Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8305917.1

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 907

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8305917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ccagctgaagaatgggtctctgtcacctagcaaacctgcagtagatgagaagaggtctcaaaagcaaactcaaactgatgaaaagaggcttgaaaaggcagtgcacatctaccggagtccagcaaaattagaacctgaccagcaagtgtccaaagagtcaaaaccaaccttgacttctcctaagaagtctcctatgttggctacagctactaaacctgcagttgaacaacaaaaagccacaaaagctccggttaaaggctctaatactgcaactcagaaaaagggtcaggctgcatctggcaacagttctagaacagtttctaatagtgtggtttcttctcaaaaacctaaacctactgcaagaccaatatcccggatcaatgactccgctattttgcaggaaaataccatagagtacgatttgttaccggcggaaagaatggaagttggaaaagaagataaaagtgccttattggttgattctaagactctggaatcttcttcgtctatgaagcatctaattgcagttgcacaagcaaaaaggaaacaaacgcagtcgcacaactacttctttgaaatttccagttctgcttttttagctagcacagatgggacgtgccccagtcctttggcagttcagggtctttatcccattagcaacagtgcattgcaggcagatattccaggacctattcaacccaccacaaacatagcttctccatctactcatagtcgcccttctgcattacaaaatcaactggacatcgaggacatttcagaaagaagagttagttctgggcatcaaacagctggaggatcact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

274

Amino Acids

29.38

Weight (kDa)

9.59

Isoelectric Point (pI)

63.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	44, 224
AciI	CCGC	2 cut(s)	388, 432
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	4 cut(s)	93, 225, 576, 696
AjiI	CACGTC	1 cut(s)	616
AjnI	CCWGG	1 cut(s)	683
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	6 cut(s)	5, 207, 246, 600, 714, 810
AluI	AGCT	6 cut(s)	5, 207, 246, 600, 714, 810
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	3 cut(s)	22, 61, 193
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	384
ApaLI	GTGCAC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	687
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	687
BaeGI	GKGCMC	2 cut(s)	106, 621
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	603, 728
BciT130I	CCWGG	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	22, 61, 193
BfaI	CTAG	3 cut(s)	28, 310, 601
BfmI	CTRYAG	3 cut(s)	37, 202, 217
BfuAI	ACCTGC	2 cut(s)	44, 224
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	374, 685
Bme18I	GGWCC	1 cut(s)	687
BmgBI	CACGTC	1 cut(s)	616
BmgT120I	GGNCC	1 cut(s)	687
BmrFI	CCNGG	2 cut(s)	374, 685
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	3 cut(s)	303, 524, 809
BmtI	GCTAGC	1 cut(s)	604
BmuI	ACTGGG	1 cut(s)	616
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	2 cut(s)	22, 61
BsaWI	WCCGGW	2 cut(s)	112, 248
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	583, 622, 763
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	685
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	583, 622, 763
BseSI	GKGCMC	2 cut(s)	106, 621
BseXI	GCAGC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	4 cut(s)	113, 249, 374, 429
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	3 cut(s)	22, 61, 193
BsmFI	GGGAC	1 cut(s)	626
Bso31I	GGTCTC	2 cut(s)	22, 61
Bsp1286I	GDGCHC	2 cut(s)	106, 621
Bsp143I	GATC	2 cut(s)	376, 816
BspACI	CCGC	2 cut(s)	388, 432
BspCNI	CTCAG	1 cut(s)	287
BspMAI	CTGCAG	2 cut(s)	41, 221
BspMI	ACCTGC	2 cut(s)	44, 224
BspOI	GCTAGC	1 cut(s)	604
BspPI	GGATC	1 cut(s)	384
BspTNI	GGTCTC	2 cut(s)	22, 61
BsrDI	GCAATG	1 cut(s)	666
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	3 cut(s)	583, 622, 763
BssAI	RCCGGY	1 cut(s)	428
BssMI	GATC	2 cut(s)	376, 816
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	3 cut(s)	306, 317, 663
Bst6I	CTCTTC	2 cut(s)	45, 779
BstC8I	GCNNGC	2 cut(s)	602, 673
BstDEI	CTNAG	3 cut(s)	181, 274, 484
BstKTI	GATC	2 cut(s)	379, 819
BstMAI	GTCTC	3 cut(s)	22, 61, 193
BstMBI	GATC	2 cut(s)	376, 816
BstMWI	GCNNNNNNNGC	3 cut(s)	243, 597, 672
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	372, 683
BstSFI	CTRYAG	3 cut(s)	37, 202, 217
BstSLI	GKGCMC	2 cut(s)	106, 621
BstV1I	GCAGC	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	629
BtrI	CACGTC	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 668
BveI	ACCTGC	2 cut(s)	44, 224
Cac8I	GCNNGC	2 cut(s)	602, 673
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	416
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	181, 274, 484
DpnI	GATC	2 cut(s)	378, 818
DpnII	GATC	2 cut(s)	376, 816
Eam1104I	CTCTTC	2 cut(s)	45, 779
EarI	CTCTTC	2 cut(s)	45, 779
EciI	GGCGGA	1 cut(s)	447
Eco31I	GGTCTC	2 cut(s)	22, 61
Eco47I	GGWCC	1 cut(s)	687
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	683
FaiI	YATR	5 cut(s)	195, 411, 510, 711, 730
FaqI	GGGAC	1 cut(s)	626
Fnu4HI	GCNGC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	3 cut(s)	28, 310, 601
GluI	GCNGC	1 cut(s)	292
HapII	CCGG	4 cut(s)	113, 249, 374, 429
HinfI	GANTC	6 cut(s)	116, 156, 384, 480, 488, 495
HpaII	CCGG	4 cut(s)	113, 249, 374, 429
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	277, 779
Hpy188III	TCNNGA	2 cut(s)	310, 492
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	3 cut(s)	306, 317, 663
HpyCH4IV	ACGT	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	3 cut(s)	243, 597, 672
HpyF3I	CTNAG	3 cut(s)	181, 274, 484
HpySE526I	ACGT	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	376, 816
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	3 cut(s)	303, 524, 809
MaeI	CTAG	3 cut(s)	28, 310, 601
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	22, 424
MalI	GATC	2 cut(s)	378, 818
MboI	GATC	2 cut(s)	376, 816
MboII	GAAGA	7 cut(s)	20, 62, 328, 468, 490, 493, 796
MhlI	GDGCHC	2 cut(s)	106, 621
MluCI	AATT	3 cut(s)	126, 520, 577
MlyI	GAGTC	4 cut(s)	125, 165, 378, 482
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	4 cut(s)	46, 79, 761, 807
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	253
MspA1I	CMGCKG	2 cut(s)	5, 810
MspI	CCGG	4 cut(s)	113, 249, 374, 429
MspR9I	CCNGG	2 cut(s)	374, 685
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	3 cut(s)	243, 597, 672
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	2 cut(s)	376, 816
NheI	GCTAGC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	480, 495
PfoI	TCCNGGA	2 cut(s)	372, 683
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	4 cut(s)	124, 164, 378, 482
PpsI	GAGTC	4 cut(s)	124, 164, 378, 482
PpuMI	RGGWCCY	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspPI	GGNCC	1 cut(s)	687
PspPPI	RGGWCCY	1 cut(s)	687
PstI	CTGCAG	2 cut(s)	41, 221
PvuII	CAGCTG	2 cut(s)	5, 810
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	2 cut(s)	376, 816
Sau96I	GGNCC	1 cut(s)	687
SchI	GAGTC	4 cut(s)	125, 165, 378, 482
ScrFI	CCNGG	2 cut(s)	374, 685
SduI	GDGCHC	2 cut(s)	106, 621
SfaNI	GCATC	3 cut(s)	303, 524, 809
SfcI	CTRYAG	3 cut(s)	37, 202, 217
SinI	GGWCC	1 cut(s)	687
Sse9I	AATT	3 cut(s)	126, 520, 577
SsiI	CCGC	2 cut(s)	388, 432
SspMI	CTAG	3 cut(s)	28, 310, 601
StyD4I	CCNGG	2 cut(s)	372, 683
TaaI	ACNGT	3 cut(s)	306, 317, 663
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	766
TasI	AATT	3 cut(s)	126, 520, 577
TfiI	GAWTC	2 cut(s)	480, 495
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TscAI	CASTG	2 cut(s)	106, 668
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	291
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	94, 525
TspRI	CASTG	2 cut(s)	106, 668
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	1 cut(s)	577
XbaI	TCTAGA	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	3 cut(s)	28, 310, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.