Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Forward (+)

67331216 .. 67338836

Gene Structure 7621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGCTTCGACCTGGTTTTCCCTCACGGCCGCTGGGAGGAATTGCTTTGCTTCCATCTGTACAGCGCGCTCCTATGCTGGGTATTCCTGGGGTTCGCCCCGTTATGCCTCCTGTTGTTAGGCCAGCTGTTCCTAGTGTTACTCCAGCTGAGAAACCACAAACAACCGTCTATGTTGGCAAGATAGCCCCGACAGTAAACAATGATTTTATGTTATATCTCCTTCAGTTATGTGGACCTGTCAAGAGTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGATTTTGTGATTTTGAATCTGCTGAAGGGGTTCTTCGTGCATTACGCCTTCTGAGTAAATTCAACATCGATGGGCAGGAGCTGGTGTTAAATGTAAATCAAGCAACAAGAGAGTATCTAGAGCGGTTTGTTGAAAAGAAAACTGAAAATTCAAAGAAGCTGAAAGACACTCAAGCTGAGGGAGATGAGAAAGAGGGTGAGAGTAACGTTGATAAGACTGCAGTTCCAAATTCTGTTGTGGATTCGAAGGCGGAGGATAGTAATACGGGGAACAACGAAAGCAACACTACGAACTTTGGGATTGTGACCGATGAAGACAAGGAAGCTGACAGGGTGGCCATGGAGAAGCTTACAAGCTTGATAGAGGAGAGATTAAAAACAAATCCTCTGCCTCCACCGCCTCCACTTGCTCCTGGTGATCGTACTGGGAATTCAATCTCAGAGCTTCCAGCTAAGGCAAGGGATGGAGACCTTGATGTGGATATAACAAGAAATGATGCTTCTGAAGAAAAAAATGATGAAGAGACAACTAGTGACAACAAAGTTGAAAGTGAGCAGGATAGGCCTGAAACAAGCTCACCTGAGAGGAGTAGAAAGCCTGATAAAAGTAGAGAAAGAGACAGAGAGCGAGATGTGAAACAGGAAAAGGAGCGTGAGATTGAAAGATATGAAAGAGAAACAGAGCGAGAACGGATAAGGAAGGAGAGAGAGCAGAGGAGGAGAATTGAGGACGCAGAACGCAAGTTTGAAGAATGTCTCAAAGATTGGGAGTATAGGGAAAGGGAGAAACAGAAACAGCGGCAATATGAAAAGGAGAGGGAGAAAGAACGGGAACGGAAACGGAAGAAAGATATAATTAATGAAGAAGATGATGAGGAAGAAGATTCTAGAAAAAGGTGGCGCAGGAATGTGTGGGAGGAGAAGAGGAAGAGGAGACAGAGGGAGAAGGAAGATGACTTGGCTGACAGATTAAGAGAAGAGGAAGAAATTGCTGAGGCCAACAGGAGGGCTGATCAGGAAAAGCAGCTCCAGCAACTGAGAGATGCACTGAAGGCTTCATCTGACCATTTAGTGGATGGAAGAGAAATGGCAGATTTGGCTGAAGAATCCTTTGTGGAATCGAAAGATATGGCCATTAAACAGGACAATGAGACTGGTTCTGGTCCTGAGAACCATATAGGTGATGGGACTCTACAAAATGGTAACACTGGGGATGAATCAGCCAATACATCAGAACCCCAGCAGAGTGGGAGTGCCCCAGCCAAAAAGTTGGGTTTTGGTTTAGTTGGCTCTGGGAAACGTACTTCTGTTCCTTCTGTTTTCAACGAGGAGGATGATGATGCACACAAGGACAAAAAGATGAGGCCTCTGGTCCCTATTGACTATTCAACTGAAGAACTACAGGCTGTCGAACCGGTTGCTTCTGGGCAAGCGCCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGGTTCTAAAGAAGAGAAGCACGATGCAGAGAAGGAGAGAAATAGACGTGCCAATGATAGGTCGAGTCAACGGGACAGGGATAGGAATGATGATGACACTAACCGCACTAGAGATGAGAACAAGGAGAAGACTGTTGACCGTGATACAGACCGGGAACATGGGCGGGATAAACCGAGGACAACAGATAATAAGAAGCTTTTGGACGCAAAACAACTGATTGATATGATTCCAAGGACCAAAGAGGAGTTATTCTCATATGAAATAAATTGGGCTATTTATGAAAAGCATGCACTTCATGAGAGAATGAAACCATGGATTTCAAAGAAGATTACAGAGTTTCTTGGAGAGGAAGAAACCACACTGGTAGATTATATTGTATCTAGTACTCAAGAACATGTGGGAGCAGAACGCATGCTACAGCTGCTTCAATCCATTTTAGACGAGGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTAGAGACAGGCTTACCTTCAAAAACAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

770

Amino Acids

88.63

Weight (kDa)

5.2

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 125	1.9e-08	RNA recognition motif
PWI	PF01480	693 - 756	8.5e-14	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1363
AccBSI	CCGCTC	1 cut(s)	415
AccII	CGCG	1 cut(s)	66
AciI	CCGC	7 cut(s)	29, 415, 542, 689, 1090, 1879, 1939
AclI	AACGTT	1 cut(s)	498
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	3 cut(s)	26, 627, 1422
AcsI	RAATTY	6 cut(s)	350, 439, 520, 721, 1732, 1751
AcuI	CTGAAG	6 cut(s)	206, 336, 816, 1361, 1413, 1704
AfaI	GTAC	4 cut(s)	60, 715, 1594, 2161
AfiI	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
AflIII	ACRYGT	1 cut(s)	2170
AgeI	ACCGGT	1 cut(s)	1705
AhlI	ACTAGT	1 cut(s)	821
AjiI	CACGTC	1 cut(s)	1823
AjnI	CCWGG	3 cut(s)	10, 85, 703
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	2 cut(s)	373, 1327
AoxI	GGCC	7 cut(s)	26, 119, 627, 854, 1287, 1422, 1655
ApeKI	GCWGC	5 cut(s)	1315, 1739, 1742, 1745, 2197
ApoI	RAATTY	6 cut(s)	350, 439, 520, 721, 1732, 1751
AseI	ATTAAT	1 cut(s)	1149
AsiGI	ACCGGT	1 cut(s)	1705
Asp700I	GAANNNNTTC	1 cut(s)	321
AspLEI	GCGC	4 cut(s)	66, 68, 1194, 1726
AspS9I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
AsuC2I	CCSGG	1 cut(s)	1928
AsuHPI	GGTGA	4 cut(s)	500, 719, 861, 1484
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	4 cut(s)	233, 1454, 1663, 2010
BaeGI	GKGCMC	1 cut(s)	1549
BalI	TGGCCA	2 cut(s)	629, 1424
BbsI	GAAGAC	2 cut(s)	612, 1910
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	2 cut(s)	468, 1284
BbvI	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
BccI	CCATC	6 cut(s)	61, 266, 356, 749, 1361, 1469
BceAI	ACGGC	1 cut(s)	41
BcgI	CGANNNNNNTGC	2 cut(s)	1691, 1725
BciT130I	CCWGG	3 cut(s)	12, 87, 705
BclI	TGATCA	1 cut(s)	1303
BcnI	CCSGG	1 cut(s)	1928
BcoDI	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	7 cut(s)	132, 282, 410, 822, 1179, 1884, 2157
BfmI	CTRYAG	5 cut(s)	510, 1691, 1740, 1746, 2192
BfoI	RGCGCY	1 cut(s)	1727
BisI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
BlsI	GCNGC	7 cut(s)	30, 1092, 1317, 1741, 1744, 1747, 2199
BmcAI	AGTACT	1 cut(s)	2161
Bme1390I	CCNGG	4 cut(s)	12, 87, 705, 1928
Bme18I	GGWCC	4 cut(s)	233, 1454, 1663, 2010
BmgBI	CACGTC	1 cut(s)	1823
BmgT120I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
BmiI	GGNNCC	1 cut(s)	1665
BmrFI	CCNGG	4 cut(s)	12, 87, 705, 1928
BmrI	ACTGGG	2 cut(s)	726, 1509
BmsI	GCATC	5 cut(s)	778, 1324, 1621, 1789, 2244
BmuI	ACTGGG	2 cut(s)	726, 1509
BpiI	GAAGAC	2 cut(s)	612, 1910
BplI	GAGNNNNNCTC	2 cut(s)	2012, 2044
BpmI	CTGGAG	2 cut(s)	126, 1304
Bpu10I	CCTNAGC	3 cut(s)	468, 744, 1284
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	4 cut(s)	243, 447, 2148, 2225
BpuMI	CCSGG	1 cut(s)	1928
Bsa29I	ATCGAT	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	2258
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	5 cut(s)	86, 630, 1949, 2006, 2087
BsaWI	WCCGGW	1 cut(s)	1705
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
Bse118I	RCCGGY	1 cut(s)	1705
Bse1I	ACTGG	4 cut(s)	721, 1450, 1504, 2142
Bse8I	GATNNNNATC	1 cut(s)	2258
BseBI	CCWGG	3 cut(s)	12, 87, 705
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	5 cut(s)	86, 630, 1949, 2006, 2087
BseGI	GGATG	5 cut(s)	760, 1372, 1510, 1630, 2259
BseJI	GATNNNNATC	1 cut(s)	2258
BseLI	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
BseMII	CTCAG	8 cut(s)	138, 335, 459, 744, 864, 1275, 1319, 1449
BseNI	ACTGG	4 cut(s)	721, 1450, 1504, 2142
BsePI	GCGCGC	1 cut(s)	64
BseRI	GAGGAG	8 cut(s)	671, 892, 1021, 1024, 1223, 1237, 1634, 2033
BseSI	GKGCMC	1 cut(s)	1549
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
BseYI	CCCAGC	4 cut(s)	31, 76, 1530, 1549
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
BshTI	ACCGGT	1 cut(s)	1705
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	1706, 1927
BslFI	GGGAC	4 cut(s)	289, 1492, 1649, 1862
BslI	CCNNNNNNNGG	8 cut(s)	35, 77, 272, 273, 769, 1296, 1363, 1833
BsmAI	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
BsmFI	GGGAC	4 cut(s)	289, 1492, 1649, 1862
BsnI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
Bso31I	GGTCTC	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	259, 1549
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	262, 709, 1303, 2306
Bsp19I	CCATGG	2 cut(s)	630, 2087
BspACI	CCGC	7 cut(s)	29, 415, 542, 689, 1090, 1879, 1939
BspANI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
BspCNI	CTCAG	8 cut(s)	139, 336, 460, 743, 865, 1276, 1320, 1450
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	2071, 2309
BspLI	GGNNCC	1 cut(s)	1665
BspMAI	CTGCAG	3 cut(s)	514, 1744, 1750
BspPI	GGATC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	753
BsrBI	CCGCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	1705
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	4 cut(s)	721, 1450, 1504, 2142
BssAI	RCCGGY	1 cut(s)	1705
BssECI	CCNNGG	5 cut(s)	86, 630, 1949, 2006, 2087
BssHII	GCGCGC	1 cut(s)	64
BssMI	GATC	4 cut(s)	262, 709, 1303, 2306
BssT1I	CCWWGG	3 cut(s)	630, 2006, 2087
Bst2UI	CCWGG	3 cut(s)	12, 87, 705
Bst4CI	ACNGT	4 cut(s)	166, 193, 1909, 1916
Bst6I	CTCTTC	6 cut(s)	807, 1208, 1214, 1263, 1366, 1782
BstAPI	GCANNNNNTGC	1 cut(s)	1754
BstAUI	TGTACA	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	6 cut(s)	66, 123, 255, 1722, 2064, 2189
BstDEI	CTNAG	9 cut(s)	147, 344, 468, 730, 744, 873, 1284, 1328, 1458
BstDSI	CCRYGG	2 cut(s)	630, 2087
BstF5I	GGATG	5 cut(s)	760, 1372, 1510, 1630, 2259
BstFNI	CGCG	1 cut(s)	66
BstH2I	RGCGCY	1 cut(s)	1727
BstHHI	GCGC	4 cut(s)	66, 68, 1194, 1726
BstKTI	GATC	4 cut(s)	265, 712, 1306, 2309
BstMAI	GTCTC	7 cut(s)	753, 809, 903, 1052, 1219, 1436, 2276
BstMBI	GATC	4 cut(s)	262, 709, 1303, 2306
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	8 cut(s)	688, 853, 1321, 1343, 1388, 1745, 1754, 2197
BstNI	CCWGG	3 cut(s)	12, 87, 705
BstNSI	RCATGY	3 cut(s)	2066, 2174, 2191
BstSCI	CCNGG	4 cut(s)	10, 85, 703, 1926
BstSFI	CTRYAG	5 cut(s)	510, 1691, 1740, 1746, 2192
BstSLI	GKGCMC	1 cut(s)	1549
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
BstV2I	GAAGAC	2 cut(s)	612, 1910
BstX2I	RGATCY	1 cut(s)	262
BstXI	CCANNNNNNTGG	2 cut(s)	1538, 1561
BstYI	RGATCY	1 cut(s)	262
BstZI	CGGCCG	1 cut(s)	26
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	2 cut(s)	630, 2087
BtrI	CACGTC	1 cut(s)	1823
BtsCI	GGATG	5 cut(s)	760, 1372, 1510, 1630, 2259
BtsIMutI	CAGTG	3 cut(s)	1337, 1497, 2135
Cac8I	GCNNGC	6 cut(s)	66, 123, 255, 1722, 2064, 2189
CaiI	CAGNNNCTG	2 cut(s)	373, 1327
CciI	TCATGA	2 cut(s)	2071, 2309
CfoI	GCGC	4 cut(s)	66, 68, 1194, 1726
Cfr10I	RCCGGY	1 cut(s)	1705
Cfr13I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	2 cut(s)	1031, 1988
CsiI	ACCWGGT	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	59, 714, 1593, 2160
CspAI	ACCGGT	1 cut(s)	1705
CspCI	CAANNNNNGTGG	2 cut(s)	1716, 1751
CviAII	CATG	8 cut(s)	631, 1934, 2063, 2072, 2088, 2171, 2188, 2310
CviQI	GTAC	4 cut(s)	59, 714, 1593, 2160
DdeI	CTNAG	9 cut(s)	147, 344, 468, 730, 744, 873, 1284, 1328, 1458
DpnI	GATC	4 cut(s)	264, 711, 1305, 2308
DpnII	GATC	4 cut(s)	262, 709, 1303, 2306
EaeI	YGGCCR	3 cut(s)	26, 627, 1422
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	6 cut(s)	807, 1208, 1214, 1263, 1366, 1782
EarI	CTCTTC	6 cut(s)	807, 1208, 1214, 1263, 1366, 1782
EciI	GGCGGA	1 cut(s)	557
EclXI	CGGCCG	1 cut(s)	26
Eco130I	CCWWGG	3 cut(s)	630, 2006, 2087
Eco147I	AGGCCT	2 cut(s)	856, 1657
Eco31I	GGTCTC	1 cut(s)	753
Eco47I	GGWCC	4 cut(s)	233, 1454, 1663, 2010
Eco52I	CGGCCG	1 cut(s)	26
Eco57I	CTGAAG	6 cut(s)	206, 336, 816, 1361, 1413, 1704
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	3 cut(s)	10, 85, 703
EcoT14I	CCWWGG	3 cut(s)	630, 2006, 2087
ErhI	CCWWGG	3 cut(s)	630, 2006, 2087
FaeI	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	4 cut(s)	289, 1492, 1649, 1862
FatI	CATG	8 cut(s)	630, 1933, 2062, 2071, 2087, 2170, 2187, 2309
FauI	CCCGC	1 cut(s)	1932
FauNDI	CATATG	1 cut(s)	2032
FbaI	TGATCA	1 cut(s)	1303
Fnu4HI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
FokI	GGATG	5 cut(s)	767, 1379, 1517, 1637, 2266
Fsp4HI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
FspBI	CTAG	7 cut(s)	132, 282, 410, 822, 1179, 1884, 2157
GlaI	GCGC	4 cut(s)	65, 67, 1193, 1725
GluI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
GsaI	CCCAGC	4 cut(s)	35, 80, 1534, 1553
GsuI	CTGGAG	2 cut(s)	126, 1304
HaeII	RGCGCY	1 cut(s)	1727
HaeIII	GGCC	7 cut(s)	28, 121, 629, 856, 1289, 1424, 1657
HapII	CCGG	2 cut(s)	1706, 1927
HgaI	GACGC	2 cut(s)	1031, 1988
HhaI	GCGC	4 cut(s)	66, 68, 1194, 1726
Hin1II	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
Hin6I	GCGC	4 cut(s)	64, 66, 1192, 1724
HinP1I	GCGC	4 cut(s)	64, 66, 1192, 1724
HincII	GTYRAC	2 cut(s)	1844, 1912
HindII	GTYRAC	2 cut(s)	1844, 1912
HindIII	AAGCTT	3 cut(s)	638, 646, 1970
HpaII	CCGG	2 cut(s)	1706, 1927
HphI	GGTGA	4 cut(s)	500, 719, 861, 1484
Hpy166II	GTNNAC	4 cut(s)	196, 233, 1844, 1912
Hpy188I	TCNGA	5 cut(s)	345, 733, 796, 1354, 1525
Hpy8I	GTNNAC	4 cut(s)	196, 233, 1844, 1912
HpyCH4III	ACNGT	4 cut(s)	166, 193, 1909, 1916
HpyCH4IV	ACGT	3 cut(s)	498, 1591, 1822
HpyCH4V	TGCA	9 cut(s)	332, 512, 1337, 1634, 1742, 1748, 1757, 1802, 2066
HpyF10VI	GCNNNNNNNGC	8 cut(s)	688, 853, 1321, 1343, 1388, 1745, 1754, 2197
HpyF3I	CTNAG	9 cut(s)	147, 344, 468, 730, 744, 873, 1284, 1328, 1458
HpySE526I	ACGT	3 cut(s)	498, 1591, 1822
Hsp92II	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
HspAI	GCGC	4 cut(s)	64, 66, 1192, 1724
Ksp22I	TGATCA	1 cut(s)	1303
Kzo9I	GATC	4 cut(s)	262, 709, 1303, 2306
LmnI	GCTCC	6 cut(s)	73, 370, 706, 940, 1323, 2177
Lsp1109I	GCAGC	5 cut(s)	1327, 1726, 1732, 1754, 2184
LweI	GCATC	5 cut(s)	778, 1324, 1621, 1789, 2244
MabI	ACCWGGT	1 cut(s)	10
MaeI	CTAG	7 cut(s)	132, 282, 410, 822, 1179, 1884, 2157
MaeII	ACGT	3 cut(s)	498, 1591, 1822
MaeIII	GTNAC	5 cut(s)	136, 494, 595, 824, 1493
MalI	GATC	4 cut(s)	264, 711, 1305, 2308
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	4 cut(s)	262, 709, 1303, 2306
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	259, 1549
MlsI	TGGCCA	2 cut(s)	629, 1424
MluNI	TGGCCA	2 cut(s)	629, 1424
MlyI	GAGTC	3 cut(s)	271, 1474, 1849
MmeI	TCCRAC	1 cut(s)	227
Mox20I	TGGCCA	2 cut(s)	629, 1424
MroXI	GAANNNNTTC	1 cut(s)	321
MscI	TGGCCA	2 cut(s)	629, 1424
MseI	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
MslI	CAYNNNNRTG	1 cut(s)	1470
Msp20I	TGGCCA	2 cut(s)	629, 1424
MspA1I	CMGCKG	6 cut(s)	31, 125, 146, 1090, 1745, 2197
MspI	CCGG	2 cut(s)	1706, 1927
MspR9I	CCNGG	4 cut(s)	12, 87, 705, 1928
MvaI	CCWGG	3 cut(s)	12, 87, 705
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	8 cut(s)	688, 853, 1321, 1343, 1388, 1745, 1754, 2197
NciI	CCSGG	1 cut(s)	1928
NcoI	CCATGG	2 cut(s)	630, 2087
NdeI	CATATG	1 cut(s)	2032
NdeII	GATC	4 cut(s)	262, 709, 1303, 2306
NlaIII	CATG	8 cut(s)	634, 1937, 2066, 2075, 2091, 2174, 2191, 2313
NlaIV	GGNNCC	1 cut(s)	1665
NmuCI	GTSAC	2 cut(s)	595, 824
NspI	RCATGY	3 cut(s)	2066, 2174, 2191
NspV	TTCGAA	1 cut(s)	536
PaeI	GCATGC	2 cut(s)	2066, 2191
PagI	TCATGA	2 cut(s)	2071, 2309
PauI	GCGCGC	1 cut(s)	64
PceI	AGGCCT	2 cut(s)	856, 1657
PciI	ACATGT	1 cut(s)	2170
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	7 cut(s)	308, 533, 1175, 1397, 1409, 1508, 2002
PflMI	CCANNNNNTGG	1 cut(s)	1363
PinAI	ACCGGT	1 cut(s)	1705
PkrI	GCNGC	7 cut(s)	30, 1092, 1317, 1741, 1744, 1747, 2199
PleI	GAGTC	3 cut(s)	271, 1474, 1848
PpsI	GAGTC	3 cut(s)	271, 1474, 1848
PscI	ACATGT	1 cut(s)	2170
PshBI	ATTAAT	1 cut(s)	1149
Psp1406I	AACGTT	1 cut(s)	498
Psp6I	CCWGG	3 cut(s)	10, 85, 703
PspFI	CCCAGC	4 cut(s)	31, 76, 1530, 1549
PspGI	CCWGG	3 cut(s)	10, 85, 703
PspN4I	GGNNCC	1 cut(s)	1665
PspPI	GGNCC	4 cut(s)	233, 1454, 1663, 2010
PsrI	GAACNNNNNNTAC	2 cut(s)	2175, 2207
PstI	CTGCAG	3 cut(s)	514, 1744, 1750
PstNI	CAGNNNCTG	2 cut(s)	373, 1327
PsuI	RGATCY	1 cut(s)	262
PteI	GCGCGC	1 cut(s)	64
PvuII	CAGCTG	4 cut(s)	125, 146, 1745, 2197
RsaI	GTAC	4 cut(s)	60, 715, 1594, 2161
RsaNI	GTAC	4 cut(s)	59, 714, 1593, 2160
RseI	CAYNNNNRTG	1 cut(s)	1470
SaqAI	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
SatI	GCNGC	7 cut(s)	29, 1091, 1316, 1740, 1743, 1746, 2198
Sau3AI	GATC	4 cut(s)	262, 709, 1303, 2306
Sau96I	GGNCC	4 cut(s)	233, 1454, 1663, 2010
ScaI	AGTACT	1 cut(s)	2161
SchI	GAGTC	3 cut(s)	271, 1474, 1849
ScrFI	CCNGG	4 cut(s)	12, 87, 705, 1928
SduI	GDGCHC	2 cut(s)	259, 1549
SexAI	ACCWGGT	1 cut(s)	10
SfaNI	GCATC	5 cut(s)	778, 1324, 1621, 1789, 2244
SfcI	CTRYAG	5 cut(s)	510, 1691, 1740, 1746, 2192
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	4 cut(s)	233, 1454, 1663, 2010
SmiMI	CAYNNNNRTG	1 cut(s)	1470
SmlI	CTYRAG	4 cut(s)	258, 462, 2163, 2240
SmoI	CTYRAG	4 cut(s)	258, 462, 2163, 2240
SpeI	ACTAGT	1 cut(s)	821
SphI	GCATGC	2 cut(s)	2066, 2191
SseBI	AGGCCT	2 cut(s)	856, 1657
SsiI	CCGC	7 cut(s)	29, 415, 542, 689, 1090, 1879, 1939
SspMI	CTAG	7 cut(s)	132, 282, 410, 822, 1179, 1884, 2157
StuI	AGGCCT	2 cut(s)	856, 1657
StyD4I	CCNGG	4 cut(s)	10, 85, 703, 1926
StyI	CCWWGG	3 cut(s)	630, 2006, 2087
TaaI	ACNGT	4 cut(s)	166, 193, 1909, 1916
TaiI	ACGT	3 cut(s)	501, 1594, 1825
TaqI	TCGA	6 cut(s)	7, 360, 536, 1412, 1701, 1838
TaqII	GACCGA	1 cut(s)	614
TatI	WGTACW	2 cut(s)	58, 2159
TauI	GCSGC	2 cut(s)	31, 1093
TfiI	GAWTC	7 cut(s)	308, 533, 1175, 1397, 1409, 1508, 2002
Tru1I	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
Tru9I	TTAA	6 cut(s)	380, 665, 1149, 1262, 1428, 2271
TscAI	CASTG	3 cut(s)	1344, 1504, 2142
TseFI	GTSAC	2 cut(s)	595, 824
TseI	GCWGC	5 cut(s)	1315, 1739, 1742, 1745, 2197
Tsp45I	GTSAC	2 cut(s)	595, 824
TspGWI	ACGGA	3 cut(s)	997, 1141, 1147
TspRI	CASTG	3 cut(s)	1344, 1504, 2142
Van91I	CCANNNNNTGG	1 cut(s)	1363
VpaK11BI	GGWCC	4 cut(s)	233, 1454, 1663, 2010
VspI	ATTAAT	1 cut(s)	1149
XapI	RAATTY	6 cut(s)	350, 439, 520, 721, 1732, 1751
XbaI	TCTAGA	2 cut(s)	409, 1178
XceI	RCATGY	3 cut(s)	2066, 2174, 2191
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1364, 1472
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	7 cut(s)	132, 282, 410, 822, 1179, 1884, 2157
ZrmI	AGTACT	1 cut(s)	2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.