Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

33644751 .. 33657284

Gene Structure 12534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36930.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4377 bp

ATGGCTCCGTCGCGTAGACGCGGAGCGAACAAGGCTAAGAACAAGGCGCAGCTGAGCCTCGGCGATCTTGTCCTCGCCAAGGTCAAGGGTCACCCCTTCTGGCCCGCCAAGATCAGCAAGCCTGAAGATTGGCAGAAAGTCCCTGATCCTAAGAAGTATTTTGTGCAATTCTTTGGAACAGAAGAGATAGCTTTTGTTGCACCTGTAGATATTCAGGCATTCACTAGTGATTCAAAAAGTAAAATATCAGCTCGCTGTCAAGGCAAATCAAAGTATTTTTCCCAAGCGGTGAAGGAAATATGTGAAGCATTTGATGAGTTGCAGAAAAAGAACTCAAATGATTTGAGGGTTGATACTGATAGATCAGACCATGGATGTGATGCTCTGTCTGTTGATGGGGTTGAGGATAATGGGGTTAATGTCGAGATAAAAGATGATAAGGGTGTAGTTGGTTCTGATGGAGAAACAGTTAAGGAAGAATGCACAGGTGATTTCGGCTCTAAGTTGGAGCGTTGTTCACAGTTACGAGGTGAAAATGATACTGAAGACGTAGACCCATCTACCTCTTGTGGAGCAAAGGAGAGTTCATCTCCTGTCTTTTCTTCTGAGGAAAAGGATAAAATGTCTTCAGTTGTTCACCCCAAGGTACCAAAGACGTCCAATTCTTCTCATTTGAAGACAGAAGTTTCTGATCTTAAGCATGAAGATGATGATATTCACTCCAAGAAACATGGTGAGGGACAGAGGTCATTAGTAAATGGTCACAAGATGACCAAGAGTAGTGGTTCAAAGAAGAGAAGTGATGGTATGGTTGAAGTACACAAGGGCAGCTCTTTAACGTCATTGAAGGAAGATGGTTCTATTGGTTGCGTTGATCGCCCACAATCTCATGACCGATTGAGAGATGGAACAACAGGCAAAACTGTCTCTGGTAGCAATAAAAGAAAGTTATCCCAAGATTCGCTTAAACCTGAAACTGGAATTGGGGATGGGAAAAGGTCGAAAGACCTGCTTAAGGCCAAAAAGTATGTCAAGGTAGAAGAGGCAAAGAACTCTGTGGATGATCTTGAAGCCCAGACCAGAGATAGACTTTCAGGAAGACCAAAGAATGCTCATGTTGGGCGTGGAAAGCCTGATTTGGGATCAAATGATATTTCACATCTGTCCAAAAAGTCGAAGCATGTAGATGCAGGGGAAAATACTCGGCGGGGTTCATTCTCAAAAAGTCCTCCTAGTACTAATGTTGCTAACCAGAAGACGGTTAAAAAATTGGATTCGAAAGTGTCTACTTCACGTGTTAAATCGGAGAACAATCTGGTATCCAAATCCCAAAATGTCAATGCTTCTGGTGATGAAGCTGTTCTACCCCTAGCAAAGCGTCGTCGTCGAGCGATGGAGGCTATGTCTGATTCTGACACTTTGGTTTCTGATGATAAAATGGAAAAGGCTCCTGTTCAGAAGAATAATATAGCTCGGTCTAGTGATGTCAAAGTTTCAGCACCTCAGACACAGAGAAAGCGTAGAGCTGTATGCCTTTATGATGATGAGGAGGAGGAAGAAAAACCCAAAACCCCTGTTCATGGAGGCTCTTCCCGGAATGTTAAAGCACCTTCAAATATTTCAGATGGTATAAAGAGCACTAATAAAAATATTGAGGGTTCTGATATTGCTCTACACAGTACAAAGCATTCTACTCAAGTTCATGGTAGCAGTACAAAGGAATCATCTTCCCAGCTAAAGACTTGGTCTTTGTCCCCTGGCAAACCTGTAGTAGATGAGAAGAGGTCTCAGAAGCAAACTCAAACTGATGAAATGAGGCTTGAAAAGTCGGTGCACGCCTACCACAGTCCAGCAAAATTAGAATCCGACCAGCAGTTGTCCAAAGAGTTAAAACCAACCGTGCCTTCTCCTAAGATGTCTCCTATGTTGGTTTCTGCTACTAAACCTGCAGTAGAACAGCAAAAAGCAACTAAAGCCCCAGTTAAAGGCTCTAATTCTGCAATTCAGAAAAAGGCTCAGGCTGTATCAGTCAACAGTTCGAGAACAGTTTCTAGTAGTTTGGTTTCCTCTCAAAAACCTAAACCTACGGCACGACCCATCTCCCGGACCATTGACTCTACTATTTTACAGGAAAATACAACAGAGTACAATTTGTTACCCACAGAAAGAATGGAAGTTGGAAAAGAAGATAAAACTGCCTTATTGGTTGATTCTAACACACTGGAATCTTCTTCATCTTTGAAGCATCTAATTGCAGTTGCACAAGCAAAAAGGAAACAAACGCAGTCGCATAACTACAGCTTTGATTTTTCCAGTTCTGCTTTTTTGTCTAGCACAGATGGAACATGCCCCAGTCCTTTGGCAGCTCAGGGTCTTTATCCCATGAGTAGCAGTGCATTGCAGGCAGATGTTCCAGGATCTATACAAACCACAAACATAGTTTCTCCTTCTCATAGTCGCCCTTCTGCATTACAAAATCAAGTAGACATTGAGGACCTTTCAGAAAGAAGAGTTAGTTCTGGGCATCAGACAGCAGGAGGATCACTGAGTGGCGGTACCGAGGCAGCTGTTGCCCGTGATGCTTTTGAAGGGATGATAGAAACTTTGTCAAGGACCAAGGAAAGTATTAGTCGTGCAACTCGCTGTGCCCTTGATTGTGCCAAGTATGGTATTGCTAATGAGGTTGTGGAACTGCTTATCCGAAAGCTGGAGAGTGAGCCAAGTTTTCATCGTAAGGTTGACCTGTTCTTTCTCGTGGACTCCATTACACAAATCTCACATACTCAAAAAGGTATTGCGGGAGCTTCATATGTTCCAACTGTTCAAGCAGCGTTGCCACGGCTTCTAGGTGCTGCTGCTCCACCTGGTTCTGGTGCTCGTGAGAATCGTCGTCAGTGTCATAAGGTTTTACGGCTCTGGCTTGAGAGGAAAATTTTTCCACAAGGTGTTCTTCGTCGGTACATGGATGATATTGGAGTCTCAAATGATGATACAACTGCTGGTTTCTCCCTTAGACGTCCATCTCGATCAGAGCGTGCCATTGATGATCCAATTAGAGAAATGGAAGGAATGTTTGTGGATGAGTATGGCAGCAATGCGACATTTCAGTTGCCTGGATTTCTATCTTCTCATGCATTTGAAGATGATGATGAGGAAGAAGAAGAAGAAGTTCCAAGCTGTTCATACAAGGAGGCTAGTCATCCATCACCGGTAGAAACTACCCATGCATCTGGGGAGTCAGAAGCATGTGCTGTTACTCCAAATGATAGGCGGCATTGCATCTTAGAGGATGTGGATGGTGAGCTGGAAATGGAAGATGTTTCTGGACATCCGAAGGATGAAAGACCGTCGTCTATAAATGGTTCTTTTGAAATGGATCCACCACAGCAAGGGCCACATAGGATCATGGAACCAGCTTCAAATGCTTGCACCGACTTGCCCCCACTTCCAGAGGGTTCCCCACCTTTGCCTCTTGATTCTCCTCCTCCACCCCCTCCTTTGCCTCCCTCACCACCACCACCACCACCCCCACTGTCTCCATCACCACCACCGCCACCGCCGCCTCCCCCCTCACAGCCTCCACTTCCTCTACCACTATCAGGTTCTCAACATTTGTTGATTCCCCAGTCATCTAGACCAACCCAGCCTTCATTAGTAGCCCAACAGATGCTGCCACCTCAAACATCAATGCATTCTTCACCACAGTTGGCGTATCAACCTTCTGTACCTCATGAATACTGCAGCACTAGTGGCAACCAACTAGTCCAAATGCCTGGAAATGCTTCTCACGGGGGTGCTATTGATTCTTCCGTGAAAACTGAAATGTTTTCACAGCAGCAAGCTTGCTTTGCCCCAGCAGGAGTATGTGGTCCTCGAGAACCTTCTGGATATAGTTCAGCTAGGCAAGTAGAGCATGGACATGGTGACATTTTCATGAGTACACAAGTCTCTCAACCAAACCAACAATTTCAACAAGGTAACGCAGCTTTTGCTCCTAGACCTTTACCTCCAGGACCCCCACAAAATCCATCGAGTCACTTTTCCTATGCCAAGCCCCCAGTTCAGCAACATCCCCAGCATCCATACCGACCCCCATACCCTTTGCCACCTGGTCCTGATAATCAGAGACGATTTGTTGCCGATGAACAGCGGGGTGTCTGGATAAATGGTGGGAGGCCTCCACACCCAGGACCACCATTTGGCCATGAAGGTTATTTTCGCCCACCAGTCGAGAGGCCACCAGCAAATAATATGAGTTTTCAGCGTCCCGCTCCTAATAATGTACCCTCTGGAGCTCCAATATCAGGTCATAGTGCTTCTCAGATCTTGCCATGTAGGCCTGATATTTCAGCTGTTAATTGTTGGAGACCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1459

Amino Acids

158.1

Weight (kDa)

7.92

Isoelectric Point (pI)

63.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	21 - 104	5.6e-19	PWWP domain
CTK3	PF12243	859 - 978	1.9e-07	CTD kinase subunit gamma CTK3
CID	PF04818	861 - 985	1.6e-15	CID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	659, 3019
Acc36I	ACCTGC	2 cut(s)	1017, 1954
Acc65I	GGTACC	2 cut(s)	646, 2555
AccB1I	GGYRCC	2 cut(s)	646, 2555
AccB7I	CCANNNNNTGG	1 cut(s)	4199
AccBSI	CCGCTC	1 cut(s)	4271
AccI	GTMKAC	4 cut(s)	16, 552, 1286, 2484
AccII	CGCG	2 cut(s)	13, 21
AclWI	GGATC	8 cut(s)	140, 1150, 2425, 2548, 3041, 3371, 3384, 3410
AcoI	YGGCCR	1 cut(s)	4201
AcsI	RAATTY	1 cut(s)	2931
AcuI	CTGAAG	3 cut(s)	144, 564, 612
AcvI	CACGTG	1 cut(s)	1295
AcyI	GRCGYC	2 cut(s)	656, 3016
AdeI	CACNNNGTG	2 cut(s)	2549, 2945
AflII	CTTAAG	2 cut(s)	695, 1013
AflIII	ACRYGT	1 cut(s)	1294
AgeI	ACCGGT	1 cut(s)	3208
AhlI	ACTAGT	3 cut(s)	224, 3746, 3760
AjnI	CCWGG	8 cut(s)	1756, 2413, 2863, 3112, 3772, 4009, 4108, 4186
AjuI	GAANNNNNNNTTGG	6 cut(s)	966, 998, 1888, 1920, 3631, 3663
AleI	CACNNNNGTG	1 cut(s)	3792
AloI	GAACNNNNNNTCC	2 cut(s)	2682, 2714
Alw21I	GWGCWC	4 cut(s)	1640, 1836, 2878, 4297
Alw26I	GTCTC	8 cut(s)	931, 1791, 1923, 2983, 3540, 3952, 4120, 4360
Alw44I	GTGCAC	1 cut(s)	1832
AlwI	GGATC	8 cut(s)	140, 1150, 2425, 2548, 3041, 3371, 3384, 3410
AlwNI	CAGNNNCTG	1 cut(s)	3670
Ama87I	CYCGRG	1 cut(s)	3873
AoxI	GGCC	7 cut(s)	101, 1017, 3392, 4175, 4201, 4235, 4337
ApaLI	GTGCAC	1 cut(s)	1832
ApoI	RAATTY	1 cut(s)	2931
ArsI	GACNNNNNNTTYG	4 cut(s)	1014, 1046, 1732, 1764
AsiGI	ACCGGT	1 cut(s)	3208
Asp700I	GAANNNNTTC	4 cut(s)	1359, 2047, 3168, 3781
Asp718I	GGTACC	2 cut(s)	646, 2555
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	9 cut(s)	102, 2106, 2494, 2613, 3392, 3869, 4013, 4112, 4190
AsuC2I	CCSGG	2 cut(s)	1594, 2104
AsuII	TTCGAA	1 cut(s)	1277
AvaI	CYCGRG	1 cut(s)	3873
AvaII	GGWCC	7 cut(s)	2106, 2494, 2613, 3869, 4013, 4112, 4190
BaeGI	GKGCMC	2 cut(s)	1836, 2650
BalI	TGGCCA	1 cut(s)	4203
BamHI	GGATCC	1 cut(s)	3376
BanI	GGYRCC	2 cut(s)	646, 2555
BanII	GRGCYC	1 cut(s)	4297
BarI	GAAGNNNNNNTAC	2 cut(s)	1347, 1379
BauI	CACGAG	2 cut(s)	2753, 2877
BbrPI	CACGTG	1 cut(s)	1295
BbsI	GAAGAC	5 cut(s)	552, 618, 683, 1105, 1262
Bbv12I	GWGCWC	4 cut(s)	1640, 1836, 2878, 4297
BceAI	ACGGC	3 cut(s)	2103, 2855, 2927
BcgI	CGANNNNNNTGC	2 cut(s)	991, 1025
BciT130I	CCWGG	8 cut(s)	1758, 2415, 2865, 3114, 3774, 4011, 4110, 4188
BciVI	GTATCC	1 cut(s)	1330
BcnI	CCSGG	2 cut(s)	1594, 2104
BcoDI	GTCTC	8 cut(s)	931, 1791, 1923, 2983, 3540, 3952, 4120, 4360
BcuI	ACTAGT	3 cut(s)	224, 3746, 3760
BfmI	CTRYAG	5 cut(s)	204, 1767, 1947, 2296, 3739
BfrI	CTTAAG	2 cut(s)	695, 1013
BfuAI	ACCTGC	2 cut(s)	1017, 1954
BfuI	GTATCC	1 cut(s)	1330
BglI	GCCNNNNNGGC	1 cut(s)	4336
BglII	AGATCT	1 cut(s)	4323
BlpI	GCTNAGC	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	1237
Bme18I	GGWCC	7 cut(s)	2106, 2494, 2613, 3869, 4013, 4112, 4190
BmeT110I	CYCGRG	1 cut(s)	3873
BmgT120I	GGNCC	9 cut(s)	102, 2106, 2494, 2613, 3392, 3869, 4013, 4112, 4190
BmiI	GGNNCC	8 cut(s)	6, 648, 1449, 2557, 3378, 3411, 3457, 4015
BmrI	ACTGGG	4 cut(s)	1973, 2346, 3619, 4052
BmsI	GCATC	9 cut(s)	370, 1177, 2254, 2533, 2569, 3236, 3288, 3657, 4087
BmuI	ACTGGG	4 cut(s)	1973, 2346, 3619, 4052
BoxI	GACNNNNGTC	2 cut(s)	745, 3349
BpiI	GAAGAC	5 cut(s)	552, 618, 683, 1105, 1262
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpmI	CTGGAG	3 cut(s)	2729, 3993, 4311
Bpu10I	CCTNAGC	2 cut(s)	2016, 2367
Bpu1102I	GCTNAGC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	1277
BpuEI	CTTGAG	2 cut(s)	1680, 2942
BpuMI	CCSGG	2 cut(s)	1594, 2104
BsaAI	YACGTR	1 cut(s)	1295
BsaBI	GATNNNNATC	1 cut(s)	3121
BsaHI	GRCGYC	2 cut(s)	656, 3016
BsaI	GGTCTC	2 cut(s)	1791, 4360
BsaJI	CCNNGG	9 cut(s)	58, 78, 370, 642, 1756, 2559, 2616, 2837, 4186
BsaWI	WCCGGW	1 cut(s)	3208
BsaXI	ACNNNNNCTCC	4 cut(s)	453, 483, 1388, 1418
Bse118I	RCCGGY	2 cut(s)	3208, 4369
Bse1I	ACTGG	8 cut(s)	982, 1979, 2226, 2313, 2352, 3625, 4058, 4226
Bse3DI	GCAATG	3 cut(s)	2396, 3100, 3274
Bse8I	GATNNNNATC	1 cut(s)	3121
BseBI	CCWGG	8 cut(s)	1758, 2415, 2865, 3114, 3774, 4011, 4110, 4188
BseDI	CCNNGG	9 cut(s)	58, 78, 370, 642, 1756, 2559, 2616, 2837, 4186
BseJI	GATNNNNATC	1 cut(s)	3121
BseMI	GCAATG	3 cut(s)	2396, 3100, 3274
BseMII	CTCAG	8 cut(s)	44, 597, 1517, 1802, 2030, 2381, 2537, 4334
BseNI	ACTGG	8 cut(s)	982, 1979, 2226, 2313, 2352, 3625, 4058, 4226
BseRI	GAGGAG	4 cut(s)	1562, 1565, 3471, 3474
BseSI	GKGCMC	2 cut(s)	1836, 2650
BseYI	CCCAGC	4 cut(s)	1731, 3642, 3853, 4074
Bsh1236I	CGCG	2 cut(s)	13, 21
BshFI	GGCC	7 cut(s)	103, 1019, 3394, 4177, 4203, 4237, 4339
BshNI	GGYRCC	2 cut(s)	646, 2555
BshTI	ACCGGT	1 cut(s)	3208
BsiHKAI	GWGCWC	4 cut(s)	1640, 1836, 2878, 4297
BsiHKCI	CYCGRG	1 cut(s)	3873
BsiSI	CCGG	4 cut(s)	1594, 2104, 3209, 4370
BslFI	GGGAC	4 cut(s)	125, 753, 1738, 4251
BsmAI	GTCTC	8 cut(s)	931, 1791, 1923, 2983, 3540, 3952, 4120, 4360
BsmBI	CGTCTC	1 cut(s)	4120
BsmFI	GGGAC	4 cut(s)	125, 753, 1738, 4251
BsmI	GAATGC	5 cut(s)	218, 485, 1114, 1687, 3691
BsnI	GGCC	7 cut(s)	103, 1019, 3394, 4177, 4203, 4237, 4339
Bso31I	GGTCTC	2 cut(s)	1791, 4360
BsoBI	CYCGRG	1 cut(s)	3873
Bsp119I	TTCGAA	1 cut(s)	1277
Bsp1286I	GDGCHC	5 cut(s)	1640, 1836, 2650, 2878, 4297
Bsp1720I	GCTNAGC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	370
BspANI	GGCC	7 cut(s)	103, 1019, 3394, 4177, 4203, 4237, 4339
BspCNI	CTCAG	8 cut(s)	45, 598, 1516, 1801, 2029, 2380, 2538, 4333
BspFNI	CGCG	2 cut(s)	13, 21
BspHI	TCATGA	3 cut(s)	889, 3730, 3933
BspLI	GGNNCC	8 cut(s)	6, 648, 1449, 2557, 3378, 3411, 3457, 4015
BspMAI	CTGCAG	2 cut(s)	1951, 3743
BspMI	ACCTGC	2 cut(s)	1017, 1954
BspPI	GGATC	8 cut(s)	140, 1150, 2425, 2548, 3041, 3371, 3384, 3410
BspQI	GCTCTTC	1 cut(s)	1594
BspT104I	TTCGAA	1 cut(s)	1277
BspT107I	GGYRCC	2 cut(s)	646, 2555
BspTI	CTTAAG	2 cut(s)	695, 1013
BspTNI	GGTCTC	2 cut(s)	1791, 4360
BsrBI	CCGCTC	1 cut(s)	4271
BsrDI	GCAATG	3 cut(s)	2396, 3100, 3274
BsrFI	RCCGGY	2 cut(s)	3208, 4369
BsrI	ACTGG	8 cut(s)	982, 1979, 2226, 2313, 2352, 3625, 4058, 4226
BssAI	RCCGGY	2 cut(s)	3208, 4369
BssECI	CCNNGG	9 cut(s)	58, 78, 370, 642, 1756, 2559, 2616, 2837, 4186
BssNI	GRCGYC	2 cut(s)	656, 3016
BssSI	CACGAG	2 cut(s)	2753, 2877
BssT1I	CCWWGG	4 cut(s)	78, 370, 642, 2616
Bst2BI	CACGAG	2 cut(s)	2753, 2877
Bst2UI	CCWGG	8 cut(s)	1758, 2415, 2865, 3114, 3774, 4011, 4110, 4188
Bst6I	CTCTTC	6 cut(s)	177, 788, 1035, 1594, 1775, 2503
BstACI	GRCGYC	2 cut(s)	656, 3016
BstAFI	CTTAAG	2 cut(s)	695, 1013
BstAPI	GCANNNNNTGC	2 cut(s)	2570, 3989
BstBAI	YACGTR	1 cut(s)	1295
BstBI	TTCGAA	1 cut(s)	1277
BstC8I	GCNNGC	9 cut(s)	105, 119, 253, 1836, 2403, 3036, 3427, 3840, 3844
BstDSI	CCRYGG	2 cut(s)	370, 2837
BstEII	GGTNACC	1 cut(s)	89
BstENI	CCTNNNNNAGG	2 cut(s)	77, 1013
BstFNI	CGCG	2 cut(s)	13, 21
BstHHI	GCGC	1 cut(s)	49
BstMAI	GTCTC	8 cut(s)	931, 1791, 1923, 2983, 3540, 3952, 4120, 4360
BstNI	CCWGG	8 cut(s)	1758, 2415, 2865, 3114, 3774, 4011, 4110, 4188
BstNSI	RCATGY	3 cut(s)	1184, 2349, 3249
BstPAI	GACNNNNGTC	2 cut(s)	745, 3349
BstPI	GGTNACC	1 cut(s)	89
BstSFI	CTRYAG	5 cut(s)	204, 1767, 1947, 2296, 3739
BstSLI	GKGCMC	2 cut(s)	1836, 2650
BstUI	CGCG	2 cut(s)	13, 21
BstV2I	GAAGAC	5 cut(s)	552, 618, 683, 1105, 1262
BstX2I	RGATCY	3 cut(s)	2417, 3376, 4323
BstXI	CCANNNNNNTGG	3 cut(s)	2359, 3230, 3773
BstYI	RGATCY	3 cut(s)	2417, 3376, 4323
BsuI	GTATCC	1 cut(s)	1330
BsuRI	GGCC	7 cut(s)	103, 1019, 3394, 4177, 4203, 4237, 4339
BtgI	CCRYGG	2 cut(s)	370, 2837
BtgZI	GCGATG	1 cut(s)	1406
BtsI	GCAGTG	1 cut(s)	2398
BtsIMutI	CAGTG	5 cut(s)	2219, 2398, 2543, 2900, 3530
BveI	ACCTGC	2 cut(s)	1017, 1954
Cac8I	GCNNGC	9 cut(s)	105, 119, 253, 1836, 2403, 3036, 3427, 3840, 3844
CaiI	CAGNNNCTG	1 cut(s)	3670
CciI	TCATGA	3 cut(s)	889, 3730, 3933
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	2 cut(s)	3208, 4369
Cfr13I	GGNCC	9 cut(s)	102, 2106, 2494, 2613, 3392, 3869, 4013, 4112, 4190
CseI	GACGC	3 cut(s)	27, 1367, 4253
CsiI	ACCWGGT	2 cut(s)	2863, 4108
CspAI	ACCGGT	1 cut(s)	3208
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
DraIII	CACNNNGTG	2 cut(s)	2549, 2945
EaeI	YGGCCR	1 cut(s)	4201
Eam1104I	CTCTTC	6 cut(s)	177, 788, 1035, 1594, 1775, 2503
EarI	CTCTTC	6 cut(s)	177, 788, 1035, 1594, 1775, 2503
Ecl136II	GAGCTC	1 cut(s)	4295
Eco130I	CCWWGG	4 cut(s)	78, 370, 642, 2616
Eco147I	AGGCCT	2 cut(s)	4177, 4339
Eco24I	GRGCYC	1 cut(s)	4297
Eco31I	GGTCTC	2 cut(s)	1791, 4360
Eco47I	GGWCC	7 cut(s)	2106, 2494, 2613, 3869, 4013, 4112, 4190
Eco53kI	GAGCTC	1 cut(s)	4295
Eco57I	CTGAAG	3 cut(s)	144, 564, 612
Eco72I	CACGTG	1 cut(s)	1295
Eco88I	CYCGRG	1 cut(s)	3873
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	4295
EcoNI	CCTNNNNNAGG	2 cut(s)	77, 1013
EcoO109I	RGGNCCY	2 cut(s)	2494, 4013
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	8 cut(s)	1756, 2413, 2863, 3112, 3772, 4009, 4108, 4186
EcoT14I	CCWWGG	4 cut(s)	78, 370, 642, 2616
EcoT22I	ATGCAT	3 cut(s)	3136, 3229, 3693
EcoT38I	GRGCYC	1 cut(s)	4297
ErhI	CCWWGG	4 cut(s)	78, 370, 642, 2616
Esp3I	CGTCTC	1 cut(s)	4120
FalI	AAGNNNNNCTT	6 cut(s)	948, 980, 996, 1028, 2934, 2966
FaqI	GGGAC	4 cut(s)	125, 753, 1738, 4251
FauI	CCCGC	5 cut(s)	112, 1200, 2791, 4143, 4276
FauNDI	CATATG	1 cut(s)	2809
FblI	GTMKAC	4 cut(s)	16, 552, 1286, 2484
FriOI	GRGCYC	1 cut(s)	4297
GlaI	GCGC	1 cut(s)	48
GsaI	CCCAGC	4 cut(s)	1735, 3646, 3857, 4078
GsuI	CTGGAG	3 cut(s)	2729, 3993, 4311
HaeIII	GGCC	7 cut(s)	103, 1019, 3394, 4177, 4203, 4237, 4339
HapII	CCGG	4 cut(s)	1594, 2104, 3209, 4370
HgaI	GACGC	3 cut(s)	27, 1367, 4253
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	2 cut(s)	656, 3016
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	2032, 2740
HindII	GTYRAC	2 cut(s)	2032, 2740
HindIII	AAGCTT	1 cut(s)	3840
HpaII	CCGG	4 cut(s)	1594, 2104, 3209, 4370
Hpy99I	CGWCG	7 cut(s)	13, 1383, 1386, 1389, 2892, 2958, 3352
HpyCH4IV	ACGT	5 cut(s)	549, 656, 839, 1294, 3016
HpySE526I	ACGT	5 cut(s)	549, 656, 839, 1294, 3016
Hsp92I	GRCGYC	2 cut(s)	656, 3016
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	2 cut(s)	650, 2559
LguI	GCTCTTC	1 cut(s)	1594
LweI	GCATC	9 cut(s)	370, 1177, 2254, 2533, 2569, 3236, 3288, 3657, 4087
MabI	ACCWGGT	2 cut(s)	2863, 4108
MaeII	ACGT	5 cut(s)	549, 656, 839, 1294, 3016
MaeIII	GTNAC	8 cut(s)	89, 522, 761, 2154, 3253, 3923, 3977, 4034
MbiI	CCGCTC	1 cut(s)	4271
MflI	RGATCY	3 cut(s)	2417, 3376, 4323
MhlI	GDGCHC	5 cut(s)	1640, 1836, 2650, 2878, 4297
MlsI	TGGCCA	1 cut(s)	4203
MluNI	TGGCCA	1 cut(s)	4203
MlyI	GAGTC	5 cut(s)	2108, 2753, 2985, 3245, 4042
MmeI	TCCRAC	5 cut(s)	486, 1890, 2158, 2840, 4343
Mox20I	TGGCCA	1 cut(s)	4203
Mph1103I	ATGCAT	3 cut(s)	3136, 3229, 3693
MroXI	GAANNNNTTC	4 cut(s)	1359, 2047, 3168, 3781
MscI	TGGCCA	1 cut(s)	4203
MslI	CAYNNNNRTG	6 cut(s)	375, 705, 1185, 3792, 3918, 3932
Msp20I	TGGCCA	1 cut(s)	4203
MspA1I	CMGCKG	4 cut(s)	52, 2567, 4150, 4352
MspCI	CTTAAG	2 cut(s)	695, 1013
MspI	CCGG	4 cut(s)	1594, 2104, 3209, 4370
Mva1269I	GAATGC	5 cut(s)	218, 485, 1114, 1687, 3691
MvaI	CCWGG	8 cut(s)	1758, 2415, 2865, 3114, 3774, 4011, 4110, 4188
MvnI	CGCG	2 cut(s)	13, 21
NciI	CCSGG	2 cut(s)	1594, 2104
NcoI	CCATGG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	2809
NlaIV	GGNNCC	8 cut(s)	6, 648, 1449, 2557, 3378, 3411, 3457, 4015
NmeAIII	GCCGAG	2 cut(s)	39, 1183
NmuCI	GTSAC	4 cut(s)	89, 761, 3923, 4034
NsiI	ATGCAT	3 cut(s)	3136, 3229, 3693
NspI	RCATGY	3 cut(s)	1184, 2349, 3249
NspV	TTCGAA	1 cut(s)	1277
OliI	CACNNNNGTG	1 cut(s)	3792
PaeR7I	CTCGAG	1 cut(s)	3873
PagI	TCATGA	3 cut(s)	889, 3730, 3933
PceI	AGGCCT	2 cut(s)	4177, 4339
PciSI	GCTCTTC	1 cut(s)	1594
PcsI	WCGNNNNNNNCGW	3 cut(s)	2884, 3022, 3031
PctI	GAATGC	5 cut(s)	218, 485, 1114, 1687, 3691
PdmI	GAANNNNTTC	4 cut(s)	1359, 2047, 3168, 3781
PflFI	GACNNNGTC	1 cut(s)	1744
PflMI	CCANNNNNTGG	1 cut(s)	4199
PfoI	TCCNGGA	4 cut(s)	1592, 2102, 2413, 4009
PinAI	ACCGGT	1 cut(s)	3208
PleI	GAGTC	5 cut(s)	2108, 2753, 2984, 3244, 4041
PmaCI	CACGTG	1 cut(s)	1295
PmlI	CACGTG	1 cut(s)	1295
PpsI	GAGTC	5 cut(s)	2108, 2753, 2984, 3244, 4041
Ppu21I	YACGTR	1 cut(s)	1295
PpuMI	RGGWCCY	2 cut(s)	2494, 4013
PshAI	GACNNNNGTC	2 cut(s)	745, 3349
Psp124BI	GAGCTC	1 cut(s)	4297
Psp5II	RGGWCCY	2 cut(s)	2494, 4013
Psp6I	CCWGG	8 cut(s)	1756, 2413, 2863, 3112, 3772, 4009, 4108, 4186
PspCI	CACGTG	1 cut(s)	1295
PspEI	GGTNACC	1 cut(s)	89
PspFI	CCCAGC	4 cut(s)	1731, 3642, 3853, 4074
PspGI	CCWGG	8 cut(s)	1756, 2413, 2863, 3112, 3772, 4009, 4108, 4186
PspN4I	GGNNCC	8 cut(s)	6, 648, 1449, 2557, 3378, 3411, 3457, 4015
PspPI	GGNCC	9 cut(s)	102, 2106, 2494, 2613, 3392, 3869, 4013, 4112, 4190
PspPPI	RGGWCCY	2 cut(s)	2494, 4013
PstI	CTGCAG	2 cut(s)	1951, 3743
PstNI	CAGNNNCTG	1 cut(s)	3670
PsuI	RGATCY	3 cut(s)	2417, 3376, 4323
PsyI	GACNNNGTC	1 cut(s)	1744
PvuII	CAGCTG	3 cut(s)	52, 2567, 4352
RseI	CAYNNNNRTG	6 cut(s)	375, 705, 1185, 3792, 3918, 3932
SacI	GAGCTC	1 cut(s)	4297
SapI	GCTCTTC	1 cut(s)	1594
Sau96I	GGNCC	9 cut(s)	102, 2106, 2494, 2613, 3392, 3869, 4013, 4112, 4190
ScaI	AGTACT	1 cut(s)	1237
SchI	GAGTC	5 cut(s)	2108, 2753, 2985, 3245, 4042
SduI	GDGCHC	5 cut(s)	1640, 1836, 2650, 2878, 4297
SexAI	ACCWGGT	2 cut(s)	2863, 4108
SfaNI	GCATC	9 cut(s)	370, 1177, 2254, 2533, 2569, 3236, 3288, 3657, 4087
SfcI	CTRYAG	5 cut(s)	204, 1767, 1947, 2296, 3739
Sfr274I	CTCGAG	1 cut(s)	3873
SfuI	TTCGAA	1 cut(s)	1277
SinI	GGWCC	7 cut(s)	2106, 2494, 2613, 3869, 4013, 4112, 4190
SlaI	CTCGAG	1 cut(s)	3873
SmiMI	CAYNNNNRTG	6 cut(s)	375, 705, 1185, 3792, 3918, 3932
SmlI	CTYRAG	5 cut(s)	695, 1013, 1695, 2921, 3873
SmoI	CTYRAG	5 cut(s)	695, 1013, 1695, 2921, 3873
SpeI	ACTAGT	3 cut(s)	224, 3746, 3760
SseBI	AGGCCT	2 cut(s)	4177, 4339
SspI	AATATT	2 cut(s)	1618, 1651
SstI	GAGCTC	1 cut(s)	4297
StuI	AGGCCT	2 cut(s)	4177, 4339
StyI	CCWWGG	4 cut(s)	78, 370, 642, 2616
TaiI	ACGT	5 cut(s)	552, 659, 842, 1297, 3019
TaqII	GACCGA	2 cut(s)	909, 1464
TatI	WGTACW	6 cut(s)	817, 1235, 1679, 1712, 2145, 3938
TauI	GCSGC	2 cut(s)	3274, 3562
TscAI	CASTG	5 cut(s)	2226, 2398, 2550, 2900, 3537
TseFI	GTSAC	4 cut(s)	89, 761, 3923, 4034
Tsp45I	GTSAC	4 cut(s)	89, 761, 3923, 4034
TspGWI	ACGGA	1 cut(s)	3799
TspRI	CASTG	5 cut(s)	2226, 2398, 2550, 2900, 3537
Tth111I	GACNNNGTC	1 cut(s)	1744
Van91I	CCANNNNNTGG	1 cut(s)	4199
Vha464I	CTTAAG	2 cut(s)	695, 1013
VneI	GTGCAC	1 cut(s)	1832
VpaK11BI	GGWCC	7 cut(s)	2106, 2494, 2613, 3869, 4013, 4112, 4190
XagI	CCTNNNNNAGG	2 cut(s)	77, 1013
XapI	RAATTY	1 cut(s)	2931
XbaI	TCTAGA	1 cut(s)	3632
XceI	RCATGY	3 cut(s)	1184, 2349, 3249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2167
XhoI	CTCGAG	1 cut(s)	3873
XmiI	GTMKAC	4 cut(s)	16, 552, 1286, 2484
XmnI	GAANNNNTTC	4 cut(s)	1359, 2047, 3168, 3781
ZraI	GACGTC	2 cut(s)	657, 3017
ZrmI	AGTACT	1 cut(s)	1237
Zsp2I	ATGCAT	3 cut(s)	3136, 3229, 3693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.