Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Forward (+)

56605491 .. 56613151

Gene Structure 7661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG420200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGCTTCGACCTGGTTTTCCCTCACGGCCGCTGGGAGGAATTGCTTTGCTTCCATCTGTACAGCGCGCTCCTATGCTGGGTATTCCTGGGGTTCGCCCCGTTATGCCTCCTGTTGTTAGGCCAGCTGTTCCTATTGTTACTCCAGCTGAGAAACCACAAACAACCGTCTATGTTGGCAAGATAGCCCCGACAGTAAACAATGATTTTATGTTATATCTCCTTCAGTTATGTGGACCTGTCAAGAGTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGATTTTGTGATTTTGAATCTGCTGAAGGGGTTCTTCGTGCATTACGCCTTCTGAGTAAATTCAACATCGATGGGCAGGAGCTGGTGTTAAATGTAAATCAAGCAACAAGAGAGTATCTAGAGCGGTTTGTTGAAAAGAAAACTGAAAATTCAAAGAAGCTGAAAGACACTCAAGCTGAGGGAGATGAGAAAGAGGGTGAGAGTAACGTTGATAAGACTGCAGTTCCAAATTCTGTTGTGGATTCGAAGGCGGAGGATAGTAATACAGGGAACAAAGAAAGCAACACTACGAACTTTGGGATTGTGACCGATGAAGACAAGGAAGCTGACAGGGTGGCCATGGAGAAGCTTACAAGCTTTATAGAGGAGAGATTAAAAACAAACCCTCTGCCTCCACCGCCTCCACTTGCTCCTGGTGATCGTACTGGGAATCCAATCTCAGAGATTCCAGCTAAGGCAAGGGATGGAGACCTTGATGTGGATATAACAAGAAATGATGCTTCTGAAGAAAAAAATGATGAAGAGACAACTAGTGACAACAAAGCTGAAAGTGAGCTGGATAGGCCTGAAACAAGCTCACCTGAGAGGAGTAGAAAGCCTGATAAAAGTAGAGAAAGAGACAGAGAGCGAGATGTGAAACAGGAAAAGGAGCGTGAGATTGAAAGATATGAAAGAGAAACAGAGCGAGAACGGATAAGGAAGGAGAGAGAGCAGAGGAGGAGAATTGAGGACGCAGAACGCAAGTTTGAAGAATGTCTCAAAGATTGGGAGTATAGGGAAAGGGAGAAACAGAAACAGCGGCAATATGAAAAGGAGAGGGAGAAAGAACGGGAACGGAAACGGAAGAAAGATATAATTAATGAAGAAGATGATGAGGAAGAAGATTCTAGAAAAAGGTGGCGCAGGAATGTGTGGGAGGAGAAGAGGAAGAGGAGACAGAGGGAGAAGGAAGATGACTTGGCTGACAGATTAAGAGAAGAGGAAGAAATTGCTGAGGCCAACAGGAGGGCTGATCAGGAAAAGCAGCTACAGCAACTGAGAGATGCACTGAAGGCTTCATCTGACCATTTAGTGGATGGAAGAGAAACGGCAGATTTGGCTGAAGAATCCTTTGTGGAATCGAAAGATATGGCCATTAAACAGGACAATGAGACTAGTTCTGGTCCTGAGAACCATATAGGTGATGGGACTCTACAAAATGGTAACACTGGGGATGAATCAGCCAATACATCAGAACTCCAGCAGAGTGGGAGTGCCCCAGCCAAAAAGTTGGGTTTTGGTTTAGTTGGCTCTGGGAAACGTACTTCTGTTCCGTCTGTTTTCAACGAGGAGGATGATGATGCACACAAGGACAAAAAGATGAGGCCTCTGGTCCCTATTGACTATTCAACTGAAGAACTACAGGCTGTCGAACCGGTTGCTTCTGGGCAAGCGCCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGGTTCTAAAGAAGAGAAGCACGATGCAGAGAAGGAGAGAAATAGACGTGCCAATGATAGGTCGAGTCAACGGGACAGGGATAGGAATGATGATGACACTAACCGCACTAGAGATGAGAACAAGGAGAAGACTGTTGACCGTGATACAGACCGGGAACATGGGCGGGATAAACCGAGGACAACAGATAATAAGAAGCTTTTGGACGCAAAACAACTGATTGATATGATTCCAAGGACCAAAGAGGAGTTATTCTCATATGAAATAAATTGGGCTATTTATGAAAAGCATGCACTTCATGAGAGAATGAAACCATGGATTTCAAAGAAGATTACAGAGTTTCTTGGAGAGGAAGAAACCACACTGGTAGATTATATTGTATCTAGTACTCAAGAACATGTGGGAGCAGAACGCATGCTACAGCTGCTTCAATCCATTTTAGACGAGGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTAGAGACAGGCTTACCTTCAAAAACAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

770

Amino Acids

88.69

Weight (kDa)

5.22

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 125	1.9e-08	RNA recognition motif
PWI	PF01480	693 - 756	8.5e-14	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1363
AccBSI	CCGCTC	1 cut(s)	415
AccII	CGCG	1 cut(s)	66
AciI	CCGC	7 cut(s)	29, 415, 542, 689, 1090, 1879, 1939
AclI	AACGTT	1 cut(s)	498
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	3 cut(s)	26, 627, 1422
AcsI	RAATTY	5 cut(s)	350, 439, 520, 1732, 1751
AcuI	CTGAAG	6 cut(s)	206, 336, 816, 1361, 1413, 1704
AfaI	GTAC	4 cut(s)	60, 715, 1594, 2161
AfiI	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
AflIII	ACRYGT	1 cut(s)	2170
AgeI	ACCGGT	1 cut(s)	1705
AhlI	ACTAGT	2 cut(s)	821, 1445
AjiI	CACGTC	1 cut(s)	1823
AjnI	CCWGG	3 cut(s)	10, 85, 703
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	2 cut(s)	373, 1327
AoxI	GGCC	7 cut(s)	26, 119, 627, 854, 1287, 1422, 1655
ApeKI	GCWGC	5 cut(s)	1315, 1739, 1742, 1745, 2197
ApoI	RAATTY	5 cut(s)	350, 439, 520, 1732, 1751
AseI	ATTAAT	1 cut(s)	1149
AsiGI	ACCGGT	1 cut(s)	1705
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	4 cut(s)	66, 68, 1194, 1726
AspS9I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
AsuC2I	CCSGG	1 cut(s)	1928
AsuHPI	GGTGA	4 cut(s)	500, 719, 861, 1484
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	4 cut(s)	233, 1454, 1663, 2010
BaeGI	GKGCMC	1 cut(s)	1549
BalI	TGGCCA	2 cut(s)	629, 1424
BbsI	GAAGAC	2 cut(s)	612, 1910
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	2 cut(s)	468, 1284
BbvI	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
BccI	CCATC	6 cut(s)	61, 266, 356, 749, 1361, 1469
BceAI	ACGGC	2 cut(s)	41, 1395
BcgI	CGANNNNNNTGC	2 cut(s)	1691, 1725
BciT130I	CCWGG	3 cut(s)	12, 87, 705
BclI	TGATCA	1 cut(s)	1303
BcnI	CCSGG	1 cut(s)	1928
BcoDI	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
BcuI	ACTAGT	2 cut(s)	821, 1445
BfaI	CTAG	7 cut(s)	282, 410, 822, 1179, 1446, 1884, 2157
BfmI	CTRYAG	6 cut(s)	510, 1319, 1691, 1740, 1746, 2192
BfoI	RGCGCY	1 cut(s)	1727
BisI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
BlsI	GCNGC	7 cut(s)	30, 1092, 1317, 1741, 1744, 1747, 2199
BmcAI	AGTACT	1 cut(s)	2161
Bme1390I	CCNGG	4 cut(s)	12, 87, 705, 1928
Bme18I	GGWCC	4 cut(s)	233, 1454, 1663, 2010
BmgBI	CACGTC	1 cut(s)	1823
BmgT120I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
BmiI	GGNNCC	1 cut(s)	1665
BmrFI	CCNGG	4 cut(s)	12, 87, 705, 1928
BmrI	ACTGGG	2 cut(s)	726, 1509
BmsI	GCATC	5 cut(s)	778, 1324, 1621, 1789, 2244
BmuI	ACTGGG	2 cut(s)	726, 1509
BpiI	GAAGAC	2 cut(s)	612, 1910
BplI	GAGNNNNNCTC	2 cut(s)	2012, 2044
BpmI	CTGGAG	2 cut(s)	126, 1514
Bpu10I	CCTNAGC	3 cut(s)	468, 744, 1284
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	4 cut(s)	243, 447, 2148, 2225
BpuMI	CCSGG	1 cut(s)	1928
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	2258
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	5 cut(s)	86, 630, 1949, 2006, 2087
BsaWI	WCCGGW	1 cut(s)	1705
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
Bse118I	RCCGGY	1 cut(s)	1705
Bse1I	ACTGG	3 cut(s)	721, 1504, 2142
Bse8I	GATNNNNATC	1 cut(s)	2258
BseBI	CCWGG	3 cut(s)	12, 87, 705
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	5 cut(s)	86, 630, 1949, 2006, 2087
BseGI	GGATG	5 cut(s)	760, 1372, 1510, 1630, 2259
BseJI	GATNNNNATC	1 cut(s)	2258
BseLI	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
BseMII	CTCAG	8 cut(s)	138, 335, 459, 744, 864, 1275, 1319, 1449
BseNI	ACTGG	3 cut(s)	721, 1504, 2142
BsePI	GCGCGC	1 cut(s)	64
BseRI	GAGGAG	8 cut(s)	671, 892, 1021, 1024, 1223, 1237, 1634, 2033
BseSI	GKGCMC	1 cut(s)	1549
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
BseYI	CCCAGC	3 cut(s)	31, 76, 1549
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
BshTI	ACCGGT	1 cut(s)	1705
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	1706, 1927
BslFI	GGGAC	4 cut(s)	289, 1492, 1649, 1862
BslI	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
BsmAI	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
BsmFI	GGGAC	4 cut(s)	289, 1492, 1649, 1862
BsnI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
Bso31I	GGTCTC	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	259, 1549
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	262, 709, 1303, 2306
Bsp19I	CCATGG	2 cut(s)	630, 2087
BspACI	CCGC	7 cut(s)	29, 415, 542, 689, 1090, 1879, 1939
BspANI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
BspCNI	CTCAG	8 cut(s)	139, 336, 460, 743, 865, 1276, 1320, 1450
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	2071, 2309
BspLI	GGNNCC	1 cut(s)	1665
BspMAI	CTGCAG	3 cut(s)	514, 1744, 1750
BspPI	GGATC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	753
BsrBI	CCGCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	1705
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	721, 1504, 2142
BssAI	RCCGGY	1 cut(s)	1705
BssECI	CCNNGG	5 cut(s)	86, 630, 1949, 2006, 2087
BssHII	GCGCGC	1 cut(s)	64
BssMI	GATC	4 cut(s)	262, 709, 1303, 2306
BssT1I	CCWWGG	3 cut(s)	630, 2006, 2087
Bst2UI	CCWGG	3 cut(s)	12, 87, 705
Bst4CI	ACNGT	4 cut(s)	166, 193, 1909, 1916
Bst6I	CTCTTC	6 cut(s)	807, 1208, 1214, 1263, 1366, 1782
BstAPI	GCANNNNNTGC	1 cut(s)	1754
BstAUI	TGTACA	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	6 cut(s)	66, 123, 255, 1722, 2064, 2189
BstDEI	CTNAG	9 cut(s)	147, 344, 468, 730, 744, 873, 1284, 1328, 1458
BstDSI	CCRYGG	2 cut(s)	630, 2087
BstF5I	GGATG	5 cut(s)	760, 1372, 1510, 1630, 2259
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	1727
BstHHI	GCGC	4 cut(s)	66, 68, 1194, 1726
BstKTI	GATC	4 cut(s)	265, 712, 1306, 2309
BstMAI	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
BstMBI	GATC	4 cut(s)	262, 709, 1303, 2306
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	8 cut(s)	688, 853, 1321, 1343, 1388, 1745, 1754, 2197
BstNI	CCWGG	3 cut(s)	12, 87, 705
BstNSI	RCATGY	3 cut(s)	2066, 2174, 2191
BstSCI	CCNGG	4 cut(s)	10, 85, 703, 1926
BstSFI	CTRYAG	6 cut(s)	510, 1319, 1691, 1740, 1746, 2192
BstSLI	GKGCMC	1 cut(s)	1549
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
BstV2I	GAAGAC	2 cut(s)	612, 1910
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	2 cut(s)	1538, 1561
BstYI	RGATCY	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	2 cut(s)	630, 2087
BtrI	CACGTC	1 cut(s)	1823
BtsCI	GGATG	5 cut(s)	760, 1372, 1510, 1630, 2259
BtsIMutI	CAGTG	3 cut(s)	1337, 1497, 2135
Cac8I	GCNNGC	6 cut(s)	66, 123, 255, 1722, 2064, 2189
CaiI	CAGNNNCTG	2 cut(s)	373, 1327
CciI	TCATGA	2 cut(s)	2071, 2309
CfoI	GCGC	4 cut(s)	66, 68, 1194, 1726
Cfr10I	RCCGGY	1 cut(s)	1705
Cfr13I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	2 cut(s)	1031, 1988
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	59, 714, 1593, 2160
CspAI	ACCGGT	1 cut(s)	1705
CspCI	CAANNNNNGTGG	2 cut(s)	1716, 1751
CviAII	CATG	8 cut(s)	631, 1934, 2063, 2072, 2088, 2171, 2188, 2310
CviQI	GTAC	4 cut(s)	59, 714, 1593, 2160
DdeI	CTNAG	9 cut(s)	147, 344, 468, 730, 744, 873, 1284, 1328, 1458
DpnI	GATC	4 cut(s)	264, 711, 1305, 2308
DpnII	GATC	4 cut(s)	262, 709, 1303, 2306
EaeI	YGGCCR	3 cut(s)	26, 627, 1422
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	6 cut(s)	807, 1208, 1214, 1263, 1366, 1782
EarI	CTCTTC	6 cut(s)	807, 1208, 1214, 1263, 1366, 1782
EciI	GGCGGA	1 cut(s)	557
EclXI	CGGCCG	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	630, 2006, 2087
Eco147I	AGGCCT	2 cut(s)	856, 1657
Eco31I	GGTCTC	1 cut(s)	753
Eco47I	GGWCC	4 cut(s)	233, 1454, 1663, 2010
Eco52I	CGGCCG	1 cut(s)	26
Eco57I	CTGAAG	6 cut(s)	206, 336, 816, 1361, 1413, 1704
EcoRII	CCWGG	3 cut(s)	10, 85, 703
EcoT14I	CCWWGG	3 cut(s)	630, 2006, 2087
ErhI	CCWWGG	3 cut(s)	630, 2006, 2087
FaeI	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	4 cut(s)	289, 1492, 1649, 1862
FatI	CATG	8 cut(s)	630, 1933, 2062, 2071, 2087, 2170, 2187, 2309
FauI	CCCGC	1 cut(s)	1932
FauNDI	CATATG	1 cut(s)	2032
FbaI	TGATCA	1 cut(s)	1303
Fnu4HI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
FokI	GGATG	5 cut(s)	767, 1379, 1517, 1637, 2266
Fsp4HI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
FspBI	CTAG	7 cut(s)	282, 410, 822, 1179, 1446, 1884, 2157
GlaI	GCGC	4 cut(s)	65, 67, 1193, 1725
GluI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
GsaI	CCCAGC	3 cut(s)	35, 80, 1553
GsuI	CTGGAG	2 cut(s)	126, 1514
HaeII	RGCGCY	1 cut(s)	1727
HaeIII	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
HapII	CCGG	2 cut(s)	1706, 1927
HgaI	GACGC	2 cut(s)	1031, 1988
HhaI	GCGC	4 cut(s)	66, 68, 1194, 1726
Hin1II	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
Hin6I	GCGC	4 cut(s)	64, 66, 1192, 1724
HinP1I	GCGC	4 cut(s)	64, 66, 1192, 1724
HincII	GTYRAC	2 cut(s)	1844, 1912
HindII	GTYRAC	2 cut(s)	1844, 1912
HindIII	AAGCTT	3 cut(s)	638, 646, 1970
HpaII	CCGG	2 cut(s)	1706, 1927
HphI	GGTGA	4 cut(s)	500, 719, 861, 1484
Hpy166II	GTNNAC	4 cut(s)	196, 233, 1844, 1912
Hpy188I	TCNGA	5 cut(s)	345, 733, 796, 1354, 1525
Hpy8I	GTNNAC	4 cut(s)	196, 233, 1844, 1912
HpyCH4III	ACNGT	4 cut(s)	166, 193, 1909, 1916
HpyCH4IV	ACGT	3 cut(s)	498, 1591, 1822
HpyCH4V	TGCA	9 cut(s)	332, 512, 1337, 1634, 1742, 1748, 1757, 1802, 2066
HpyF10VI	GCNNNNNNNGC	8 cut(s)	688, 853, 1321, 1343, 1388, 1745, 1754, 2197
HpyF3I	CTNAG	9 cut(s)	147, 344, 468, 730, 744, 873, 1284, 1328, 1458
HpySE526I	ACGT	3 cut(s)	498, 1591, 1822
Hsp92II	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
HspAI	GCGC	4 cut(s)	64, 66, 1192, 1724
Ksp22I	TGATCA	1 cut(s)	1303
Kzo9I	GATC	4 cut(s)	262, 709, 1303, 2306
LmnI	GCTCC	5 cut(s)	73, 370, 706, 940, 2177
Lsp1109I	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
LweI	GCATC	5 cut(s)	778, 1324, 1621, 1789, 2244
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	7 cut(s)	282, 410, 822, 1179, 1446, 1884, 2157
MaeII	ACGT	3 cut(s)	498, 1591, 1822
MaeIII	GTNAC	5 cut(s)	136, 494, 595, 824, 1493
MalI	GATC	4 cut(s)	264, 711, 1305, 2308
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	4 cut(s)	262, 709, 1303, 2306
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	259, 1549
MlsI	TGGCCA	2 cut(s)	629, 1424
MluNI	TGGCCA	2 cut(s)	629, 1424
MlyI	GAGTC	3 cut(s)	271, 1474, 1849
MmeI	TCCRAC	1 cut(s)	227
Mox20I	TGGCCA	2 cut(s)	629, 1424
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	2 cut(s)	629, 1424
MseI	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
MslI	CAYNNNNRTG	1 cut(s)	1470
Msp20I	TGGCCA	2 cut(s)	629, 1424
MspA1I	CMGCKG	6 cut(s)	31, 125, 146, 1090, 1745, 2197
MspI	CCGG	2 cut(s)	1706, 1927
MspR9I	CCNGG	4 cut(s)	12, 87, 705, 1928
MvaI	CCWGG	3 cut(s)	12, 87, 705
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	8 cut(s)	688, 853, 1321, 1343, 1388, 1745, 1754, 2197
NciI	CCSGG	1 cut(s)	1928
NcoI	CCATGG	2 cut(s)	630, 2087
NdeI	CATATG	1 cut(s)	2032
NdeII	GATC	4 cut(s)	262, 709, 1303, 2306
NlaIII	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
NlaIV	GGNNCC	1 cut(s)	1665
NmuCI	GTSAC	2 cut(s)	595, 824
NspI	RCATGY	3 cut(s)	2066, 2174, 2191
NspV	TTCGAA	1 cut(s)	536
PaeI	GCATGC	2 cut(s)	2066, 2191
PagI	TCATGA	2 cut(s)	2071, 2309
PauI	GCGCGC	1 cut(s)	64
PceI	AGGCCT	2 cut(s)	856, 1657
PciI	ACATGT	1 cut(s)	2170
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	9 cut(s)	308, 533, 721, 736, 1175, 1397, 1409, 1508, 2002
PflMI	CCANNNNNTGG	1 cut(s)	1363
PinAI	ACCGGT	1 cut(s)	1705
PkrI	GCNGC	7 cut(s)	30, 1092, 1317, 1741, 1744, 1747, 2199
PleI	GAGTC	3 cut(s)	271, 1474, 1848
PpsI	GAGTC	3 cut(s)	271, 1474, 1848
PscI	ACATGT	1 cut(s)	2170
PshBI	ATTAAT	1 cut(s)	1149
Psp1406I	AACGTT	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	10, 85, 703
PspFI	CCCAGC	3 cut(s)	31, 76, 1549
PspGI	CCWGG	3 cut(s)	10, 85, 703
PspN4I	GGNNCC	1 cut(s)	1665
PspPI	GGNCC	4 cut(s)	233, 1454, 1663, 2010
PsrI	GAACNNNNNNTAC	2 cut(s)	2175, 2207
PstI	CTGCAG	3 cut(s)	514, 1744, 1750
PstNI	CAGNNNCTG	2 cut(s)	373, 1327
PsuI	RGATCY	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	64
PvuII	CAGCTG	4 cut(s)	125, 146, 1745, 2197
RsaI	GTAC	4 cut(s)	60, 715, 1594, 2161
RsaNI	GTAC	4 cut(s)	59, 714, 1593, 2160
RseI	CAYNNNNRTG	1 cut(s)	1470
SaqAI	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
SatI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
Sau3AI	GATC	4 cut(s)	262, 709, 1303, 2306
Sau96I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
ScaI	AGTACT	1 cut(s)	2161
SchI	GAGTC	3 cut(s)	271, 1474, 1849
ScrFI	CCNGG	4 cut(s)	12, 87, 705, 1928
SduI	GDGCHC	2 cut(s)	259, 1549
SexAI	ACCWGGT	1 cut(s)	10
SfaNI	GCATC	5 cut(s)	778, 1324, 1621, 1789, 2244
SfcI	CTRYAG	6 cut(s)	510, 1319, 1691, 1740, 1746, 2192
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	4 cut(s)	233, 1454, 1663, 2010
SmiMI	CAYNNNNRTG	1 cut(s)	1470
SmlI	CTYRAG	4 cut(s)	258, 462, 2163, 2240
SmoI	CTYRAG	4 cut(s)	258, 462, 2163, 2240
SpeI	ACTAGT	2 cut(s)	821, 1445
SphI	GCATGC	2 cut(s)	2066, 2191
SseBI	AGGCCT	2 cut(s)	856, 1657
SsiI	CCGC	7 cut(s)	29, 415, 542, 689, 1090, 1879, 1939
SspMI	CTAG	7 cut(s)	282, 410, 822, 1179, 1446, 1884, 2157
StuI	AGGCCT	2 cut(s)	856, 1657
StyD4I	CCNGG	4 cut(s)	10, 85, 703, 1926
StyI	CCWWGG	3 cut(s)	630, 2006, 2087
TaaI	ACNGT	4 cut(s)	166, 193, 1909, 1916
TaiI	ACGT	3 cut(s)	501, 1594, 1825
TaqI	TCGA	6 cut(s)	7, 360, 536, 1412, 1701, 1838
TaqII	GACCGA	1 cut(s)	614
TatI	WGTACW	2 cut(s)	58, 2159
TauI	GCSGC	2 cut(s)	31, 1093
TfiI	GAWTC	9 cut(s)	308, 533, 721, 736, 1175, 1397, 1409, 1508, 2002
Tru1I	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
Tru9I	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
TscAI	CASTG	3 cut(s)	1344, 1504, 2142
TseFI	GTSAC	2 cut(s)	595, 824
TseI	GCWGC	5 cut(s)	1315, 1739, 1742, 1745, 2197
Tsp45I	GTSAC	2 cut(s)	595, 824
TspGWI	ACGGA	4 cut(s)	997, 1141, 1147, 1593
TspRI	CASTG	3 cut(s)	1344, 1504, 2142
Van91I	CCANNNNNTGG	1 cut(s)	1363
VpaK11BI	GGWCC	4 cut(s)	233, 1454, 1663, 2010
VspI	ATTAAT	1 cut(s)	1149
XapI	RAATTY	5 cut(s)	350, 439, 520, 1732, 1751
XbaI	TCTAGA	2 cut(s)	409, 1178
XceI	RCATGY	3 cut(s)	2066, 2174, 2191
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1364, 1472
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	7 cut(s)	282, 410, 822, 1179, 1446, 1884, 2157
ZrmI	AGTACT	1 cut(s)	2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.