Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005357

Physical Location & Seq

Genomic Coordinates Forward (+)

61975108 .. 61979915

Gene Structure 4808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGGCCGACGATCCTCCTACTCCGGCGACGCAAGACCCGAGTCCCCAACCCGATAACCCGAATCCCCAATCCAAACAACCCGATCCCCCACCCGCTTCTACACCACCACCACCGCAACCGCAACCGCAACCATCATCCACCCCAATCCAATTAAACCCCAATCCCAATCCCCATCCAAACAATCCGCCTCTAGTTTCTCTGCCGCCTCCGCCGCCGCAGCAGCCGTCGGTCTCTTACGCCCCGCAACCGGTCTCCACCGCCTTCGCCGTTCCTCCGGCCGCGCCATCTTTCCGGCCGGTTCCTCAGTTCTCTCCATTACCGAATTATCAAACTCCCGGCGTCCCCCCGCCGGGTGTCAGCTCCGGGGCTCCGATGGTTCCCGGTGCTCCGGTGCCGGTGCCGCAACATATGATGCATTATCAGATGCAACAGCCGATGAGACCCTACGCGCCAATGCCGAATGGCTACTCAGCTCCGCCGCAGGGCACCATTCCTCCGCCTGGACTTATTCGTTATCCCTCTCCATATCCTACAATGCTTCGACCTGGTTTTCCCTCACGGCCGCTGGGAGGAATTGCTTTGCTTCCATCTGTACAGCGCGCTCCTATGCTGGGTATTCCTGGGGTTCGCCCCGTTATGCCTCCTGTTGTTAGGCCAGCTGTTCCTAGTGTTACTCCAGCTGAGAAACCACAAACAACCGTCTATGTTGGCAAGATAGCCCCGACAGTAAACAATGATTTTATGTTATATCTCCTTCAGTTATGTGGACCTGTCAAGAGTTGGAAGCGTGCTCAAGATCCCACAGATGGGACTCCTAGAGGCTTTGGATTTTGTGATTTTGAATCTGCTGAAGGGGTTCTTCGTGCGTTACGCCTTCTGAGTAAATTCAACATTGATGGGCAGGAGCTGGTGTTAAATGTAAATCAAGCAACAAGAGAGTATCTAGAGCGGTTTGTTGAAAAGAAAACTGAAAATTCAAAGAAGCTGAAAGACACTCAAGCTGAGGGAGATGAGAAAGAGGGTGAGAGTAACGTTGATAAGACTGCAGTTCCAAATTCTGTTGTGGATTCGAAGGCGGAGGATAGTAATACAGGGAACAAAGAAAGCAACACTACGAACTTTGGGATTGTGACCGATGAAGACAAGGAAGCTGACAGGGTGGCCATGGAGAAGCTTACAAGCTTTATAGAGGAGAGATTAAAAACAAACCCTCTGCCTCCACCGCCTCCACTTGCTCCTGGTGATCGTACTGGGAATCCAATCTCAGAGCTTCCAGCTAAGGCAAGGGATGGAGACCTTGATGTGGATATAACAAGAAATGATGCTTCTGAAGAAAAAAATGATGAAGAGACAACTAGTGACAACAAAGCTGAAAGTGAGCAGGATAGGCCTGAAACAAGCTCACCTGAGAGGAGTAGAAAGCCTGATAAAAGTAGAGAAAGAGACAGAGAGCGAGATGTGAAACAGGAAAAGGAGCGTGAGATTGAAAGATATGAAAGAGAAACAGAGCGAGAACGGATAAGGAAGGAGAGAGAGCAGAGGAGGAGAATTGAGGACGCAGAACGCAAGTTTGAAGAATGTCTCAAAGATTGGGAGTATAGGGAAAGGGAGAAACAGAAACAGCGGCAATATGAAAAGGAGAGGGAGAAAGAACGGGAACGGAAACGGAAGAAAGATATAATTAATGAAGAAGATGATGAGGAAGAAGATTCTAGAAAAAGGTGGCGCAGGAATGTGTGGGAGGAGAAGAGGAAGAGGAGACAGAGGGAGAAGGAAGATGACTTGGCTGACAGATTAAGAGAAGAGGAAGAAATTGCTGAGGCCAACAGGAGGGCTGATCAGGAAAAGCAGCTACAGCAACTGAGAGATGCACTGAAGGCTTCATCTGACCATTTAGTGGATGGAAGAGAAACGGCAGATTTGGCTGAAGAATCCTTTGTGGATTCGAAAGATATGGCCATTAAACAGGACAATGAGACTAGTTCTGGTCCTGAGAACCATATAGGTGATGGGACTCTACAAAATGGTAACACTGGGGATGAATCAGCCAATACATCAGAACCCCAGCAGAGCGGGAGTGCCCCAGCCAAAAAGTTGGGTTTTGGTTTAGTTGGCTCTGGGAAACGTACTTCTGTTCCGTCTGTTTTCAACGAGGAGGATGATGATGCACACAAGGACAAAAAGATGAGGCCTCTGGTCCCTATTGACTATTCAACTGAAGAACTACAGGCTGTCGAACCGGTTGCTTCTGGGCAAGCGCCACCAAATTTGGCTGCAGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGGTTCTAAAGAAGAGAAGCACGATGCAGAGAAGGAGAGAAATAGACGTGCCAATGATAGGTCGAGTCAACGGGACAGGGATAGGAATGATGATGACACTAACCGCACTAGAGATGAGAACAAGGAGAAGACTGTTGACCGTGATACAGACCGGGAACATGGGCGGGATAAACCGAGGACAACAGATAATAAGAAGCTTTTGGACGCAAAACAACTGATTGATATGATTCCAAGGACCAAAGAGGAGTTATTCTCATATGAAATAAATTGGGCTATTTATGAAAAGCATGCACTTCATGAGAGAATGAAACCATGGATTTCAAAGAAGATTACAGAGTTTCTTGGAGAGGAAGAAACCACACTGGTAGATTATATTGTATCTAGTACTCAAGAACATGTGGGAGCAGAACGCATGCTACAGCTGCTTCAATCCATTTTAGACGAGGAAGCTGAAATGTTTGTTCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAGGTAGAGACAGGCTTACCTTCAAAAACAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0008150 GO:0010468 GO:0010941 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031974 GO:0031981 GO:0032991 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

948

Amino Acids

107.35

Weight (kDa)

5.26

Isoelectric Point (pI)

62.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	234 - 303	2.5e-08	RNA recognition motif
PWI	PF01480	871 - 934	1.1e-13	PWI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60200 AT1G60200 AT1G60200 AT1G60200
fragaria_vesca	FvH4_4g34570 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571 FvH4_4g34571
malus_domestica	MD13G1091200.v1.1 MD16G1091700.v1.1
prunus_persica	Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1 Prupe.1G254700_v2.0.a1
pyrus_communis	pycom13g07940 pycom16g07830
rosa_chinensis	RchiOBHm_Chr4g0443951
rosa_laevigata	RLG00000005874
rosa_multiflora	Rmu_sc0011390.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384490
rosa_rugosa	Rorug04G0348500 Rorug04G0348500
rosa_samantha	Rh4AG409100 Rh4BG420200 Rh4CG434200 Rh4DG415200
rosa_wichuraiana	Rw4G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	391, 397, 485
AccB7I	CCANNNNNTGG	1 cut(s)	1897
AccBSI	CCGCTC	2 cut(s)	949, 2073
AccII	CGCG	3 cut(s)	281, 449, 600
AclI	AACGTT	1 cut(s)	1032
AclWI	GGATC	3 cut(s)	5, 77, 791
AcoI	YGGCCR	6 cut(s)	3, 276, 293, 560, 1161, 1956
AcsI	RAATTY	5 cut(s)	884, 973, 1054, 2266, 2285
AcuI	CTGAAG	6 cut(s)	740, 870, 1350, 1895, 1947, 2238
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	4 cut(s)	594, 1249, 2128, 2695
AflIII	ACRYGT	1 cut(s)	2704
AgeI	ACCGGT	2 cut(s)	247, 2239
AhlI	ACTAGT	2 cut(s)	1355, 1979
AjiI	CACGTC	1 cut(s)	2357
AjnI	CCWGG	4 cut(s)	499, 544, 619, 1237
Alw21I	GWGCWC	2 cut(s)	388, 793
AlwI	GGATC	3 cut(s)	5, 77, 791
AlwNI	CAGNNNCTG	2 cut(s)	907, 1861
Ama87I	CYCGRG	1 cut(s)	37
ApeKI	GCWGC	7 cut(s)	217, 220, 1849, 2273, 2276, 2279, 2731
ApoI	RAATTY	5 cut(s)	884, 973, 1054, 2266, 2285
AseI	ATTAAT	1 cut(s)	1683
AsiGI	ACCGGT	2 cut(s)	247, 2239
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	6 cut(s)	283, 451, 600, 602, 1728, 2260
AspS9I	GGNCC	4 cut(s)	767, 1988, 2197, 2544
AsuC2I	CCSGG	5 cut(s)	336, 351, 364, 381, 2462
AsuHPI	GGTGA	4 cut(s)	1034, 1253, 1395, 2018
AsuII	TTCGAA	2 cut(s)	1070, 1946
AvaI	CYCGRG	1 cut(s)	37
AvaII	GGWCC	4 cut(s)	767, 1988, 2197, 2544
BaeGI	GKGCMC	2 cut(s)	488, 2083
BalI	TGGCCA	2 cut(s)	1163, 1958
BanI	GGYRCC	3 cut(s)	391, 397, 485
BanII	GRGCYC	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	1146, 2444
Bbv12I	GWGCWC	2 cut(s)	388, 793
BbvCI	CCTCAGC	2 cut(s)	1002, 1818
BbvI	GCAGC	7 cut(s)	229, 232, 1861, 2260, 2266, 2288, 2718
BceAI	ACGGC	4 cut(s)	208, 251, 575, 1929
BcgI	CGANNNNNNTGC	2 cut(s)	2225, 2259
BciT130I	CCWGG	4 cut(s)	501, 546, 621, 1239
BclI	TGATCA	1 cut(s)	1837
BcnI	CCSGG	5 cut(s)	336, 351, 364, 381, 2462
BcuI	ACTAGT	2 cut(s)	1355, 1979
BfaI	CTAG	9 cut(s)	191, 666, 816, 944, 1356, 1713, 1980, 2418, 2691
BfmI	CTRYAG	6 cut(s)	1044, 1853, 2225, 2274, 2280, 2726
BfoI	RGCGCY	1 cut(s)	2261
BmcAI	AGTACT	1 cut(s)	2695
Bme1390I	CCNGG	9 cut(s)	336, 351, 364, 381, 501, 546, 621, 1239, 2462
Bme18I	GGWCC	4 cut(s)	767, 1988, 2197, 2544
BmeT110I	CYCGRG	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	2357
BmgT120I	GGNCC	4 cut(s)	767, 1988, 2197, 2544
BmiI	GGNNCC	7 cut(s)	300, 369, 378, 393, 399, 487, 2199
BmrFI	CCNGG	9 cut(s)	336, 351, 364, 381, 501, 546, 621, 1239, 2462
BmrI	ACTGGG	2 cut(s)	1260, 2043
BmsI	GCATC	7 cut(s)	402, 414, 1312, 1858, 2155, 2323, 2778
BmuI	ACTGGG	2 cut(s)	1260, 2043
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	1146, 2444
BplI	GAGNNNNNCTC	2 cut(s)	2546, 2578
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	3 cut(s)	1002, 1278, 1818
Bpu14I	TTCGAA	2 cut(s)	1070, 1946
BpuEI	CTTGAG	4 cut(s)	777, 981, 2682, 2759
BpuMI	CCSGG	5 cut(s)	336, 351, 364, 381, 2462
BsaBI	GATNNNNATC	1 cut(s)	2792
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	4 cut(s)	235, 256, 433, 1287
BsaJI	CCNNGG	6 cut(s)	363, 620, 1164, 2483, 2540, 2621
BsaWI	WCCGGW	3 cut(s)	247, 388, 2239
BsaXI	ACNNNNNCTCC	4 cut(s)	478, 508, 896, 926
Bse118I	RCCGGY	4 cut(s)	247, 295, 394, 2239
Bse1I	ACTGG	3 cut(s)	1255, 2038, 2676
Bse8I	GATNNNNATC	1 cut(s)	2792
BseBI	CCWGG	4 cut(s)	501, 546, 621, 1239
BseDI	CCNNGG	6 cut(s)	363, 620, 1164, 2483, 2540, 2621
BseGI	GGATG	7 cut(s)	134, 172, 1294, 1906, 2044, 2164, 2793
BseJI	GATNNNNATC	1 cut(s)	2792
BseNI	ACTGG	3 cut(s)	1255, 2038, 2676
BsePI	GCGCGC	1 cut(s)	598
BseRI	GAGGAG	8 cut(s)	1205, 1426, 1555, 1558, 1757, 1771, 2168, 2567
BseSI	GKGCMC	2 cut(s)	488, 2083
BseX3I	CGGCCG	3 cut(s)	276, 293, 560
BseXI	GCAGC	7 cut(s)	229, 232, 1861, 2260, 2266, 2288, 2718
BseYI	CCCAGC	4 cut(s)	565, 610, 2064, 2083
Bsh1236I	CGCG	3 cut(s)	281, 449, 600
Bsh1285I	CGRYCG	3 cut(s)	279, 296, 563
BshNI	GGYRCC	3 cut(s)	391, 397, 485
BshTI	ACCGGT	2 cut(s)	247, 2239
BsiEI	CGRYCG	3 cut(s)	279, 296, 563
BsiHKAI	GWGCWC	2 cut(s)	388, 793
BsiHKCI	CYCGRG	1 cut(s)	37
BslFI	GGGAC	6 cut(s)	27, 326, 823, 2026, 2183, 2396
BsmFI	GGGAC	6 cut(s)	27, 326, 823, 2026, 2183, 2396
Bso31I	GGTCTC	4 cut(s)	235, 256, 433, 1287
BsoBI	CYCGRG	1 cut(s)	37
Bsp119I	TTCGAA	2 cut(s)	1070, 1946
Bsp1286I	GDGCHC	5 cut(s)	370, 388, 488, 793, 2083
Bsp1407I	TGTACA	1 cut(s)	592
Bsp143I	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
Bsp19I	CCATGG	2 cut(s)	1164, 2621
BspFNI	CGCG	3 cut(s)	281, 449, 600
BspHI	TCATGA	2 cut(s)	2605, 2843
BspLI	GGNNCC	7 cut(s)	300, 369, 378, 393, 399, 487, 2199
BspMAI	CTGCAG	3 cut(s)	1048, 2278, 2284
BspPI	GGATC	3 cut(s)	5, 77, 791
BspT104I	TTCGAA	2 cut(s)	1070, 1946
BspT107I	GGYRCC	3 cut(s)	391, 397, 485
BspTNI	GGTCTC	4 cut(s)	235, 256, 433, 1287
BsrBI	CCGCTC	2 cut(s)	949, 2073
BsrFI	RCCGGY	4 cut(s)	247, 295, 394, 2239
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	3 cut(s)	1255, 2038, 2676
BssAI	RCCGGY	4 cut(s)	247, 295, 394, 2239
BssECI	CCNNGG	6 cut(s)	363, 620, 1164, 2483, 2540, 2621
BssHII	GCGCGC	1 cut(s)	598
BssMI	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	3 cut(s)	1164, 2540, 2621
Bst2UI	CCWGG	4 cut(s)	501, 546, 621, 1239
Bst4CI	ACNGT	4 cut(s)	700, 727, 2443, 2450
Bst6I	CTCTTC	6 cut(s)	1341, 1742, 1748, 1797, 1900, 2316
BstACI	GRCGYC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	2288
BstAUI	TGTACA	1 cut(s)	592
BstBI	TTCGAA	2 cut(s)	1070, 1946
BstC8I	GCNNGC	6 cut(s)	600, 657, 789, 2256, 2598, 2723
BstDSI	CCRYGG	2 cut(s)	1164, 2621
BstF5I	GGATG	7 cut(s)	134, 172, 1294, 1906, 2044, 2164, 2793
BstFNI	CGCG	3 cut(s)	281, 449, 600
BstH2I	RGCGCY	1 cut(s)	2261
BstHHI	GCGC	6 cut(s)	283, 451, 600, 602, 1728, 2260
BstKTI	GATC	6 cut(s)	13, 85, 799, 1246, 1840, 2843
BstMBI	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
BstMCI	CGRYCG	3 cut(s)	279, 296, 563
BstNI	CCWGG	4 cut(s)	501, 546, 621, 1239
BstNSI	RCATGY	3 cut(s)	2600, 2708, 2725
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	9 cut(s)	334, 349, 362, 379, 499, 544, 619, 1237, 2460
BstSFI	CTRYAG	6 cut(s)	1044, 1853, 2225, 2274, 2280, 2726
BstSLI	GKGCMC	2 cut(s)	488, 2083
BstUI	CGCG	3 cut(s)	281, 449, 600
BstV1I	GCAGC	7 cut(s)	229, 232, 1861, 2260, 2266, 2288, 2718
BstV2I	GAAGAC	2 cut(s)	1146, 2444
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	2095
BstYI	RGATCY	1 cut(s)	796
BstZI	CGGCCG	3 cut(s)	276, 293, 560
BtgI	CCRYGG	2 cut(s)	1164, 2621
BtrI	CACGTC	1 cut(s)	2357
BtsCI	GGATG	7 cut(s)	134, 172, 1294, 1906, 2044, 2164, 2793
BtsIMutI	CAGTG	3 cut(s)	1871, 2031, 2669
Cac8I	GCNNGC	6 cut(s)	600, 657, 789, 2256, 2598, 2723
CaiI	CAGNNNCTG	2 cut(s)	907, 1861
CciI	TCATGA	2 cut(s)	2605, 2843
CfoI	GCGC	6 cut(s)	283, 451, 600, 602, 1728, 2260
Cfr10I	RCCGGY	4 cut(s)	247, 295, 394, 2239
Cfr13I	GGNCC	4 cut(s)	767, 1988, 2197, 2544
CseI	GACGC	4 cut(s)	37, 328, 1565, 2522
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	4 cut(s)	593, 1248, 2127, 2694
CspAI	ACCGGT	2 cut(s)	247, 2239
CspCI	CAANNNNNGTGG	2 cut(s)	2250, 2285
CviAII	CATG	8 cut(s)	1165, 2468, 2597, 2606, 2622, 2705, 2722, 2844
CviQI	GTAC	4 cut(s)	593, 1248, 2127, 2694
DpnI	GATC	6 cut(s)	12, 84, 798, 1245, 1839, 2842
DpnII	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
EaeI	YGGCCR	6 cut(s)	3, 276, 293, 560, 1161, 1956
EagI	CGGCCG	3 cut(s)	276, 293, 560
Eam1104I	CTCTTC	6 cut(s)	1341, 1742, 1748, 1797, 1900, 2316
EarI	CTCTTC	6 cut(s)	1341, 1742, 1748, 1797, 1900, 2316
EciI	GGCGGA	5 cut(s)	174, 198, 465, 486, 1091
EclXI	CGGCCG	3 cut(s)	276, 293, 560
Eco130I	CCWWGG	3 cut(s)	1164, 2540, 2621
Eco147I	AGGCCT	2 cut(s)	1390, 2191
Eco24I	GRGCYC	1 cut(s)	370
Eco31I	GGTCTC	4 cut(s)	235, 256, 433, 1287
Eco47I	GGWCC	4 cut(s)	767, 1988, 2197, 2544
Eco52I	CGGCCG	3 cut(s)	276, 293, 560
Eco57I	CTGAAG	6 cut(s)	740, 870, 1350, 1895, 1947, 2238
Eco88I	CYCGRG	1 cut(s)	37
EcoRII	CCWGG	4 cut(s)	499, 544, 619, 1237
EcoT14I	CCWWGG	3 cut(s)	1164, 2540, 2621
EcoT22I	ATGCAT	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	3 cut(s)	1164, 2540, 2621
FaeI	CATG	8 cut(s)	1168, 2471, 2600, 2609, 2625, 2708, 2725, 2847
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	6 cut(s)	27, 326, 823, 2026, 2183, 2396
FatI	CATG	8 cut(s)	1164, 2467, 2596, 2605, 2621, 2704, 2721, 2843
FauI	CCCGC	5 cut(s)	100, 249, 354, 2066, 2466
FauNDI	CATATG	2 cut(s)	408, 2566
FbaI	TGATCA	1 cut(s)	1837
FokI	GGATG	7 cut(s)	121, 159, 1301, 1913, 2051, 2171, 2800
FriOI	GRGCYC	1 cut(s)	370
FspBI	CTAG	9 cut(s)	191, 666, 816, 944, 1356, 1713, 1980, 2418, 2691
GlaI	GCGC	6 cut(s)	282, 450, 599, 601, 1727, 2259
GsaI	CCCAGC	4 cut(s)	569, 614, 2068, 2087
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	2261
HgaI	GACGC	4 cut(s)	37, 328, 1565, 2522
HhaI	GCGC	6 cut(s)	283, 451, 600, 602, 1728, 2260
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	8 cut(s)	1168, 2471, 2600, 2609, 2625, 2708, 2725, 2847
Hin6I	GCGC	6 cut(s)	281, 449, 598, 600, 1726, 2258
HinP1I	GCGC	6 cut(s)	281, 449, 598, 600, 1726, 2258
HincII	GTYRAC	2 cut(s)	2378, 2446
HindII	GTYRAC	2 cut(s)	2378, 2446
HindIII	AAGCTT	3 cut(s)	1172, 1180, 2504
HphI	GGTGA	4 cut(s)	1034, 1253, 1395, 2018
Hpy166II	GTNNAC	4 cut(s)	730, 767, 2378, 2446
Hpy188I	TCNGA	7 cut(s)	372, 423, 879, 1267, 1330, 1888, 2059
Hpy8I	GTNNAC	4 cut(s)	730, 767, 2378, 2446
Hpy99I	CGWCG	3 cut(s)	11, 31, 229
HpyCH4III	ACNGT	4 cut(s)	700, 727, 2443, 2450
HpyCH4IV	ACGT	3 cut(s)	1032, 2125, 2356
HpySE526I	ACGT	3 cut(s)	1032, 2125, 2356
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	8 cut(s)	1168, 2471, 2600, 2609, 2625, 2708, 2725, 2847
HspAI	GCGC	6 cut(s)	281, 449, 598, 600, 1726, 2258
Ksp22I	TGATCA	1 cut(s)	1837
Kzo9I	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
LmnI	GCTCC	9 cut(s)	365, 373, 391, 478, 607, 904, 1240, 1474, 2711
Lsp1109I	GCAGC	7 cut(s)	229, 232, 1861, 2260, 2266, 2288, 2718
LweI	GCATC	7 cut(s)	402, 414, 1312, 1858, 2155, 2323, 2778
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	9 cut(s)	191, 666, 816, 944, 1356, 1713, 1980, 2418, 2691
MaeII	ACGT	3 cut(s)	1032, 2125, 2356
MaeIII	GTNAC	6 cut(s)	670, 867, 1028, 1129, 1358, 2027
MalI	GATC	6 cut(s)	12, 84, 798, 1245, 1839, 2842
MbiI	CCGCTC	2 cut(s)	949, 2073
MboI	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	5 cut(s)	370, 388, 488, 793, 2083
MlsI	TGGCCA	2 cut(s)	1163, 1958
MluNI	TGGCCA	2 cut(s)	1163, 1958
MlyI	GAGTC	4 cut(s)	49, 805, 2008, 2383
MmeI	TCCRAC	1 cut(s)	761
Mox20I	TGGCCA	2 cut(s)	1163, 1958
Mph1103I	ATGCAT	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	855
MscI	TGGCCA	2 cut(s)	1163, 1958
MseI	TTAA	7 cut(s)	152, 914, 1199, 1683, 1796, 1962, 2805
MslI	CAYNNNNRTG	1 cut(s)	2004
Msp20I	TGGCCA	2 cut(s)	1163, 1958
MspA1I	CMGCKG	6 cut(s)	565, 659, 680, 1624, 2279, 2731
MspR9I	CCNGG	9 cut(s)	336, 351, 364, 381, 501, 546, 621, 1239, 2462
MvaI	CCWGG	4 cut(s)	501, 546, 621, 1239
MvnI	CGCG	3 cut(s)	281, 449, 600
NciI	CCSGG	5 cut(s)	336, 351, 364, 381, 2462
NcoI	CCATGG	2 cut(s)	1164, 2621
NdeI	CATATG	2 cut(s)	408, 2566
NdeII	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
NlaIII	CATG	8 cut(s)	1168, 2471, 2600, 2609, 2625, 2708, 2725, 2847
NlaIV	GGNNCC	7 cut(s)	300, 369, 378, 393, 399, 487, 2199
NmuCI	GTSAC	2 cut(s)	1129, 1358
NsiI	ATGCAT	1 cut(s)	417
NspI	RCATGY	3 cut(s)	2600, 2708, 2725
NspV	TTCGAA	2 cut(s)	1070, 1946
PaeI	GCATGC	2 cut(s)	2600, 2725
PagI	TCATGA	2 cut(s)	2605, 2843
PauI	GCGCGC	1 cut(s)	598
PceI	AGGCCT	2 cut(s)	1390, 2191
PciI	ACATGT	1 cut(s)	2704
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	9 cut(s)	61, 842, 1067, 1255, 1709, 1931, 1943, 2042, 2536
PflMI	CCANNNNNTGG	1 cut(s)	1897
PinAI	ACCGGT	2 cut(s)	247, 2239
PleI	GAGTC	4 cut(s)	48, 805, 2008, 2382
PpsI	GAGTC	4 cut(s)	48, 805, 2008, 2382
PscI	ACATGT	1 cut(s)	2704
PshAI	GACNNNNGTC	1 cut(s)	39
PshBI	ATTAAT	1 cut(s)	1683
Psp1406I	AACGTT	1 cut(s)	1032
Psp6I	CCWGG	4 cut(s)	499, 544, 619, 1237
PspFI	CCCAGC	4 cut(s)	565, 610, 2064, 2083
PspGI	CCWGG	4 cut(s)	499, 544, 619, 1237
PspN4I	GGNNCC	7 cut(s)	300, 369, 378, 393, 399, 487, 2199
PspPI	GGNCC	4 cut(s)	767, 1988, 2197, 2544
PsrI	GAACNNNNNNTAC	2 cut(s)	2709, 2741
PstI	CTGCAG	3 cut(s)	1048, 2278, 2284
PstNI	CAGNNNCTG	2 cut(s)	907, 1861
PsuI	RGATCY	1 cut(s)	796
PteI	GCGCGC	1 cut(s)	598
PvuII	CAGCTG	4 cut(s)	659, 680, 2279, 2731
RsaI	GTAC	4 cut(s)	594, 1249, 2128, 2695
RsaNI	GTAC	4 cut(s)	593, 1248, 2127, 2694
RseI	CAYNNNNRTG	1 cut(s)	2004
SaqAI	TTAA	7 cut(s)	152, 914, 1199, 1683, 1796, 1962, 2805
Sau3AI	GATC	6 cut(s)	10, 82, 796, 1243, 1837, 2840
Sau96I	GGNCC	4 cut(s)	767, 1988, 2197, 2544
ScaI	AGTACT	1 cut(s)	2695
SchI	GAGTC	4 cut(s)	49, 805, 2008, 2383
ScrFI	CCNGG	9 cut(s)	336, 351, 364, 381, 501, 546, 621, 1239, 2462
SduI	GDGCHC	5 cut(s)	370, 388, 488, 793, 2083
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	7 cut(s)	402, 414, 1312, 1858, 2155, 2323, 2778
SfcI	CTRYAG	6 cut(s)	1044, 1853, 2225, 2274, 2280, 2726
SfuI	TTCGAA	2 cut(s)	1070, 1946
SinI	GGWCC	4 cut(s)	767, 1988, 2197, 2544
SmiMI	CAYNNNNRTG	1 cut(s)	2004
SmlI	CTYRAG	4 cut(s)	792, 996, 2697, 2774
SmoI	CTYRAG	4 cut(s)	792, 996, 2697, 2774
SpeI	ACTAGT	2 cut(s)	1355, 1979
SphI	GCATGC	2 cut(s)	2600, 2725
SseBI	AGGCCT	2 cut(s)	1390, 2191
SspMI	CTAG	9 cut(s)	191, 666, 816, 944, 1356, 1713, 1980, 2418, 2691
StuI	AGGCCT	2 cut(s)	1390, 2191
StyD4I	CCNGG	9 cut(s)	334, 349, 362, 379, 499, 544, 619, 1237, 2460
StyI	CCWWGG	3 cut(s)	1164, 2540, 2621
TaaI	ACNGT	4 cut(s)	700, 727, 2443, 2450
TaiI	ACGT	3 cut(s)	1035, 2128, 2359
TaqI	TCGA	5 cut(s)	541, 1070, 1946, 2235, 2372
TaqII	GACCGA	2 cut(s)	217, 1148
TatI	WGTACW	2 cut(s)	592, 2693
TauI	GCSGC	8 cut(s)	205, 214, 217, 281, 403, 481, 565, 1627
TfiI	GAWTC	9 cut(s)	61, 842, 1067, 1255, 1709, 1931, 1943, 2042, 2536
Tru1I	TTAA	7 cut(s)	152, 914, 1199, 1683, 1796, 1962, 2805
Tru9I	TTAA	7 cut(s)	152, 914, 1199, 1683, 1796, 1962, 2805
TscAI	CASTG	3 cut(s)	1878, 2038, 2676
TseFI	GTSAC	2 cut(s)	1129, 1358
TseI	GCWGC	7 cut(s)	217, 220, 1849, 2273, 2276, 2279, 2731
Tsp45I	GTSAC	2 cut(s)	1129, 1358
TspGWI	ACGGA	4 cut(s)	1531, 1675, 1681, 2127
TspRI	CASTG	3 cut(s)	1878, 2038, 2676
Van91I	CCANNNNNTGG	1 cut(s)	1897
VpaK11BI	GGWCC	4 cut(s)	767, 1988, 2197, 2544
VspI	ATTAAT	1 cut(s)	1683
XapI	RAATTY	5 cut(s)	884, 973, 1054, 2266, 2285
XbaI	TCTAGA	2 cut(s)	943, 1712
XceI	RCATGY	3 cut(s)	2600, 2708, 2725
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1898, 2006
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	9 cut(s)	191, 666, 816, 944, 1356, 1713, 1980, 2418, 2691
ZrmI	AGTACT	1 cut(s)	2695
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.