Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Reverse (-)

6348982 .. 6352754

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1091700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2307 bp

ATGATTCGGACCCCGTTTCCTCCACGCCCACTGGGAGCAACTGGTTTGCTTCAGCGTGCCCCTGTTCCTGGGATTCCTGGAGTTCGCCCAATTATCCCTCCTGTTAGGCCAATTCTTCCTATTGTCACCCCAGCGGAGAAACCACAAACCACTGTTTATGTTGGGAAGATAGCACCAACTGTGGACAATGAATTTATGAAATATCTCCTCCAGTTGTGTGGACCTGTCAAGAGTTGGAAACGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGGTTCTGCGAATTTGAATCTGCTGAAGGGGTTCTTCGGGCATTACGTCTTCTCACCAAATTGAGCATTGATGGGCAGGACCTTGTGCTAAATGTTAATCAAGCAACAAGAGACTATCTGGAGAGGGTTGTCCAAAAGAAGACTGAAAACTCAAAGAAGCTCAAAGAAGCTGAAGCAGCTGAGAAAGGTGATGGAAGTGCACCAGACGGTGAGAAGAATGTACCTTCAAATCCTTCTGTACAAGACCCAAAGGAGGAAGATAGTAATTCAAGTAACAAAGAAAATGACACTGCCAATTTTGGAATTGTGACTGATGAAGACAAGGAAGCTGACCAGGAGGCTATGGAGAAGCTTACAAGTTTGATAGAGGAGAGAATAAAAAACAAACCTCTCCCTCCACCACCTACACCAGCTCCTGGTGATGCTACTAGGAATTCAAACTCAACGCTGCCAGCTAAATCAAGGGATGGAGACTCTGATGTTGATACAATGAGAAATGATGCTTGTGAAGAAAAAATTGATGAAGAGATAACTGGTGACAACAAAACAAGTGACCAGGAGAGGCCTGAAACAAGCTCACCTGATAGGAGCAGAAGGCAAGATAGGAGCAGAGACAGGGGGCGAGATATGAAACGCGAAAAGGAGCGTGAGATTGAAAGATACGAAAGAGAAACAGAGCGAGAACGGGTGCGGAAGGAGAAGGAGCAAAGGAGAAAAATCGAGGATGCTGAGCATCAGTATGAAAAATGTCTGAAAGATTGGGAGTATAGGGAAAGGGAGAAAGAGAAACAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAGAGAACGCAAACGGAAGAAAGAGGTAATTTATGAAGAAGATGATGAGGATGAAGATTCCAGGAAAAAATGGAGGAGAAGTGCATTGGAGGAGAAGAGAAAGAGGAGACTACGGGAGAAGGAAGAGGACATAGCTGACAGGCAGAAAGAAGAAGAAGAAATTGCCGAGGCCAGAAAGAGGGCTGAAGAGGAAAAGCAGCTGGAGCAAGAGAGAGATGCATTAAGGGTTTCATCTGGCCATGTACCAAATGGAAGTGACACAGTTGCTTTGGCTGAAGAATTCGGTGTGGAACTGAAAGATAAGGCAATTGAACAGGACGTTGAGGGTTATTCTGGTCCTGAGAATCGTATAGGTGATGGAGCTTTACAGAATGGTAACAGTGGTGATAAGTCAACCATGACATCTGCTTCTGCATCAGAACCACATCTGAGTGGCAGTGCCCCAGCAAAGAAGTTGGGTTTTGGCTTAATGGGTTCTGGAAAACGTACTGCTGTTCCTTCTGTTTTTAAAGAGGAGGATGATGATGCACACAAGGACAAAAAAATGAGGCCCCTGGTTCCAATTGATTATTCAACTGAAGAACTACAGGCTGTCCAACAAACTGTTTTTGGGACAGCTCCATCAAATTTGGCTGCAGCTGCAGAATTCGCAAAGCGAATATCAAATGCTAGTTCTAAAGAAGAGAAGCCAGATGCGGAGAAAGAAAGAAGTAGACGTTCTGATGATAGGTCAAGCCACCGGGATAGGGACCGGCATGGTGATGACTCTAATCGCACTAGAAATGAGCACAAGGAGAAGACTATTGACCGTGATACGGACCGAGAACATGGGATGAGTAAACCAAGGGCAACGGATAACAAGAAGCTTTTGGATGCAAAACAACTGATCGATATGATTCCGAAGACAAAAGAGGAATTATTCTCATACGAAATAAATTGGGCTATTTATGAACAGCATGCACTACATGAACGCATGAGACCATGGATTTCGAAGAAGATTACCGAGTTTCTGGGAGAGGAAGAGACTACGCTGGTAGATTACATTGTATCTAGTACTCAGGAACATGTCGGAGCAGAACGCATGCTCCAGCTGCTTCAATCCATTTTAGACGAAGAAGCTGAAATGTTTGTGCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTCGAGACAGGTCTGGCTTCAAGAACAAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

769

Amino Acids

88.02

Weight (kDa)

5.46

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 120	6.9e-09	RNA recognition motif
PWI	PF01480	691 - 754	1.3e-13	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	1813
AccII	CGCG	1 cut(s)	915
AciI	CCGC	3 cut(s)	134, 970, 1796
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	1336
AcsI	RAATTY	6 cut(s)	191, 290, 712, 1379, 1726, 1745
AcuI	CTGAAG	6 cut(s)	35, 324, 471, 1305, 1395, 1698
AfaI	GTAC	5 cut(s)	501, 519, 1344, 1588, 2155
AfiI	CCNNNNNNNGG	8 cut(s)	68, 260, 261, 532, 695, 1278, 1846, 1915
AflIII	ACRYGT	1 cut(s)	2164
AjnI	CCWGG	7 cut(s)	67, 76, 612, 694, 834, 1160, 1653
AjuI	GAANNNNNNNTTGG	2 cut(s)	1654, 1686
AloI	GAACNNNNNNTCC	2 cut(s)	2169, 2201
Alw21I	GWGCWC	4 cut(s)	247, 481, 1890, 2235
Alw26I	GTCTC	7 cut(s)	384, 744, 885, 1201, 2071, 2117, 2270
Alw44I	GTGCAC	1 cut(s)	477
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	5 cut(s)	107, 842, 1269, 1336, 1649
ApaLI	GTGCAC	1 cut(s)	477
ApeKI	GCWGC	7 cut(s)	455, 727, 1297, 1733, 1736, 1739, 2191
ApoI	RAATTY	6 cut(s)	191, 290, 712, 1379, 1726, 1745
Asp700I	GAANNNNTTC	1 cut(s)	309
AspS9I	GGNCC	7 cut(s)	9, 221, 358, 1436, 1650, 1849, 1918
AsuC2I	CCSGG	1 cut(s)	1841
AsuII	TTCGAA	1 cut(s)	2090
AvaII	GGWCC	6 cut(s)	9, 221, 358, 1436, 1849, 1918
BaeGI	GKGCMC	3 cut(s)	61, 481, 1543
BalI	TGGCCA	1 cut(s)	1338
BbsI	GAAGAC	5 cut(s)	320, 425, 603, 1904, 2009
Bbv12I	GWGCWC	4 cut(s)	247, 481, 1890, 2235
BbvI	GCAGC	7 cut(s)	467, 714, 1309, 1720, 1726, 1748, 2178
BccI	CCATC	6 cut(s)	254, 344, 464, 740, 1451, 1729
BciT130I	CCWGG	7 cut(s)	69, 78, 614, 696, 836, 1162, 1655
BcnI	CCSGG	1 cut(s)	1841
BcoDI	GTCTC	7 cut(s)	384, 744, 885, 1201, 2071, 2117, 2270
BfaI	CTAG	5 cut(s)	270, 708, 1770, 1878, 2151
BfmI	CTRYAG	3 cut(s)	1685, 1734, 1740
BisI	GCNGC	7 cut(s)	456, 728, 1298, 1734, 1737, 1740, 2192
BlpI	GCTNAGC	1 cut(s)	1008
BlsI	GCNGC	7 cut(s)	457, 729, 1299, 1735, 1738, 1741, 2193
BmcAI	AGTACT	1 cut(s)	2155
Bme1390I	CCNGG	8 cut(s)	69, 78, 614, 696, 836, 1162, 1655, 1841
Bme18I	GGWCC	6 cut(s)	9, 221, 358, 1436, 1849, 1918
BmgT120I	GGNCC	7 cut(s)	9, 221, 358, 1436, 1650, 1849, 1918
BmiI	GGNNCC	4 cut(s)	11, 1652, 1659, 1850
BmrFI	CCNGG	8 cut(s)	69, 78, 614, 696, 836, 1162, 1655, 1841
BmrI	ACTGGG	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	41
BpiI	GAAGAC	5 cut(s)	320, 425, 603, 1904, 2009
BpmI	CTGGAG	5 cut(s)	99, 194, 419, 1322, 2171
Bpu1102I	GCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	2090
BpuEI	CTTGAG	2 cut(s)	231, 2219
BpuMI	CCSGG	1 cut(s)	1841
Bsa29I	ATCGAT	1 cut(s)	1989
BsaBI	GATNNNNATC	1 cut(s)	2252
BsaI	GGTCTC	1 cut(s)	2071
BsaJI	CCNNGG	5 cut(s)	68, 1266, 1653, 1943, 2081
BsaXI	ACNNNNNCTCC	6 cut(s)	676, 706, 1165, 1195, 2169, 2199
Bsc4I	CCNNNNNNNGG	8 cut(s)	68, 260, 261, 532, 695, 1278, 1846, 1915
Bse118I	RCCGGY	1 cut(s)	1851
Bse1I	ACTGG	4 cut(s)	36, 46, 211, 817
Bse8I	GATNNNNATC	1 cut(s)	2252
BseBI	CCWGG	7 cut(s)	69, 78, 614, 696, 836, 1162, 1655
BseCI	ATCGAT	1 cut(s)	1989
BseDI	CCNNGG	5 cut(s)	68, 1266, 1653, 1943, 2081
BseGI	GGATG	7 cut(s)	751, 1009, 1156, 1624, 1938, 1978, 2253
BseJI	GATNNNNATC	1 cut(s)	2252
BseLI	CCNNNNNNNGG	8 cut(s)	68, 260, 261, 532, 695, 1278, 1846, 1915
BseMII	CTCAG	5 cut(s)	450, 999, 1431, 1520, 2171
BseNI	ACTGG	4 cut(s)	36, 46, 211, 817
BseRI	GAGGAG	6 cut(s)	197, 662, 1189, 1205, 1219, 1628
BseSI	GKGCMC	3 cut(s)	61, 481, 1543
BseXI	GCAGC	7 cut(s)	467, 714, 1309, 1720, 1726, 1748, 2178
BseYI	CCCAGC	2 cut(s)	130, 1543
Bsh1236I	CGCG	1 cut(s)	915
BshFI	GGCC	5 cut(s)	109, 844, 1271, 1338, 1651
BshVI	ATCGAT	1 cut(s)	1989
BsiHKAI	GWGCWC	4 cut(s)	247, 481, 1890, 2235
BsiSI	CCGG	2 cut(s)	1840, 1852
BslFI	GGGAC	3 cut(s)	277, 1726, 1862
BslI	CCNNNNNNNGG	8 cut(s)	68, 260, 261, 532, 695, 1278, 1846, 1915
BsmAI	GTCTC	7 cut(s)	384, 744, 885, 1201, 2071, 2117, 2270
BsmFI	GGGAC	3 cut(s)	277, 1726, 1862
BsnI	GGCC	5 cut(s)	109, 844, 1271, 1338, 1651
Bso31I	GGTCTC	1 cut(s)	2071
Bsp119I	TTCGAA	1 cut(s)	2090
Bsp1286I	GDGCHC	6 cut(s)	61, 247, 481, 1543, 1890, 2235
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	250, 1986
Bsp1720I	GCTNAGC	1 cut(s)	1008
Bsp19I	CCATGG	1 cut(s)	2081
BspACI	CCGC	3 cut(s)	134, 970, 1796
BspANI	GGCC	5 cut(s)	109, 844, 1271, 1338, 1651
BspCNI	CTCAG	5 cut(s)	451, 1000, 1432, 1521, 2170
BspDI	ATCGAT	1 cut(s)	1989
BspFNI	CGCG	1 cut(s)	915
BspLI	GGNNCC	4 cut(s)	11, 1652, 1659, 1850
BspMAI	CTGCAG	2 cut(s)	1738, 1744
BspPI	GGATC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	2090
BspTNI	GGTCTC	1 cut(s)	2071
BsrFI	RCCGGY	1 cut(s)	1851
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	4 cut(s)	36, 46, 211, 817
BssAI	RCCGGY	1 cut(s)	1851
BssECI	CCNNGG	5 cut(s)	68, 1266, 1653, 1943, 2081
BssMI	GATC	2 cut(s)	250, 1986
BssT1I	CCWWGG	2 cut(s)	1943, 2081
Bst2UI	CCWGG	7 cut(s)	69, 78, 614, 696, 836, 1162, 1655
Bst4CI	ACNGT	7 cut(s)	154, 181, 488, 1363, 1481, 1705, 1910
Bst6I	CTCTTC	6 cut(s)	798, 1190, 1218, 1281, 1776, 2115
BstAUI	TGTACA	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	2090
BstC8I	GCNNGC	4 cut(s)	57, 732, 2058, 2183
BstDEI	CTNAG	5 cut(s)	459, 1008, 1440, 1529, 2157
BstDSI	CCRYGG	1 cut(s)	2081
BstF5I	GGATG	7 cut(s)	751, 1009, 1156, 1624, 1938, 1978, 2253
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	2 cut(s)	253, 1989
BstMAI	GTCTC	7 cut(s)	384, 744, 885, 1201, 2071, 2117, 2270
BstMBI	GATC	2 cut(s)	250, 1986
BstMWI	GCNNNNNNNGC	5 cut(s)	455, 1303, 1739, 1748, 2191
BstNI	CCWGG	7 cut(s)	69, 78, 614, 696, 836, 1162, 1655
BstNSI	RCATGY	3 cut(s)	2060, 2168, 2185
BstSCI	CCNGG	8 cut(s)	67, 76, 612, 694, 834, 1160, 1653, 1839
BstSFI	CTRYAG	3 cut(s)	1685, 1734, 1740
BstSLI	GKGCMC	3 cut(s)	61, 481, 1543
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	7 cut(s)	467, 714, 1309, 1720, 1726, 1748, 2178
BstV2I	GAAGAC	5 cut(s)	320, 425, 603, 1904, 2009
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	250
Bsu15I	ATCGAT	1 cut(s)	1989
BsuRI	GGCC	5 cut(s)	109, 844, 1271, 1338, 1651
BsuTUI	ATCGAT	1 cut(s)	1989
BtgI	CCRYGG	1 cut(s)	2081
BtsCI	GGATG	7 cut(s)	751, 1009, 1156, 1624, 1938, 1978, 2253
BtsI	GCAGTG	2 cut(s)	567, 1543
BtsIMutI	CAGTG	5 cut(s)	29, 150, 567, 1486, 1543
Cac8I	GCNNGC	4 cut(s)	57, 732, 2058, 2183
CaiI	CAGNNNCTG	1 cut(s)	695
Cfr10I	RCCGGY	1 cut(s)	1851
Cfr13I	GGNCC	7 cut(s)	9, 221, 358, 1436, 1650, 1849, 1918
ClaI	ATCGAT	1 cut(s)	1989
CpoI	CGGWCCG	1 cut(s)	1918
Csp6I	GTAC	5 cut(s)	500, 518, 1343, 1587, 2154
CspI	CGGWCCG	1 cut(s)	1918
CviQI	GTAC	5 cut(s)	500, 518, 1343, 1587, 2154
DdeI	CTNAG	5 cut(s)	459, 1008, 1440, 1529, 2157
DpnI	GATC	2 cut(s)	252, 1988
DpnII	GATC	2 cut(s)	250, 1986
DraI	TTTAAA	1 cut(s)	1609
EaeI	YGGCCR	1 cut(s)	1336
Eam1104I	CTCTTC	6 cut(s)	798, 1190, 1218, 1281, 1776, 2115
EarI	CTCTTC	6 cut(s)	798, 1190, 1218, 1281, 1776, 2115
Eco130I	CCWWGG	2 cut(s)	1943, 2081
Eco147I	AGGCCT	1 cut(s)	844
Eco31I	GGTCTC	1 cut(s)	2071
Eco47I	GGWCC	6 cut(s)	9, 221, 358, 1436, 1849, 1918
Eco57I	CTGAAG	6 cut(s)	35, 324, 471, 1305, 1395, 1698
EcoO109I	RGGNCCY	2 cut(s)	358, 1650
EcoRI	GAATTC	3 cut(s)	712, 1379, 1745
EcoRII	CCWGG	7 cut(s)	67, 76, 612, 694, 834, 1160, 1653
EcoT14I	CCWWGG	2 cut(s)	1943, 2081
EcoT22I	ATGCAT	1 cut(s)	1321
ErhI	CCWWGG	2 cut(s)	1943, 2081
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	3 cut(s)	277, 1726, 1862
FblI	GTMKAC	1 cut(s)	1813
Fnu4HI	GCNGC	7 cut(s)	456, 728, 1298, 1734, 1737, 1740, 2192
FokI	GGATG	7 cut(s)	758, 1016, 1163, 1631, 1945, 1985, 2260
Fsp4HI	GCNGC	7 cut(s)	456, 728, 1298, 1734, 1737, 1740, 2192
FspBI	CTAG	5 cut(s)	270, 708, 1770, 1878, 2151
GluI	GCNGC	7 cut(s)	456, 728, 1298, 1734, 1737, 1740, 2192
GsaI	CCCAGC	2 cut(s)	134, 1547
GsuI	CTGGAG	5 cut(s)	99, 194, 419, 1322, 2171
HaeIII	GGCC	5 cut(s)	109, 844, 1271, 1338, 1651
HapII	CCGG	2 cut(s)	1840, 1852
HincII	GTYRAC	1 cut(s)	1494
HindII	GTYRAC	1 cut(s)	1494
HindIII	AAGCTT	2 cut(s)	629, 1964
HinfI	GANTC	9 cut(s)	4, 73, 265, 296, 752, 1157, 1444, 1865, 1996
HpaII	CCGG	2 cut(s)	1840, 1852
Hpy166II	GTNNAC	6 cut(s)	184, 221, 479, 1494, 1814, 1940
Hpy188I	TCNGA	8 cut(s)	9, 757, 1032, 1519, 1530, 1822, 2001, 2171
Hpy188III	TCNNGA	9 cut(s)	229, 248, 398, 1439, 1578, 2159, 2236, 2275, 2292
Hpy8I	GTNNAC	6 cut(s)	184, 221, 479, 1494, 1814, 1940
HpyCH4III	ACNGT	7 cut(s)	154, 181, 488, 1363, 1481, 1705, 1910
HpyCH4IV	ACGT	5 cut(s)	241, 325, 1419, 1585, 1816
HpyCH4V	TGCA	9 cut(s)	479, 1184, 1319, 1514, 1628, 1736, 1742, 1976, 2060
HpyF10VI	GCNNNNNNNGC	5 cut(s)	455, 1303, 1739, 1748, 2191
HpyF3I	CTNAG	5 cut(s)	459, 1008, 1440, 1529, 2157
HpySE526I	ACGT	5 cut(s)	241, 325, 1419, 1585, 1816
Kzo9I	GATC	2 cut(s)	250, 1986
Lsp1109I	GCAGC	7 cut(s)	467, 714, 1309, 1720, 1726, 1748, 2178
MaeI	CTAG	5 cut(s)	270, 708, 1770, 1878, 2151
MaeII	ACGT	5 cut(s)	241, 325, 1419, 1585, 1816
MaeIII	GTNAC	7 cut(s)	124, 551, 586, 815, 830, 1355, 1475
MalI	GATC	2 cut(s)	252, 1988
MboI	GATC	2 cut(s)	250, 1986
MfeI	CAATTG	2 cut(s)	1407, 1662
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	6 cut(s)	61, 247, 481, 1543, 1890, 2235
MlsI	TGGCCA	1 cut(s)	1338
MluNI	TGGCCA	1 cut(s)	1338
MlyI	GAGTC	3 cut(s)	259, 746, 1859
MmeI	TCCRAC	3 cut(s)	215, 1720, 2149
Mox20I	TGGCCA	1 cut(s)	1338
Mph1103I	ATGCAT	1 cut(s)	1321
MroXI	GAANNNNTTC	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	1338
MseI	TTAA	5 cut(s)	375, 1322, 1568, 1608, 2265
MslI	CAYNNNNRTG	3 cut(s)	1017, 1530, 1860
Msp20I	TGGCCA	1 cut(s)	1338
MspA1I	CMGCKG	5 cut(s)	134, 458, 1300, 1739, 2191
MspI	CCGG	2 cut(s)	1840, 1852
MspR9I	CCNGG	8 cut(s)	69, 78, 614, 696, 836, 1162, 1655, 1841
MunI	CAATTG	2 cut(s)	1407, 1662
MvaI	CCWGG	7 cut(s)	69, 78, 614, 696, 836, 1162, 1655
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	5 cut(s)	455, 1303, 1739, 1748, 2191
NciI	CCSGG	1 cut(s)	1841
NcoI	CCATGG	1 cut(s)	2081
NdeII	GATC	2 cut(s)	250, 1986
NlaIV	GGNNCC	4 cut(s)	11, 1652, 1659, 1850
NmeAIII	GCCGAG	1 cut(s)	1291
NmuCI	GTSAC	5 cut(s)	124, 586, 815, 830, 1355
NsiI	ATGCAT	1 cut(s)	1321
NspI	RCATGY	3 cut(s)	2060, 2168, 2185
NspV	TTCGAA	1 cut(s)	2090
PaeI	GCATGC	2 cut(s)	2060, 2185
PceI	AGGCCT	1 cut(s)	844
PciI	ACATGT	1 cut(s)	2164
PcsI	WCGNNNNNNNCGW	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	6 cut(s)	4, 73, 296, 1157, 1444, 1996
PflMI	CCANNNNNTGG	1 cut(s)	695
PfoI	TCCNGGA	2 cut(s)	76, 1160
PkrI	GCNGC	7 cut(s)	457, 729, 1299, 1735, 1738, 1741, 2193
PleI	GAGTC	3 cut(s)	259, 746, 1859
PpsI	GAGTC	3 cut(s)	259, 746, 1859
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	2164
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	7 cut(s)	67, 76, 612, 694, 834, 1160, 1653
PspFI	CCCAGC	2 cut(s)	130, 1543
PspGI	CCWGG	7 cut(s)	67, 76, 612, 694, 834, 1160, 1653
PspN4I	GGNNCC	4 cut(s)	11, 1652, 1659, 1850
PspPI	GGNCC	7 cut(s)	9, 221, 358, 1436, 1650, 1849, 1918
PspPPI	RGGWCCY	1 cut(s)	358
PstI	CTGCAG	2 cut(s)	1738, 1744
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	4 cut(s)	458, 1300, 1739, 2191
RsaI	GTAC	5 cut(s)	501, 519, 1344, 1588, 2155
RsaNI	GTAC	5 cut(s)	500, 518, 1343, 1587, 2154
RseI	CAYNNNNRTG	3 cut(s)	1017, 1530, 1860
Rsr2I	CGGWCCG	1 cut(s)	1918
RsrII	CGGWCCG	1 cut(s)	1918
SaqAI	TTAA	5 cut(s)	375, 1322, 1568, 1608, 2265
SatI	GCNGC	7 cut(s)	456, 728, 1298, 1734, 1737, 1740, 2192
Sau3AI	GATC	2 cut(s)	250, 1986
Sau96I	GGNCC	7 cut(s)	9, 221, 358, 1436, 1650, 1849, 1918
ScaI	AGTACT	1 cut(s)	2155
SchI	GAGTC	3 cut(s)	259, 746, 1859
ScrFI	CCNGG	8 cut(s)	69, 78, 614, 696, 836, 1162, 1655, 1841
SduI	GDGCHC	6 cut(s)	61, 247, 481, 1543, 1890, 2235
SfcI	CTRYAG	3 cut(s)	1685, 1734, 1740
SfuI	TTCGAA	1 cut(s)	2090
SinI	GGWCC	6 cut(s)	9, 221, 358, 1436, 1849, 1918
SmiMI	CAYNNNNRTG	3 cut(s)	1017, 1530, 1860
SmlI	CTYRAG	2 cut(s)	246, 2234
SmoI	CTYRAG	2 cut(s)	246, 2234
SphI	GCATGC	2 cut(s)	2060, 2185
SseBI	AGGCCT	1 cut(s)	844
SsiI	CCGC	3 cut(s)	134, 970, 1796
SspMI	CTAG	5 cut(s)	270, 708, 1770, 1878, 2151
StuI	AGGCCT	1 cut(s)	844
StyD4I	CCNGG	8 cut(s)	67, 76, 612, 694, 834, 1160, 1653, 1839
StyI	CCWWGG	2 cut(s)	1943, 2081
TaaI	ACNGT	7 cut(s)	154, 181, 488, 1363, 1481, 1705, 1910
TaiI	ACGT	5 cut(s)	244, 328, 1422, 1588, 1819
TaqI	TCGA	4 cut(s)	999, 1989, 2090, 2274
TaqII	GACCGA	1 cut(s)	1935
TatI	WGTACW	2 cut(s)	517, 2153
TfiI	GAWTC	6 cut(s)	4, 73, 296, 1157, 1444, 1996
Tru1I	TTAA	5 cut(s)	375, 1322, 1568, 1608, 2265
Tru9I	TTAA	5 cut(s)	375, 1322, 1568, 1608, 2265
TscAI	CASTG	5 cut(s)	36, 157, 574, 1486, 1543
TseFI	GTSAC	5 cut(s)	124, 586, 815, 830, 1355
TseI	GCWGC	7 cut(s)	455, 727, 1297, 1733, 1736, 1739, 2191
Tsp45I	GTSAC	5 cut(s)	124, 586, 815, 830, 1355
TspGWI	ACGGA	3 cut(s)	1129, 1931, 1967
TspRI	CASTG	5 cut(s)	36, 157, 574, 1486, 1543
Van91I	CCANNNNNTGG	1 cut(s)	695
VneI	GTGCAC	1 cut(s)	477
VpaK11BI	GGWCC	6 cut(s)	9, 221, 358, 1436, 1849, 1918
XapI	RAATTY	6 cut(s)	191, 290, 712, 1379, 1726, 1745
XceI	RCATGY	3 cut(s)	2060, 2168, 2185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1346
XmiI	GTMKAC	1 cut(s)	1813
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	5 cut(s)	270, 708, 1770, 1878, 2151
ZrmI	AGTACT	1 cut(s)	2155
Zsp2I	ATGCAT	1 cut(s)	1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.