	ACTGGG	2 cut(s)	1245, 2028
BmsI	GCATC	7 cut(s)	387, 399, 1297, 1843, 2140, 2308, 2763
BmuI	ACTGGG	2 cut(s)	1245, 2028
BpiI	GAAGAC	2 cut(s)	1131, 2429
BplI	GAGNNNNNCTC	2 cut(s)	2531, 2563
Bpu10I	CCTNAGC	2 cut(s)	987, 1803
Bpu14I	TTCGAA	1 cut(s)	1055
BpuEI	CTTGAG	4 cut(s)	762, 966, 2667, 2744
BpuMI	CCSGG	4 cut(s)	315, 330, 343, 360
Bsa29I	ATCGAT	1 cut(s)	879
BsaBI	GATNNNNATC	1 cut(s)	2777
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	4 cut(s)	214, 235, 418, 1272
BsaJI	CCNNGG	7 cut(s)	342, 605, 1149, 2178, 2468, 2525, 2606
BsaWI	WCCGGW	3 cut(s)	226, 367, 2224
BsaXI	ACNNNNNCTCC	4 cut(s)	463, 493, 881, 911
Bse118I	RCCGGY	5 cut(s)	226, 274, 373, 379, 2224
Bse1I	ACTGG	4 cut(s)	1240, 1969, 2023, 2661
Bse8I	GATNNNNATC	1 cut(s)	2777
BseBI	CCWGG	5 cut(s)	486, 531, 606, 1224, 2180
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	7 cut(s)	342, 605, 1149, 2178, 2468, 2525, 2606
BseGI	GGATG	6 cut(s)	128, 1279, 1891, 2029, 2149, 2778
BseJI	GATNNNNATC	1 cut(s)	2777
BseNI	ACTGG	4 cut(s)	1240, 1969, 2023, 2661
BseRI	GAGGAG	8 cut(s)	1190, 1411, 1540, 1543, 1742, 1756, 2153, 2552
BseSI	GKGCMC	3 cut(s)	349, 473, 2068
BseX3I	CGGCCG	3 cut(s)	255, 272, 545
BseXI	GCAGC	4 cut(s)	2245, 2251, 2273, 2703
BseYI	CCCAGC	4 cut(s)	550, 595, 2049, 2068
Bsh1236I	CGCG	2 cut(s)	260, 434
Bsh1285I	CGRYCG	3 cut(s)	258, 275, 548
BshNI	GGYRCC	4 cut(s)	370, 376, 382, 470
BshTI	ACCGGT	2 cut(s)	226, 2224
BshVI	ATCGAT	1 cut(s)	879
BsiEI	CGRYCG	3 cut(s)	258, 275, 548
BsiHKAI	GWGCWC	3 cut(s)	367, 589, 778
BslFI	GGGAC	5 cut(s)	305, 808, 2011, 2168, 2381
BsmFI	GGGAC	5 cut(s)	305, 808, 2011, 2168, 2381
BsmI	GAATGC	1 cut(s)	1723
Bso31I	GGTCTC	4 cut(s)	214, 235, 418, 1272
Bsp119I	TTCGAA	1 cut(s)	1055
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	6 cut(s)	349, 367, 473, 589, 778, 2068
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
Bsp19I	CCATGG	2 cut(s)	1149, 2606
BspDI	ATCGAT	1 cut(s)	879
BspFNI	CGCG	2 cut(s)	260, 434
BspHI	TCATGA	2 cut(s)	2590, 2828
BspMAI	CTGCAG	3 cut(s)	1033, 2263, 2269
BspPI	GGATC	3 cut(s)	5, 77, 776
BspT104I	TTCGAA	1 cut(s)	1055
BspT107I	GGYRCC	4 cut(s)	370, 376, 382, 470
BspTNI	GGTCTC	4 cut(s)	214, 235, 418, 1272
BsrBI	CCGCTC	1 cut(s)	934
BsrFI	RCCGGY	5 cut(s)	226, 274, 373, 379, 2224
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	4 cut(s)	1240, 1969, 2023, 2661
BssAI	RCCGGY	5 cut(s)	226, 274, 373, 379, 2224
BssECI	CCNNGG	7 cut(s)	342, 605, 1149, 2178, 2468, 2525, 2606
BssMI	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	4 cut(s)	1149, 2468, 2525, 2606
Bst2UI	CCWGG	5 cut(s)	486, 531, 606, 1224, 2180
Bst4CI	ACNGT	4 cut(s)	685, 712, 2428, 2435
Bst6I	CTCTTC	6 cut(s)	1326, 1727, 1733, 1782, 1885, 2301
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	2273
BstAUI	TGTACA	1 cut(s)	577
BstBI	TTCGAA	1 cut(s)	1055
BstC8I	GCNNGC	6 cut(s)	585, 642, 774, 2241, 2583, 2708
BstDSI	CCRYGG	2 cut(s)	1149, 2606
BstF5I	GGATG	6 cut(s)	128, 1279, 1891, 2029, 2149, 2778
BstFNI	CGCG	2 cut(s)	260, 434
BstH2I	RGCGCY	1 cut(s)	2246
BstHHI	GCGC	4 cut(s)	262, 436, 1713, 2245
BstKTI	GATC	6 cut(s)	13, 85, 784, 1231, 1825, 2828
BstMBI	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
BstMCI	CGRYCG	3 cut(s)	258, 275, 548
BstNI	CCWGG	5 cut(s)	486, 531, 606, 1224, 2180
BstNSI	RCATGY	3 cut(s)	2585, 2693, 2710
BstSCI	CCNGG	9 cut(s)	313, 328, 341, 358, 484, 529, 604, 1222, 2178
BstSFI	CTRYAG	6 cut(s)	1029, 1838, 2210, 2259, 2265, 2711
BstSLI	GKGCMC	3 cut(s)	349, 473, 2068
BstUI	CGCG	2 cut(s)	260, 434
BstV1I	GCAGC	4 cut(s)	2245, 2251, 2273, 2703
BstV2I	GAAGAC	2 cut(s)	1131, 2429
BstX2I	RGATCY	1 cut(s)	781
BstXI	CCANNNNNNTGG	2 cut(s)	2057, 2080
BstYI	RGATCY	1 cut(s)	781
BstZI	CGGCCG	3 cut(s)	255, 272, 545
Bsu15I	ATCGAT	1 cut(s)	879
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	2 cut(s)	1149, 2606
BtrI	CACGTC	1 cut(s)	2342
BtsCI	GGATG	6 cut(s)	128, 1279, 1891, 2029, 2149, 2778
BtsIMutI	CAGTG	3 cut(s)	1856, 2016, 2654
Cac8I	GCNNGC	6 cut(s)	585, 642, 774, 2241, 2583, 2708
CaiI	CAGNNNCTG	2 cut(s)	892, 1846
CciI	TCATGA	2 cut(s)	2590, 2828
CfoI	GCGC	4 cut(s)	262, 436, 1713, 2245
Cfr10I	RCCGGY	5 cut(s)	226, 274, 373, 379, 2224
Cfr13I	GGNCC	7 cut(s)	345, 346, 752, 1973, 2175, 2182, 2529
ClaI	ATCGAT	1 cut(s)	879
CseI	GACGC	4 cut(s)	37, 307, 1550, 2507
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	4 cut(s)	578, 1233, 2112, 2679
CspAI	ACCGGT	2 cut(s)	226, 2224
CspCI	CAANNNNNGTGG	2 cut(s)	2235, 2270
CviAII	CATG	8 cut(s)	1150, 2453, 2582, 2591, 2607, 2690, 2707, 2829
CviQI	GTAC	4 cut(s)	578, 1233, 2112, 2679
DpnI	GATC	6 cut(s)	12, 84, 783, 1230, 1824, 2827
DpnII	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
EaeI	YGGCCR	6 cut(s)	3, 255, 272, 545, 1146, 1941
EagI	CGGCCG	3 cut(s)	255, 272, 545
Eam1104I	CTCTTC	6 cut(s)	1326, 1727, 1733, 1782, 1885, 2301
EarI	CTCTTC	6 cut(s)	1326, 1727, 1733, 1782, 1885, 2301
EciI	GGCGGA	4 cut(s)	165, 315, 450, 471
EclXI	CGGCCG	3 cut(s)	255, 272, 545
Eco130I	CCWWGG	4 cut(s)	1149, 2468, 2525, 2606
Eco147I	AGGCCT	1 cut(s)	1375
Eco24I	GRGCYC	1 cut(s)	349
Eco31I	GGTCTC	4 cut(s)	214, 235, 418, 1272
Eco47I	GGWCC	4 cut(s)	752, 1973, 2182, 2529
Eco52I	CGGCCG	3 cut(s)	255, 272, 545
Eco57I	CTGAAG	6 cut(s)	725, 855, 1335, 1880, 1932, 2223
EcoO109I	RGGNCCY	3 cut(s)	345, 346, 2175
EcoRI	GAATTC	1 cut(s)	1240
EcoRII	CCWGG	5 cut(s)	484, 529, 604, 1222, 2178
EcoT14I	CCWWGG	4 cut(s)	1149, 2468, 2525, 2606
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	4 cut(s)	1149, 2468, 2525, 2606
FaeI	CATG	8 cut(s)	1153, 2456, 2585, 2594, 2610, 2693, 2710, 2832
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	5 cut(s)	305, 808, 2011, 2168, 2381
FatI	CATG	8 cut(s)	1149, 2452, 2581, 2590, 2606, 2689, 2706, 2828
FauI	CCCGC	3 cut(s)	100, 228, 2451
FauNDI	CATATG	2 cut(s)	393, 2551
FbaI	TGATCA	1 cut(s)	1822
FokI	GGATG	6 cut(s)	115, 1286, 1898, 2036, 2156, 2785
FriOI	GRGCYC	1 cut(s)	349
FspBI	CTAG	8 cut(s)	182, 651, 801, 929, 1341, 1698, 2403, 2676
GlaI	GCGC	4 cut(s)	261, 435, 1712, 2244
GsaI	CCCAGC	4 cut(s)	554, 599, 2053, 2072
HaeII	RGCGCY	1 cut(s)	2246
HgaI	GACGC	4 cut(s)	37, 307, 1550, 2507
HhaI	GCGC	4 cut(s)	262, 436, 1713, 2245
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	8 cut(s)	1153, 2456, 2585, 2594, 2610, 2693, 2710, 2832
Hin6I	GCGC	4 cut(s)	260, 434, 1711, 2243
HinP1I	GCGC	4 cut(s)	260, 434, 1711, 2243
HincII	GTYRAC	2 cut(s)	2363, 2431
HindII	GTYRAC	2 cut(s)	2363, 2431
HindIII	AAGCTT	3 cut(s)	1157, 1165, 2489
HphI	GGTGA	4 cut(s)	1019, 1238, 1380, 2003
Hpy166II	GTNNAC	4 cut(s)	715, 752, 2363, 2431
Hpy188I	TCNGA	6 cut(s)	408, 864, 1252, 1315, 1873, 2044
Hpy8I	GTNNAC	4 cut(s)	715, 752, 2363, 2431
Hpy99I	CGWCG	3 cut(s)	11, 31, 208
HpyCH4III	ACNGT	4 cut(s)	685, 712, 2428, 2435
HpyCH4IV	ACGT	3 cut(s)	1017, 2110, 2341
HpySE526I	ACGT	3 cut(s)	1017, 2110, 2341
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	8 cut(s)	1153, 2456, 2585, 2594, 2610, 2693, 2710, 2832
HspAI	GCGC	4 cut(s)	260, 434, 1711, 2243
Ksp22I	TGATCA	1 cut(s)	1822
Kzo9I	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
LmnI	GCTCC	8 cut(s)	344, 370, 463, 592, 889, 1225, 1459, 2696
Lsp1109I	GCAGC	4 cut(s)	2245, 2251, 2273, 2703
LweI	GCATC	7 cut(s)	387, 399, 1297, 1843, 2140, 2308, 2763
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	8 cut(s)	182, 651, 801, 929, 1341, 1698, 2403, 2676
MaeII	ACGT	3 cut(s)	1017, 2110, 2341
MaeIII	GTNAC	5 cut(s)	655, 1013, 1114, 1343, 2012
MalI	GATC	6 cut(s)	12, 84, 783, 1230, 1824, 2827
MbiI	CCGCTC	1 cut(s)	934
MboI	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
MflI	RGATCY	1 cut(s)	781
MhlI	GDGCHC	6 cut(s)	349, 367, 473, 589, 778, 2068
MlsI	TGGCCA	2 cut(s)	1148, 1943
MluNI	TGGCCA	2 cut(s)	1148, 1943
MlyI	GAGTC	3 cut(s)	790, 1993, 2368
MmeI	TCCRAC	2 cut(s)	686, 746
Mox20I	TGGCCA	2 cut(s)	1148, 1943
Mph1103I	ATGCAT	1 cut(s)	402
MroXI	GAANNNNTTC	1 cut(s)	840
MscI	TGGCCA	2 cut(s)	1148, 1943
MseI	TTAA	7 cut(s)	146, 899, 1184, 1668, 1781, 1947, 2790
MslI	CAYNNNNRTG	1 cut(s)	1989
Msp20I	TGGCCA	2 cut(s)	1148, 1943
MspA1I	CMGCKG	5 cut(s)	550, 644, 1609, 2264, 2716
MspR9I	CCNGG	9 cut(s)	315, 330, 343, 360, 486, 531, 606, 1224, 2180
Mva1269I	GAATGC	1 cut(s)	1723
MvaI	CCWGG	5 cut(s)	486, 531, 606, 1224, 2180
MvnI	CGCG	2 cut(s)	260, 434
NciI	CCSGG	4 cut(s)	315, 330, 343, 360
NcoI	CCATGG	2 cut(s)	1149, 2606
NdeI	CATATG	2 cut(s)	393, 2551
NdeII	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
NlaIII	CATG	8 cut(s)	1153, 2456, 2585, 2594, 2610, 2693, 2710, 2832
NmuCI	GTSAC	2 cut(s)	1114, 1343
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	3 cut(s)	2585, 2693, 2710
NspV	TTCGAA	1 cut(s)	1055
PaeI	GCATGC	2 cut(s)	2585, 2710
PagI	TCATGA	2 cut(s)	2590, 2828
PceI	AGGCCT	1 cut(s)	1375
PciI	ACATGT	1 cut(s)	2689
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	1723
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	9 cut(s)	40, 61, 827, 1052, 1694, 1916, 1928, 2027, 2521
PflMI	CCANNNNNTGG	1 cut(s)	1882
PinAI	ACCGGT	2 cut(s)	226, 2224
PleI	GAGTC	3 cut(s)	790, 1993, 2367
PpsI	GAGTC	3 cut(s)	790, 1993, 2367
PscI	ACATGT	1 cut(s)	2689
PshBI	ATTAAT	1 cut(s)	1668
Psp1406I	AACGTT	1 cut(s)	1017
Psp6I	CCWGG	5 cut(s)	484, 529, 604, 1222, 2178
PspFI	CCCAGC	4 cut(s)	550, 595, 2049, 2068
PspGI	CCWGG	5 cut(s)	484, 529, 604, 1222, 2178
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	7 cut(s)	345, 346, 752, 1973, 2175, 2182, 2529
PsrI	GAACNNNNNNTAC	2 cut(s)	2694, 2726
PstI	CTGCAG	3 cut(s)	1033, 2263, 2269
PstNI	CAGNNNCTG	2 cut(s)	892, 1846
PsuI	RGATCY	1 cut(s)	781
PvuII	CAGCTG	3 cut(s)	644, 2264, 2716
RsaI	GTAC	4 cut(s)	579, 1234, 2113, 2680
RsaNI	GTAC	4 cut(s)	578, 1233, 2112, 2679
RseI	CAYNNNNRTG	1 cut(s)	1989
SaqAI	TTAA	7 cut(s)	146, 899, 1184, 1668, 1781, 1947, 2790
Sau3AI	GATC	6 cut(s)	10, 82, 781, 1228, 1822, 2825
Sau96I	GGNCC	7 cut(s)	345, 346, 752, 1973, 2175, 2182, 2529
ScaI	AGTACT	1 cut(s)	2680
SchI	GAGTC	3 cut(s)	790, 1993, 2368
ScrFI	CCNGG	9 cut(s)	315, 330, 343, 360, 486, 531, 606, 1224, 2180
SduI	GDGCHC	6 cut(s)	349, 367, 473, 589, 778, 2068
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	7 cut(s)	387, 399, 1297, 1843, 2140, 2308, 2763
SfcI	CTRYAG	6 cut(s)	1029, 1838, 2210, 2259, 2265, 2711
SfuI	TTCGAA	1 cut(s)	1055
SinI	GGWCC	4 cut(s)	752, 1973, 2182, 2529
SmiMI	CAYNNNNRTG	1 cut(s)	1989
SmlI	CTYRAG	4 cut(s)	777, 981, 2682, 2759
SmoI	CTYRAG	4 cut(s)	777, 981, 2682, 2759
SpeI	ACTAGT	1 cut(s)	1340
SphI	GCATGC	2 cut(s)	2585, 2710
SseBI	AGGCCT	1 cut(s)	1375
SspMI	CTAG	8 cut(s)	182, 651, 801, 929, 1341, 1698, 2403, 2676
StuI	AGGCCT	1 cut(s)	1375
StyD4I	CCNGG	9 cut(s)	313, 328, 341, 358, 484, 529, 604, 1222, 2178
StyI	CCWWGG	4 cut(s)	1149, 2468, 2525, 2606
TaaI	ACNGT	4 cut(s)	685, 712, 2428, 2435
TaiI	ACGT	3 cut(s)	1020, 2113, 2344
TaqI	TCGA	6 cut(s)	526, 879, 1055, 1931, 2220, 2357
TaqII	GACCGA	3 cut(s)	196, 1133, 2460
TatI	WGTACW	2 cut(s)	577, 2678
TauI	GCSGC	8 cut(s)	196, 199, 202, 260, 388, 466, 550, 1612
TfiI	GAWTC	9 cut(s)	40, 61, 827, 1052, 1694, 1916, 1928, 2027, 2521
Tru1I	TTAA	7 cut(s)	146, 899, 1184, 1668, 1781, 1947, 2790
Tru9I	TTAA	7 cut(s)	146, 899, 1184, 1668, 1781, 1947, 2790
TscAI	CASTG	3 cut(s)	1863, 2023, 2661
TseFI	GTSAC	2 cut(s)	1114, 1343
TseI	GCWGC	4 cut(s)	2258, 2261, 2264, 2716
Tsp45I	GTSAC	2 cut(s)	1114, 1343
TspGWI	ACGGA	3 cut(s)	1516, 1660, 1666
TspRI	CASTG	3 cut(s)	1863, 2023, 2661
Van91I	CCANNNNNTGG	1 cut(s)	1882
VpaK11BI	GGWCC	4 cut(s)	752, 1973, 2182, 2529
VspI	ATTAAT	1 cut(s)	1668
XapI	RAATTY	6 cut(s)	869, 958, 1039, 1240, 2251, 2270
XbaI	TCTAGA	2 cut(s)	928, 1697
XceI	RCATGY	3 cut(s)	2585, 2693, 2710
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1883, 1991
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	8 cut(s)	182, 651, 801, 929, 1341, 1698, 2403, 2676
ZrmI	AGTACT	1 cut(s)	2680
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.