Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011390.1

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Reverse (-)

3036 .. 7829

Gene Structure 4794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011390.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

atggccgacgatcctcctactccggcgacgcaagacccgagtccccaacccgataacccgaatccccaatccaaacaacccgatccccctcccgcttctacaccaccaccaccgcaaccgcaaccatcatccaccccaatccaattaaaccccaatcccaatccaaacaatccgcctctagtttctctgccgcctccgccgccgcagcagccgtcggtctcttacgccccgcaaccggtctccaccgccttcgccgttcctccggccgcgccatctttccggccggttcctcagttctctccattaccgaattatcaaactcccggcgtccccccgccgggtgtcagctccggggctccgatggttcccggtgctccggtgccggtgccggtgccgcaacatatgatgcattatcagatgcaacagccgatgagaccctacgcgccaatgccgaatggctactcagctccgccgcagggcaccattcctccgcctggacttattcgttatccctctccatatcctacaatgcttcgacctggttttccctcacggccgctgggaggaattgctttgcttccatctgtacagcgcgctcctatgctgggtattcctggggttcgccccgttatgcctcctgttgttaggccagctgttcctagtgttactccagctgagaaaccacaaacaaccgtctatgttggcaagatagccccgacagtaaacaatgattttatgttatatctccttcagttatgtggacctgtcaagagttggaagcgtgctcaagatcccacagatgggactcctagaggctttggattttgtgattttgaatctgctgaaggggttcttcgtgcattacgccttctgagtaaattcaacatcgatgggcaggagctggtgttaaatgtaaatcaagcaacaagagagtatctagagcggtttgttgaaaagaaaactgaaaattcaaagaagctgaaagacactcaagctgagggagatgagaaagagggtgagagtaacgttgataagactgcagttccaaattctgttgtggattcgaaggcggaggatagtaatacagggaacaaagaaagcaacactacgaactttgggattgtgaccgatgaagacaaggaagctgacagggtggccatggagaagcttacaagcttgataggggagagattaaaaacaaatcctctgcctccaccgcctccacttgctcctggtgatcgtactgggaattcaatctcagagcttccagctaaggcaagggatggagacctcgatgtggatataacaagaaatgatgcttctgaagaaaaaaatgatgaagagacaactagtgacaacaaagctgaaagtgagcaggataggcctgaaacaagctcacctgagaggagtagaaagcctgataaaagtagagaaagagacagagagcgagatgtgaaacaggaaaaggagcgtgagattgaaagatatgaaagagaaacagagcgagaacggataaggaaggagagagagcagaggaggagaattgaggacgcagaacgcaagtttgaagaatgtctcaaagattgggagtatagggaaagggagaaacagaaacagcggcaatatgaaaaggagagggagaaagaacgggaacggaaacggaagaaagatataattaatgaagaagatgatgaggaagaagattctagaaaaaggtggcgcaggaatgtgtgggaggagaagaggaagaggagacagagggagaaggaagatgacttggctgacagattaagagaagaggaagaaattgctgaggccaacaggagggctgatcaggaaaagcagctacagcaactgagagatgcactgaaggcttcatctgaccatttagtggatggaagagaaacggcagatttggctgaagaatcctttgtggaatcgaaagatatggccattaaacaggacaatgagactagttctggtcctgagaaccatataggtgatggggctctacaaaatggtaacactggggatgaatcagccaatacatcagaaccccagcagagtgggagtgccccagccaaaaagttgggttttggtttagttggctctgggaaacgtacttctgttccgtctgttttcaacgaggaggatgatgatgcacacaaggacaaaaagatgaggcctctggtccctattgactattcaactgaagaactacaggctgtcgaaccggttgcttctgggcaagcgccaccaaatttggctgcagctgcagaatttgcaaagcgaatatcaaatgttggttctaaagaagagaagcacgatgcagagaaggagagaaatagacgtgccaatgataggtcgagtcaacgggacagggataggaatgatgatgacactaaccgcactagagatgagaacaaggagaagactgttgaccgtgatacagaccgggaacatgggcgggataaaccgaggacaacagataataagaagcttttggacgcaaaacaactgattgatatgattccaaggaccaaagaggagttattctcatatgaaataaattgggctatttatgaaaagcatgcacttcatgagagaatgaaaccatggatttcaaagaagattacagagtttcttggagaggaagaaaccacactggtagattatattgtatctagtactcaagaacatgtgggagcagaacgcatgctacagctgcttcaatccattttagacgaggaagctgaaatgtttgttctcaagatgtggaggatgctcatctttgaaattaagaaggtagagacaggcttacattcaaaaacaagatcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

946

Amino Acids

107.0

Weight (kDa)

5.29

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	379, 385, 391, 479
AccB7I	CCANNNNNTGG	1 cut(s)	1891
AccBSI	CCGCTC	1 cut(s)	943
AccII	CGCG	3 cut(s)	269, 443, 594
AclI	AACGTT	1 cut(s)	1026
AclWI	GGATC	3 cut(s)	5, 77, 785
AcoI	YGGCCR	6 cut(s)	3, 264, 281, 554, 1155, 1950
AcsI	RAATTY	6 cut(s)	878, 967, 1048, 1249, 2260, 2279
AcuI	CTGAAG	6 cut(s)	734, 864, 1344, 1889, 1941, 2232
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	4 cut(s)	588, 1243, 2122, 2689
AflIII	ACRYGT	1 cut(s)	2698
AgeI	ACCGGT	2 cut(s)	235, 2233
AhlI	ACTAGT	2 cut(s)	1349, 1973
AjiI	CACGTC	1 cut(s)	2351
AjnI	CCWGG	4 cut(s)	493, 538, 613, 1231
Alw21I	GWGCWC	2 cut(s)	376, 787
AlwI	GGATC	3 cut(s)	5, 77, 785
AlwNI	CAGNNNCTG	2 cut(s)	901, 1855
Ama87I	CYCGRG	1 cut(s)	37
ApeKI	GCWGC	7 cut(s)	205, 208, 1843, 2267, 2270, 2273, 2725
ApoI	RAATTY	6 cut(s)	878, 967, 1048, 1249, 2260, 2279
AseI	ATTAAT	1 cut(s)	1677
AsiGI	ACCGGT	2 cut(s)	235, 2233
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	6 cut(s)	271, 445, 594, 596, 1722, 2254
AspS9I	GGNCC	4 cut(s)	761, 1982, 2191, 2538
AsuC2I	CCSGG	5 cut(s)	324, 339, 352, 369, 2456
AsuHPI	GGTGA	4 cut(s)	1028, 1247, 1389, 2012
AsuII	TTCGAA	1 cut(s)	1064
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	4 cut(s)	761, 1982, 2191, 2538
BaeGI	GKGCMC	2 cut(s)	482, 2077
BalI	TGGCCA	2 cut(s)	1157, 1952
BanI	GGYRCC	4 cut(s)	379, 385, 391, 479
BanII	GRGCYC	2 cut(s)	358, 2011
BbsI	GAAGAC	2 cut(s)	1140, 2438
Bbv12I	GWGCWC	2 cut(s)	376, 787
BbvCI	CCTCAGC	2 cut(s)	996, 1812
BbvI	GCAGC	7 cut(s)	217, 220, 1855, 2254, 2260, 2282, 2712
BccI	CCATC	9 cut(s)	133, 280, 355, 589, 794, 884, 1277, 1889, 1997
BceAI	ACGGC	4 cut(s)	196, 239, 569, 1923
BcgI	CGANNNNNNTGC	2 cut(s)	2219, 2253
BciT130I	CCWGG	4 cut(s)	495, 540, 615, 1233
BclI	TGATCA	1 cut(s)	1831
BcnI	CCSGG	5 cut(s)	324, 339, 352, 369, 2456
BcuI	ACTAGT	2 cut(s)	1349, 1973
BfaI	CTAG	9 cut(s)	179, 660, 810, 938, 1350, 1707, 1974, 2412, 2685
BfmI	CTRYAG	6 cut(s)	1038, 1847, 2219, 2268, 2274, 2720
BfoI	RGCGCY	1 cut(s)	2255
BmcAI	AGTACT	1 cut(s)	2689
Bme1390I	CCNGG	9 cut(s)	324, 339, 352, 369, 495, 540, 615, 1233, 2456
Bme18I	GGWCC	4 cut(s)	761, 1982, 2191, 2538
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	2351
BmgT120I	GGNCC	4 cut(s)	761, 1982, 2191, 2538
BmiI	GGNNCC	8 cut(s)	288, 357, 366, 381, 387, 393, 481, 2193
BmrFI	CCNGG	9 cut(s)	324, 339, 352, 369, 495, 540, 615, 1233, 2456
BmrI	ACTGGG	2 cut(s)	1254, 2037
BmsI	GCATC	7 cut(s)	396, 408, 1306, 1852, 2149, 2317, 2772
BmuI	ACTGGG	2 cut(s)	1254, 2037
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	1140, 2438
BplI	GAGNNNNNCTC	2 cut(s)	2540, 2572
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	3 cut(s)	996, 1272, 1812
Bpu14I	TTCGAA	1 cut(s)	1064
BpuEI	CTTGAG	4 cut(s)	771, 975, 2676, 2753
BpuMI	CCSGG	5 cut(s)	324, 339, 352, 369, 2456
Bsa29I	ATCGAT	1 cut(s)	888
BsaBI	GATNNNNATC	1 cut(s)	2786
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	4 cut(s)	223, 244, 427, 1281
BsaJI	CCNNGG	6 cut(s)	351, 614, 1158, 2477, 2534, 2615
BsaWI	WCCGGW	3 cut(s)	235, 376, 2233
BsaXI	ACNNNNNCTCC	4 cut(s)	472, 502, 890, 920
Bse118I	RCCGGY	5 cut(s)	235, 283, 382, 388, 2233
Bse1I	ACTGG	3 cut(s)	1249, 2032, 2670
Bse8I	GATNNNNATC	1 cut(s)	2786
BseBI	CCWGG	4 cut(s)	495, 540, 615, 1233
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	6 cut(s)	351, 614, 1158, 2477, 2534, 2615
BseGI	GGATG	6 cut(s)	128, 1288, 1900, 2038, 2158, 2787
BseJI	GATNNNNATC	1 cut(s)	2786
BseNI	ACTGG	3 cut(s)	1249, 2032, 2670
BsePI	GCGCGC	1 cut(s)	592
BseRI	GAGGAG	7 cut(s)	1420, 1549, 1552, 1751, 1765, 2162, 2561
BseSI	GKGCMC	2 cut(s)	482, 2077
BseX3I	CGGCCG	3 cut(s)	264, 281, 554
BseXI	GCAGC	7 cut(s)	217, 220, 1855, 2254, 2260, 2282, 2712
BseYI	CCCAGC	4 cut(s)	559, 604, 2058, 2077
Bsh1236I	CGCG	3 cut(s)	269, 443, 594
Bsh1285I	CGRYCG	3 cut(s)	267, 284, 557
BshNI	GGYRCC	4 cut(s)	379, 385, 391, 479
BshTI	ACCGGT	2 cut(s)	235, 2233
BshVI	ATCGAT	1 cut(s)	888
BsiEI	CGRYCG	3 cut(s)	267, 284, 557
BsiHKAI	GWGCWC	2 cut(s)	376, 787
BsiHKCI	CYCGRG	1 cut(s)	37
BslFI	GGGAC	5 cut(s)	27, 314, 817, 2177, 2390
BsmFI	GGGAC	5 cut(s)	27, 314, 817, 2177, 2390
Bso31I	GGTCTC	4 cut(s)	223, 244, 427, 1281
BsoBI	CYCGRG	1 cut(s)	37
Bsp119I	TTCGAA	1 cut(s)	1064
Bsp1286I	GDGCHC	6 cut(s)	358, 376, 482, 787, 2011, 2077
Bsp1407I	TGTACA	1 cut(s)	586
Bsp143I	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
Bsp19I	CCATGG	2 cut(s)	1158, 2615
BspDI	ATCGAT	1 cut(s)	888
BspFNI	CGCG	3 cut(s)	269, 443, 594
BspHI	TCATGA	2 cut(s)	2599, 2837
BspLI	GGNNCC	8 cut(s)	288, 357, 366, 381, 387, 393, 481, 2193
BspMAI	CTGCAG	3 cut(s)	1042, 2272, 2278
BspPI	GGATC	3 cut(s)	5, 77, 785
BspT104I	TTCGAA	1 cut(s)	1064
BspT107I	GGYRCC	4 cut(s)	379, 385, 391, 479
BspTNI	GGTCTC	4 cut(s)	223, 244, 427, 1281
BsrBI	CCGCTC	1 cut(s)	943
BsrFI	RCCGGY	5 cut(s)	235, 283, 382, 388, 2233
BsrGI	TGTACA	1 cut(s)	586
BsrI	ACTGG	3 cut(s)	1249, 2032, 2670
BssAI	RCCGGY	5 cut(s)	235, 283, 382, 388, 2233
BssECI	CCNNGG	6 cut(s)	351, 614, 1158, 2477, 2534, 2615
BssHII	GCGCGC	1 cut(s)	592
BssMI	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	3 cut(s)	1158, 2534, 2615
Bst2UI	CCWGG	4 cut(s)	495, 540, 615, 1233
Bst4CI	ACNGT	4 cut(s)	694, 721, 2437, 2444
Bst6I	CTCTTC	6 cut(s)	1335, 1736, 1742, 1791, 1894, 2310
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	2282
BstAUI	TGTACA	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	1064
BstC8I	GCNNGC	6 cut(s)	594, 651, 783, 2250, 2592, 2717
BstDSI	CCRYGG	2 cut(s)	1158, 2615
BstF5I	GGATG	6 cut(s)	128, 1288, 1900, 2038, 2158, 2787
BstFNI	CGCG	3 cut(s)	269, 443, 594
BstH2I	RGCGCY	1 cut(s)	2255
BstHHI	GCGC	6 cut(s)	271, 445, 594, 596, 1722, 2254
BstKTI	GATC	6 cut(s)	13, 85, 793, 1240, 1834, 2837
BstMBI	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
BstMCI	CGRYCG	3 cut(s)	267, 284, 557
BstNI	CCWGG	4 cut(s)	495, 540, 615, 1233
BstNSI	RCATGY	3 cut(s)	2594, 2702, 2719
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	9 cut(s)	322, 337, 350, 367, 493, 538, 613, 1231, 2454
BstSFI	CTRYAG	6 cut(s)	1038, 1847, 2219, 2268, 2274, 2720
BstSLI	GKGCMC	2 cut(s)	482, 2077
BstUI	CGCG	3 cut(s)	269, 443, 594
BstV1I	GCAGC	7 cut(s)	217, 220, 1855, 2254, 2260, 2282, 2712
BstV2I	GAAGAC	2 cut(s)	1140, 2438
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	2 cut(s)	2066, 2089
BstYI	RGATCY	1 cut(s)	790
BstZI	CGGCCG	3 cut(s)	264, 281, 554
Bsu15I	ATCGAT	1 cut(s)	888
BsuTUI	ATCGAT	1 cut(s)	888
BtgI	CCRYGG	2 cut(s)	1158, 2615
BtrI	CACGTC	1 cut(s)	2351
BtsCI	GGATG	6 cut(s)	128, 1288, 1900, 2038, 2158, 2787
BtsIMutI	CAGTG	3 cut(s)	1865, 2025, 2663
Cac8I	GCNNGC	6 cut(s)	594, 651, 783, 2250, 2592, 2717
CaiI	CAGNNNCTG	2 cut(s)	901, 1855
CciI	TCATGA	2 cut(s)	2599, 2837
CfoI	GCGC	6 cut(s)	271, 445, 594, 596, 1722, 2254
Cfr10I	RCCGGY	5 cut(s)	235, 283, 382, 388, 2233
Cfr13I	GGNCC	4 cut(s)	761, 1982, 2191, 2538
ClaI	ATCGAT	1 cut(s)	888
CseI	GACGC	4 cut(s)	37, 316, 1559, 2516
CsiI	ACCWGGT	1 cut(s)	538
Csp6I	GTAC	4 cut(s)	587, 1242, 2121, 2688
CspAI	ACCGGT	2 cut(s)	235, 2233
CspCI	CAANNNNNGTGG	2 cut(s)	2244, 2279
CviAII	CATG	8 cut(s)	1159, 2462, 2591, 2600, 2616, 2699, 2716, 2838
CviQI	GTAC	4 cut(s)	587, 1242, 2121, 2688
DpnI	GATC	6 cut(s)	12, 84, 792, 1239, 1833, 2836
DpnII	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
EaeI	YGGCCR	6 cut(s)	3, 264, 281, 554, 1155, 1950
EagI	CGGCCG	3 cut(s)	264, 281, 554
Eam1104I	CTCTTC	6 cut(s)	1335, 1736, 1742, 1791, 1894, 2310
EarI	CTCTTC	6 cut(s)	1335, 1736, 1742, 1791, 1894, 2310
EciI	GGCGGA	5 cut(s)	162, 186, 459, 480, 1085
EclXI	CGGCCG	3 cut(s)	264, 281, 554
Eco130I	CCWWGG	3 cut(s)	1158, 2534, 2615
Eco147I	AGGCCT	2 cut(s)	1384, 2185
Eco24I	GRGCYC	2 cut(s)	358, 2011
Eco31I	GGTCTC	4 cut(s)	223, 244, 427, 1281
Eco47I	GGWCC	4 cut(s)	761, 1982, 2191, 2538
Eco52I	CGGCCG	3 cut(s)	264, 281, 554
Eco57I	CTGAAG	6 cut(s)	734, 864, 1344, 1889, 1941, 2232
Eco88I	CYCGRG	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	1249
EcoRII	CCWGG	4 cut(s)	493, 538, 613, 1231
EcoT14I	CCWWGG	3 cut(s)	1158, 2534, 2615
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	2 cut(s)	358, 2011
ErhI	CCWWGG	3 cut(s)	1158, 2534, 2615
FaeI	CATG	8 cut(s)	1162, 2465, 2594, 2603, 2619, 2702, 2719, 2841
FalI	AAGNNNNNCTT	2 cut(s)	837, 869
FaqI	GGGAC	5 cut(s)	27, 314, 817, 2177, 2390
FatI	CATG	8 cut(s)	1158, 2461, 2590, 2599, 2615, 2698, 2715, 2837
FauI	CCCGC	4 cut(s)	100, 237, 342, 2460
FauNDI	CATATG	2 cut(s)	402, 2560
FbaI	TGATCA	1 cut(s)	1831
FokI	GGATG	6 cut(s)	115, 1295, 1907, 2045, 2165, 2794
FriOI	GRGCYC	2 cut(s)	358, 2011
FspBI	CTAG	9 cut(s)	179, 660, 810, 938, 1350, 1707, 1974, 2412, 2685
GlaI	GCGC	6 cut(s)	270, 444, 593, 595, 1721, 2253
GsaI	CCCAGC	4 cut(s)	563, 608, 2062, 2081
GsuI	CTGGAG	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	2255
HgaI	GACGC	4 cut(s)	37, 316, 1559, 2516
HhaI	GCGC	6 cut(s)	271, 445, 594, 596, 1722, 2254
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	8 cut(s)	1162, 2465, 2594, 2603, 2619, 2702, 2719, 2841
Hin6I	GCGC	6 cut(s)	269, 443, 592, 594, 1720, 2252
HinP1I	GCGC	6 cut(s)	269, 443, 592, 594, 1720, 2252
HincII	GTYRAC	2 cut(s)	2372, 2440
HindII	GTYRAC	2 cut(s)	2372, 2440
HindIII	AAGCTT	3 cut(s)	1166, 1174, 2498
HphI	GGTGA	4 cut(s)	1028, 1247, 1389, 2012
Hpy166II	GTNNAC	4 cut(s)	724, 761, 2372, 2440
Hpy188I	TCNGA	7 cut(s)	360, 417, 873, 1261, 1324, 1882, 2053
Hpy8I	GTNNAC	4 cut(s)	724, 761, 2372, 2440
Hpy99I	CGWCG	3 cut(s)	11, 31, 217
HpyCH4III	ACNGT	4 cut(s)	694, 721, 2437, 2444
HpyCH4IV	ACGT	3 cut(s)	1026, 2119, 2350
HpySE526I	ACGT	3 cut(s)	1026, 2119, 2350
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	8 cut(s)	1162, 2465, 2594, 2603, 2619, 2702, 2719, 2841
HspAI	GCGC	6 cut(s)	269, 443, 592, 594, 1720, 2252
Ksp22I	TGATCA	1 cut(s)	1831
Kzo9I	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
LmnI	GCTCC	9 cut(s)	353, 361, 379, 472, 601, 898, 1234, 1468, 2705
Lsp1109I	GCAGC	7 cut(s)	217, 220, 1855, 2254, 2260, 2282, 2712
LweI	GCATC	7 cut(s)	396, 408, 1306, 1852, 2149, 2317, 2772
MabI	ACCWGGT	1 cut(s)	538
MaeI	CTAG	9 cut(s)	179, 660, 810, 938, 1350, 1707, 1974, 2412, 2685
MaeII	ACGT	3 cut(s)	1026, 2119, 2350
MaeIII	GTNAC	5 cut(s)	664, 1022, 1123, 1352, 2021
MalI	GATC	6 cut(s)	12, 84, 792, 1239, 1833, 2836
MbiI	CCGCTC	1 cut(s)	943
MboI	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	6 cut(s)	358, 376, 482, 787, 2011, 2077
MlsI	TGGCCA	2 cut(s)	1157, 1952
MluNI	TGGCCA	2 cut(s)	1157, 1952
MlyI	GAGTC	3 cut(s)	49, 799, 2377
MmeI	TCCRAC	1 cut(s)	755
Mox20I	TGGCCA	2 cut(s)	1157, 1952
Mph1103I	ATGCAT	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	849
MscI	TGGCCA	2 cut(s)	1157, 1952
MseI	TTAA	7 cut(s)	146, 908, 1193, 1677, 1790, 1956, 2799
MslI	CAYNNNNRTG	1 cut(s)	1998
Msp20I	TGGCCA	2 cut(s)	1157, 1952
MspA1I	CMGCKG	6 cut(s)	559, 653, 674, 1618, 2273, 2725
MspR9I	CCNGG	9 cut(s)	324, 339, 352, 369, 495, 540, 615, 1233, 2456
MvaI	CCWGG	4 cut(s)	495, 540, 615, 1233
MvnI	CGCG	3 cut(s)	269, 443, 594
NciI	CCSGG	5 cut(s)	324, 339, 352, 369, 2456
NcoI	CCATGG	2 cut(s)	1158, 2615
NdeI	CATATG	2 cut(s)	402, 2560
NdeII	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
NlaIII	CATG	8 cut(s)	1162, 2465, 2594, 2603, 2619, 2702, 2719, 2841
NlaIV	GGNNCC	8 cut(s)	288, 357, 366, 381, 387, 393, 481, 2193
NmuCI	GTSAC	2 cut(s)	1123, 1352
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	3 cut(s)	2594, 2702, 2719
NspV	TTCGAA	1 cut(s)	1064
PaeI	GCATGC	2 cut(s)	2594, 2719
PagI	TCATGA	2 cut(s)	2599, 2837
PauI	GCGCGC	1 cut(s)	592
PceI	AGGCCT	2 cut(s)	1384, 2185
PciI	ACATGT	1 cut(s)	2698
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	8 cut(s)	61, 836, 1061, 1703, 1925, 1937, 2036, 2530
PflMI	CCANNNNNTGG	1 cut(s)	1891
PinAI	ACCGGT	2 cut(s)	235, 2233
PleI	GAGTC	3 cut(s)	48, 799, 2376
PpsI	GAGTC	3 cut(s)	48, 799, 2376
PscI	ACATGT	1 cut(s)	2698
PshAI	GACNNNNGTC	1 cut(s)	39
PshBI	ATTAAT	1 cut(s)	1677
Psp1406I	AACGTT	1 cut(s)	1026
Psp6I	CCWGG	4 cut(s)	493, 538, 613, 1231
PspFI	CCCAGC	4 cut(s)	559, 604, 2058, 2077
PspGI	CCWGG	4 cut(s)	493, 538, 613, 1231
PspN4I	GGNNCC	8 cut(s)	288, 357, 366, 381, 387, 393, 481, 2193
PspPI	GGNCC	4 cut(s)	761, 1982, 2191, 2538
PsrI	GAACNNNNNNTAC	2 cut(s)	2703, 2735
PstI	CTGCAG	3 cut(s)	1042, 2272, 2278
PstNI	CAGNNNCTG	2 cut(s)	901, 1855
PsuI	RGATCY	1 cut(s)	790
PteI	GCGCGC	1 cut(s)	592
PvuII	CAGCTG	4 cut(s)	653, 674, 2273, 2725
RsaI	GTAC	4 cut(s)	588, 1243, 2122, 2689
RsaNI	GTAC	4 cut(s)	587, 1242, 2121, 2688
RseI	CAYNNNNRTG	1 cut(s)	1998
SaqAI	TTAA	7 cut(s)	146, 908, 1193, 1677, 1790, 1956, 2799
Sau3AI	GATC	6 cut(s)	10, 82, 790, 1237, 1831, 2834
Sau96I	GGNCC	4 cut(s)	761, 1982, 2191, 2538
ScaI	AGTACT	1 cut(s)	2689
SchI	GAGTC	3 cut(s)	49, 799, 2377
ScrFI	CCNGG	9 cut(s)	324, 339, 352, 369, 495, 540, 615, 1233, 2456
SduI	GDGCHC	6 cut(s)	358, 376, 482, 787, 2011, 2077
SexAI	ACCWGGT	1 cut(s)	538
SfaNI	GCATC	7 cut(s)	396, 408, 1306, 1852, 2149, 2317, 2772
SfcI	CTRYAG	6 cut(s)	1038, 1847, 2219, 2268, 2274, 2720
SfuI	TTCGAA	1 cut(s)	1064
SinI	GGWCC	4 cut(s)	761, 1982, 2191, 2538
SmiMI	CAYNNNNRTG	1 cut(s)	1998
SmlI	CTYRAG	4 cut(s)	786, 990, 2691, 2768
SmoI	CTYRAG	4 cut(s)	786, 990, 2691, 2768
SpeI	ACTAGT	2 cut(s)	1349, 1973
SphI	GCATGC	2 cut(s)	2594, 2719
SseBI	AGGCCT	2 cut(s)	1384, 2185
SspMI	CTAG	9 cut(s)	179, 660, 810, 938, 1350, 1707, 1974, 2412, 2685
StuI	AGGCCT	2 cut(s)	1384, 2185
StyD4I	CCNGG	9 cut(s)	322, 337, 350, 367, 493, 538, 613, 1231, 2454
StyI	CCWWGG	3 cut(s)	1158, 2534, 2615
TaaI	ACNGT	4 cut(s)	694, 721, 2437, 2444
TaiI	ACGT	3 cut(s)	1029, 2122, 2353
TaqI	TCGA	7 cut(s)	535, 888, 1064, 1293, 1940, 2229, 2366
TaqII	GACCGA	2 cut(s)	205, 1142
TatI	WGTACW	2 cut(s)	586, 2687
TauI	GCSGC	8 cut(s)	193, 202, 205, 269, 397, 475, 559, 1621
TfiI	GAWTC	8 cut(s)	61, 836, 1061, 1703, 1925, 1937, 2036, 2530
Tru1I	TTAA	7 cut(s)	146, 908, 1193, 1677, 1790, 1956, 2799
Tru9I	TTAA	7 cut(s)	146, 908, 1193, 1677, 1790, 1956, 2799
TscAI	CASTG	3 cut(s)	1872, 2032, 2670
TseFI	GTSAC	2 cut(s)	1123, 1352
TseI	GCWGC	7 cut(s)	205, 208, 1843, 2267, 2270, 2273, 2725
Tsp45I	GTSAC	2 cut(s)	1123, 1352
TspGWI	ACGGA	4 cut(s)	1525, 1669, 1675, 2121
TspRI	CASTG	3 cut(s)	1872, 2032, 2670
Van91I	CCANNNNNTGG	1 cut(s)	1891
VpaK11BI	GGWCC	4 cut(s)	761, 1982, 2191, 2538
VspI	ATTAAT	1 cut(s)	1677
XapI	RAATTY	6 cut(s)	878, 967, 1048, 1249, 2260, 2279
XbaI	TCTAGA	2 cut(s)	937, 1706
XceI	RCATGY	3 cut(s)	2594, 2702, 2719
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1892, 2000
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	9 cut(s)	179, 660, 810, 938, 1350, 1707, 1974, 2412, 2685
ZrmI	AGTACT	1 cut(s)	2689
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.