Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

282292 .. 291096

Gene Structure 8805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00460.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4476 bp

ATGGCTCCGGGGCGTAGACGCGGAGCGAGCAAGGCCAAGGATAAGAGCAAGTTGGGTCTCGGCGATCTTGTCCTTGCTAAGGTCAAGGGCTTCCCCTATTGGCCCGCCAAGATTAGCAGGCCTGAAGATTGGAAGAAGGTCCCTGATCGAAAGAAATATTTTGTCCAATTTTTTGGAACGGAAGAGATAGCTTTTGTTGCCCCTGCAGATATTCAGGCATTCACTAGTGAGGCAAAAAACAAATTATTAGGTCGTTGTCATGCGAAAACAAAGTATTTTTCCCAAGCTGTGAAGGACATATGTCAGGCATTTGACGAGTTACACAAAAAGAGGTCAAATGATTTGAGGGATGATACTGATAGATCAGACACCGGATGTGAGGCTCCATCTGGTGATGGCATAGAAGATAATGGGATTGATGTTGACTTAAAGGATGGGGAGGGTGTACGGGATTCCAATGGACAAACAGACAAGGAAGAAGGCATAGGTGATATTGGCCCTAAGCTGGAATGCTGTTCACAGGCACGAGGTGAAAATGATGATGACGATGTAAACCCATCTACCTCATGTGGAGCAAATGAGAGTTCTCAAGTTTTTTCTCCTGAGAGAAAAAATAAAATGGCTGCAGTTCCACCGCCTAAAAAAGAGGCATTAAAGAAATCTAATCCAGAGAATTCTTCTCATCCCAAGGAAGAAGTTTCTGGTAGTAAGCGTGAAGAAGATGATCGCACAAAGAAACGCAGTGATGGACGGAGGTCTGTAGCAAATGGCCACAAGATGACGAAGATGGTTACTGGATCAAAGAGGAAGCATGGTGGCACAGTTGAGGAACAAAAAAATCGTTCTGCTGTTACATCGTTGAAGGATGATAACTCAATTGGTCGTGTTGATCACCCACAATCTGGTGATCGATTAAAAGATGGAACAAAAGGCAAACTTGGCTCTGGTGGCAGGAAGAGGGAGTTCTCCCCAGATGCTCTAAAATCAGATACTAGTGGTAAGGTTGGGAAAAAGACAAAAGACCTGGTTAAAGCCAACAAGCAAGTCAAGTTGCCAGATAATGTGATAGATGATTCTGAGGAGCAGGCCAAAGACAAACATTCGGGAAGGACAAAGGGGGTTCAACCAGGGCTTGGAAAGCCTAATTTGGGAACAAATGATCCTTCACGTTGTTCCAAAAAGTCAAAACATGTAGATGCTGGGGATAGTGCTTCAAAGGGTTCGGTCTCTAAAACTACGAAGAGTCTATCTCCTAGTTCTGATGTTGATGACAAGACATTAAAAATAATGGATTCAAATTTGTCAACTTCACATGTGAAAAGAGAGAACCATCTAGTTTCCATGTCCAAAAATGTTGTTGGTGGACCCAACGGTCCTGGTGATGAAGCCGCGCTACCCCTAACAAAGAGTCGCCGTCGAGCATTGGAGGCTATGCCTGATTCTGATACTTTGGTTAGTGACGATAAGAAGGAAGAGGATCCCGCTCTGAAGAATGATATATCATGCTCTACTGACGTTAGAGTTCCTACACAGAGGAAGCGGAGAGCTGTGTGCCTCTATGATGAGGAGGAGGAGGAGGAAAAACCCAAAACACCAGTTCATGGAGGATCTTCCCGAAATTTTAAAGCGTCTTCATATTCTGCAGACGCTGTAAAGAGCAATAATGAAAACCATGAGAGGTCAAATACTGCTCAACAGAGTACCAAATGTCCTACTGAATTTCAGATGAGTTGCACAAAGGAATCATCTTCCCAGTTATATGATGGTTTTCCATCACCTAGAAAACCTCAAGCGGATGAGGAGAGGCCGGAAAAGAAACCTCAAATTGAGAAAAAGAGTCTTGAAAAGGTGGTGCATGTGTATCACAGTCCAAAAAAATCAGAACCTGGGCATTTGCTGTCCAAGGAGGAAAAACCAACCTTGATTTCACCTAAGAAGTCTCCCCAGTTGGTTGCAACCACTAAACCAGTTGTGGAACAGCAGAAACCCGCAAAATCTTTGGTTAAAATCTCTAGTACTGGTACTCAAAAGAAGGCTCAGGCTGTGTCTAGCAAGGGTTCAGGTTTATTGTCTAACAGTTCGGTTTTTTCTCATAACCAGGCAAGAAACAAGTCTGCACCTTCTGGAGAAAAGTCTAAACCTACTCCACGATCATTCCCTCAGATCAGCGACTCTGCTATTTTAACAGAAAATGAAGCCGAGTACATTTCATTATCTGGTGAAAGAATGGAAGTTGGCAGAGATGATAAAATTGGCATATCCATGGATTCTAGAACTCCGGAATCATCTCAGTCTATGAGGCATCTTATTGCAGTTGCACAAGCCAAAAGGAAACAAGCTCAGTCGCAAAATTTTTTCCTTGGATTTTCCAGTTCCACTCTTGTGTCTCACTCAGATATGCAAGGGAGGAGCCCCAGCCCTTCTGCAGTTCAGGGTTTTTTGTCCATTTCTAGCACTGCATTGCAGGCAGATATCTCGGGGTCCAATCAACTCACAAATGTAGCTTCCCCAGTTACTCATGGTCGACAATATGTATCACAAATTCAACTTGATTTGGAGGAAATCTCAGAAAGAAGAGTTAGCTCTGGGCATCGAACTGCTGGAGGATCACTTAGTGGTGGTACCGAGGCAGCTGTTGCTCGTGATGCTTTTGAGGGAATGATAGAGACTTTGTCTAGGACTAAAGAAAGTATTAGTCGTGCAACTCGTCTTGCCATTGATTGTGCCAAGTATGGTATTGCCAATGAGGTTGTGGAACTACTAATCCGGAAGTTGGAGAGTGAGCCTAGTTTCCATCGTAAGGTCGATCTTTTCTTTCTTGTGGATTCCATCACACAAATCTCGCATAATCAAAAAGGCATTGCGGGAGCTTCATATGTTCCAACGGTTCAAGCAGCATTGCCACGTCTTCTCGGTGCTGCCGCTCCACCTGGTTCTGGTGCTCGTGATAATCGTCGTCAATGTCTTAAGGTTTTACGGCTGTGGATTGAGAGAAAAATCTTTCCTGAGTCTGTTCTTCGTCGTTACATGGATGACATTGGAGTTTCAAACGATGATTCAATTGCTGGTTTCTCCTTTAGACGTCCATCTCGAGCTGAGCGTGCTATAGATGACCCAATCAGAGAAATGGAAGGAATGTTTGTGGATGAGTATGGCAGTAACGCTACATTTCAGCTGCCTGGATTTTTGTCCTCTCATGCATTTGAAGATGATGAAGAAGAAGAAGAACTTCCTAGCTGTTCATATAAGGAGGCTAGCCATTCCTCACCAATGGAAACTACTTATGCTTCTGGGGAGTCAGAAACATGTGCGGTGACTCCTAATGATAGGCCAGAAACATGTGCGGTGACGCCTAATGATAGGCGACACTGTATCTTGGAGGATGTAGATGGTGAACTTGAAATGGAGGATGTGTCTGGACACCCAAAGGATGAAAGACCCTTGTTCAGTAATGGTTCTTTTGAATTGGATCCACAACAGCAGGGATCAGATAGGGTCATGGAACCGGCTTCAATTGCTTGCACTGATTTGCCCCCTTTTCCAGAGGGTTCTCCACCATTGCCTCTTGATTCTCCTCCTGCAACCCCACCTTTGCCTCCCTCACCCCCACCCCCACCACCTCCACTTCCGTTATCTCTTTCCCCACCACCACCGCCACCGCCTATACCATCACAGCCACCTCCTCCCCCACCATCTTCTGGTCATCAACCATTATTGATTCCTCAGTCATCTGTGCCAACTCAGGCTTCTTTGCTATCCCAACAGATGCTGCCTCTGCAATCATCAATGCATCCTTCACCGCTGGTGGCATATCAACCTCCTATGCCTCATGAATACTGCAGCACGAGTGGTAACCAGCATGTCCAAATTGCTGGAAATGCTCCTCATGTTGGCCCTATTGATGCGACTGCCAAGAGCGAGATGTTTCCGCAGCAGCAAGCTTGCTTTGTTCCTGCAGGAGTATGTGGTCCTCGAGAACCTTCTGGATTTAATTCGACTAGGCCGCTAGAACATGGACATAATGACATGTTTCAAAGTGCACAAGTCTCTCAAGCAAGCCAACAATTTCAACAAGTTATTACACCTTTTCCTCAAAGGCCTTTACCTCCTGCCCCACCACAAAATCCCTCAAGTCATTTCTCCTATACTAAGCAACATCCTCATCAACATCCTCAACAACCATACCACGGTCCATACTCTTTGCCTCCCCCACCTGATAATCAAAGACGATTCGTTGCCGATGAACAACGAGGCGTTTGGATGAATGGAGGAAGACCCCCACATCCGGGACCACCATTTGGCCATGAAGGTTATTTTCGGCCACCGCCTGATAGGCCGCAACCTAATAATATGGCTTTTCAGCGTTCTGCCCCCAATAATGTTCCAACTGGAGCTCCAATATCAGGTCATAGTGCTGCCCAGATCTTGCCATGTAGACCAGACATACCTACTGTTAATTGTTGGAGACCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1492

Amino Acids

162.31

Weight (kDa)

7.74

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1371
AatII	GACGTC	1 cut(s)	3085
Acc65I	GGTACC	1 cut(s)	2621
AccB1I	GGYRCC	1 cut(s)	2621
AccB7I	CCANNNNNTGG	5 cut(s)	902, 1133, 1601, 3698, 4298
AccBSI	CCGCTC	2 cut(s)	1484, 2924
AccI	GTMKAC	3 cut(s)	16, 2524, 4435
AccII	CGCG	2 cut(s)	21, 1391
AccIII	TCCGGA	2 cut(s)	2278, 2766
AclWI	GGATC	9 cut(s)	805, 1154, 1472, 1485, 1615, 2614, 3464, 3477, 3493
AcoI	YGGCCR	3 cut(s)	769, 4300, 4319
AcsI	RAATTY	6 cut(s)	673, 1297, 1618, 1718, 2350, 2541
AcuI	CTGAAG	2 cut(s)	144, 1508
AcyI	GRCGYC	2 cut(s)	3082, 3350
AdeI	CACNNNGTG	2 cut(s)	530, 2615
AfaI	GTAC	6 cut(s)	447, 1702, 2017, 2023, 2204, 2623
AflII	CTTAAG	1 cut(s)	2966
AflIII	ACRYGT	5 cut(s)	1189, 1312, 3305, 3338, 4026
AhlI	ACTAGT	2 cut(s)	224, 992
AjiI	CACGTC	1 cut(s)	2906
AjnI	CCWGG	7 cut(s)	1023, 1126, 1375, 1885, 2097, 2929, 3178
AjuI	GAANNNNNNNTTGG	4 cut(s)	1909, 1941, 3730, 3762
AleI	CACNNNNGTG	1 cut(s)	2381
AloI	GAACNNNNNNTCC	4 cut(s)	1144, 1176, 2748, 2780
Alw21I	GWGCWC	3 cut(s)	2944, 4042, 4396
Alw26I	GTCTC	7 cut(s)	62, 1231, 1944, 2391, 2660, 4051, 4459
Alw44I	GTGCAC	1 cut(s)	4038
AlwI	GGATC	9 cut(s)	805, 1154, 1472, 1485, 1615, 2614, 3464, 3477, 3493
AlwNI	CAGNNNCTG	3 cut(s)	1649, 1886, 3769
Ama87I	CYCGRG	3 cut(s)	2476, 3090, 3972
Aor13HI	TCCGGA	2 cut(s)	2278, 2766
ApaLI	GTGCAC	1 cut(s)	4038
ApoI	RAATTY	6 cut(s)	673, 1297, 1618, 1718, 2350, 2541
Asp700I	GAANNNNTTC	1 cut(s)	3228
Asp718I	GGTACC	1 cut(s)	2621
AspLEI	GCGC	1 cut(s)	1393
AsuC2I	CCSGG	2 cut(s)	9, 4287
AsuNHI	GCTAGC	1 cut(s)	3254
AvaI	CYCGRG	3 cut(s)	2476, 3090, 3972
AvaII	GGWCC	7 cut(s)	139, 1364, 1373, 2481, 3968, 4190, 4289
BaeGI	GKGCMC	1 cut(s)	4042
BaeI	ACNNNNGTAYC	2 cut(s)	1437, 1470
BalI	TGGCCA	2 cut(s)	771, 4302
BamHI	GGATCC	2 cut(s)	1477, 3469
BanI	GGYRCC	1 cut(s)	2621
BanII	GRGCYC	2 cut(s)	2414, 4396
BarI	GAAGNNNNNNTAC	2 cut(s)	1377, 1409
BauI	CACGAG	4 cut(s)	525, 2640, 2943, 3844
BbsI	GAAGAC	3 cut(s)	1623, 2900, 4279
Bbv12I	GWGCWC	3 cut(s)	2944, 4042, 4396
BceAI	ACGGC	2 cut(s)	1398, 2993
BcgI	CGANNNNNNTGC	2 cut(s)	2457, 2491
BciT130I	CCWGG	7 cut(s)	1025, 1128, 1377, 1887, 2099, 2931, 3180
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	2 cut(s)	9, 4287
BcoDI	GTCTC	7 cut(s)	62, 1231, 1944, 2391, 2660, 4051, 4459
BcuI	ACTAGT	2 cut(s)	224, 992
BfmI	CTRYAG	8 cut(s)	204, 624, 759, 1641, 2424, 3105, 3838, 3954
BfrI	CTTAAG	1 cut(s)	2966
BglI	GCCNNNNNGGC	1 cut(s)	4333
BglII	AGATCT	1 cut(s)	4422
BlpI	GCTNAGC	1 cut(s)	3096
BmcAI	AGTACT	1 cut(s)	2017
Bme1390I	CCNGG	9 cut(s)	9, 1025, 1128, 1377, 1887, 2099, 2931, 3180, 4287
Bme18I	GGWCC	7 cut(s)	139, 1364, 1373, 2481, 3968, 4190, 4289
BmeT110I	CYCGRG	3 cut(s)	2476, 3090, 3972
BmgBI	CACGTC	1 cut(s)	2906
BmrFI	CCNGG	9 cut(s)	9, 1025, 1128, 1377, 1887, 2099, 2931, 3180, 4287
BmrI	ACTGGG	3 cut(s)	1747, 1939, 2504
BmsI	GCATC	8 cut(s)	964, 1186, 2311, 2599, 2635, 3756, 3799, 3892
BmtI	GCTAGC	1 cut(s)	3258
BmuI	ACTGGG	3 cut(s)	1747, 1939, 2504
BoxI	GACNNNNGTC	2 cut(s)	300, 754
BpiI	GAAGAC	3 cut(s)	1623, 2900, 4279
BplI	GAGNNNNNCTC	4 cut(s)	1234, 1266, 2549, 2581
BpmI	CTGGAG	3 cut(s)	2145, 2622, 4410
Bpu10I	CCTNAGC	3 cut(s)	78, 501, 2037
Bpu1102I	GCTNAGC	1 cut(s)	3096
BpuEI	CTTGAG	4 cut(s)	573, 1773, 4035, 4114
BpuMI	CCSGG	2 cut(s)	9, 4287
Bsa29I	ATCGAT	1 cut(s)	910
BsaHI	GRCGYC	2 cut(s)	3082, 3350
BsaI	GGTCTC	3 cut(s)	62, 1231, 4459
BsaWI	WCCGGW	3 cut(s)	371, 2278, 2766
BsaXI	ACNNNNNCTCC	4 cut(s)	3398, 3428, 4378, 4408
Bse118I	RCCGGY	1 cut(s)	3505
Bse1I	ACTGG	9 cut(s)	799, 1595, 1753, 1945, 1967, 2023, 2370, 2510, 4393
Bse3DI	GCAATG	4 cut(s)	2459, 2859, 2897, 3557
BseAI	TCCGGA	2 cut(s)	2278, 2766
BseBI	CCWGG	7 cut(s)	1025, 1128, 1377, 1887, 2099, 2931, 3180
BseCI	ATCGAT	1 cut(s)	910
BseMI	GCAATG	4 cut(s)	2459, 2859, 2897, 3557
BseNI	ACTGG	9 cut(s)	799, 1595, 1753, 1945, 1967, 2023, 2370, 2510, 4393
BseSI	GKGCMC	1 cut(s)	4042
BseYI	CCCAGC	2 cut(s)	1199, 2414
BsgI	GTGCAG	1 cut(s)	2100
Bsh1236I	CGCG	2 cut(s)	21, 1391
BshNI	GGYRCC	1 cut(s)	2621
BshVI	ATCGAT	1 cut(s)	910
BsiHKAI	GWGCWC	3 cut(s)	2944, 4042, 4396
BsiHKCI	CYCGRG	3 cut(s)	2476, 3090, 3972
BsiSI	CCGG	7 cut(s)	8, 372, 1808, 2279, 2767, 3506, 4286
BslFI	GGGAC	2 cut(s)	125, 4302
BsmAI	GTCTC	7 cut(s)	62, 1231, 1944, 2391, 2660, 4051, 4459
BsmFI	GGGAC	2 cut(s)	125, 4302
BsmI	GAATGC	2 cut(s)	218, 515
Bso31I	GGTCTC	3 cut(s)	62, 1231, 4459
BsoBI	CYCGRG	3 cut(s)	2476, 3090, 3972
Bsp1286I	GDGCHC	4 cut(s)	2414, 2944, 4042, 4396
Bsp13I	TCCGGA	2 cut(s)	2278, 2766
Bsp1720I	GCTNAGC	1 cut(s)	3096
Bsp19I	CCATGG	1 cut(s)	2262
BspDI	ATCGAT	1 cut(s)	910
BspEI	TCCGGA	2 cut(s)	2278, 2766
BspFNI	CGCG	2 cut(s)	21, 1391
BspHI	TCATGA	1 cut(s)	3829
BspMAI	CTGCAG	6 cut(s)	208, 628, 1645, 2428, 3842, 3958
BspOI	GCTAGC	1 cut(s)	3258
BspPI	GGATC	9 cut(s)	805, 1154, 1472, 1485, 1615, 2614, 3464, 3477, 3493
BspT107I	GGYRCC	1 cut(s)	2621
BspTI	CTTAAG	1 cut(s)	2966
BspTNI	GGTCTC	3 cut(s)	62, 1231, 4459
BsrBI	CCGCTC	2 cut(s)	1484, 2924
BsrDI	GCAATG	4 cut(s)	2459, 2859, 2897, 3557
BsrFI	RCCGGY	1 cut(s)	3505
BsrI	ACTGG	9 cut(s)	799, 1595, 1753, 1945, 1967, 2023, 2370, 2510, 4393
BssAI	RCCGGY	1 cut(s)	3505
BssNI	GRCGYC	2 cut(s)	3082, 3350
BssSI	CACGAG	4 cut(s)	525, 2640, 2943, 3844
BssT1I	CCWWGG	5 cut(s)	36, 687, 1902, 2262, 2359
Bst2BI	CACGAG	4 cut(s)	525, 2640, 2943, 3844
Bst2UI	CCWGG	7 cut(s)	1025, 1128, 1377, 1887, 2099, 2931, 3180
Bst4CI	ACNGT	8 cut(s)	823, 1373, 1868, 2078, 2887, 3371, 4190, 4453
Bst6I	CTCTTC	5 cut(s)	177, 950, 1235, 1467, 2569
BstACI	GRCGYC	2 cut(s)	3082, 3350
BstAFI	CTTAAG	1 cut(s)	2966
BstAPI	GCANNNNNTGC	1 cut(s)	2636
BstDSI	CCRYGG	2 cut(s)	2262, 4186
BstEII	GGTNACC	1 cut(s)	3851
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstFNI	CGCG	2 cut(s)	21, 1391
BstHHI	GCGC	1 cut(s)	1393
BstMAI	GTCTC	7 cut(s)	62, 1231, 1944, 2391, 2660, 4051, 4459
BstNI	CCWGG	7 cut(s)	1025, 1128, 1377, 1887, 2099, 2931, 3180
BstNSI	RCATGY	7 cut(s)	1193, 1316, 1859, 3309, 3342, 3863, 4030
BstPAI	GACNNNNGTC	2 cut(s)	300, 754
BstPI	GGTNACC	1 cut(s)	3851
BstSCI	CCNGG	9 cut(s)	7, 1023, 1126, 1375, 1885, 2097, 2929, 3178, 4285
BstSFI	CTRYAG	8 cut(s)	204, 624, 759, 1641, 2424, 3105, 3838, 3954
BstSLI	GKGCMC	1 cut(s)	4042
BstUI	CGCG	2 cut(s)	21, 1391
BstV2I	GAAGAC	3 cut(s)	1623, 2900, 4279
BstX2I	RGATCY	4 cut(s)	1477, 1607, 3469, 4422
BstXI	CCANNNNNNTGG	2 cut(s)	173, 3872
BstYI	RGATCY	4 cut(s)	1477, 1607, 3469, 4422
Bsu15I	ATCGAT	1 cut(s)	910
BsuTUI	ATCGAT	1 cut(s)	910
BtgI	CCRYGG	2 cut(s)	2262, 4186
BtrI	CACGTC	1 cut(s)	2906
BtsI	GCAGTG	2 cut(s)	748, 2454
BtsIMutI	CAGTG	4 cut(s)	748, 2454, 3367, 3522
CaiI	CAGNNNCTG	3 cut(s)	1649, 1886, 3769
CciI	TCATGA	1 cut(s)	3829
CfoI	GCGC	1 cut(s)	1393
Cfr10I	RCCGGY	1 cut(s)	3505
ClaI	ATCGAT	1 cut(s)	910
CseI	GACGC	4 cut(s)	27, 1617, 1655, 3358
CsiI	ACCWGGT	2 cut(s)	1023, 2929
Csp6I	GTAC	6 cut(s)	446, 1701, 2016, 2022, 2203, 2622
CviQI	GTAC	6 cut(s)	446, 1701, 2016, 2022, 2203, 2622
DraI	TTTAAA	1 cut(s)	1624
DraIII	CACNNNGTG	2 cut(s)	530, 2615
DrdI	GACNNNNNNGTC	1 cut(s)	1371
DseDI	GACNNNNNNGTC	1 cut(s)	1371
EaeI	YGGCCR	3 cut(s)	769, 4300, 4319
Eam1104I	CTCTTC	5 cut(s)	177, 950, 1235, 1467, 2569
EarI	CTCTTC	5 cut(s)	177, 950, 1235, 1467, 2569
Ecl136II	GAGCTC	1 cut(s)	4394
Eco130I	CCWWGG	5 cut(s)	36, 687, 1902, 2262, 2359
Eco147I	AGGCCT	2 cut(s)	121, 4099
Eco24I	GRGCYC	2 cut(s)	2414, 4396
Eco31I	GGTCTC	3 cut(s)	62, 1231, 4459
Eco32I	GATATC	1 cut(s)	2473
Eco47I	GGWCC	7 cut(s)	139, 1364, 1373, 2481, 3968, 4190, 4289
Eco53kI	GAGCTC	1 cut(s)	4394
Eco57I	CTGAAG	2 cut(s)	144, 1508
Eco88I	CYCGRG	3 cut(s)	2476, 3090, 3972
Eco91I	GGTNACC	1 cut(s)	3851
EcoICRI	GAGCTC	1 cut(s)	4394
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	3851
EcoRI	GAATTC	1 cut(s)	673
EcoRII	CCWGG	7 cut(s)	1023, 1126, 1375, 1885, 2097, 2929, 3178
EcoRV	GATATC	1 cut(s)	2473
EcoT14I	CCWWGG	5 cut(s)	36, 687, 1902, 2262, 2359
EcoT22I	ATGCAT	2 cut(s)	3202, 3792
EcoT38I	GRGCYC	2 cut(s)	2414, 4396
ErhI	CCWWGG	5 cut(s)	36, 687, 1902, 2262, 2359
FalI	AAGNNNNNCTT	4 cut(s)	921, 953, 3213, 3245
FaqI	GGGAC	2 cut(s)	125, 4302
FauI	CCCGC	4 cut(s)	112, 1489, 1996, 2857
FauNDI	CATATG	2 cut(s)	299, 2875
FbaI	TGATCA	1 cut(s)	889
FblI	GTMKAC	3 cut(s)	16, 2524, 4435
FriOI	GRGCYC	2 cut(s)	2414, 4396
GlaI	GCGC	1 cut(s)	1392
GsaI	CCCAGC	2 cut(s)	1203, 2418
GsuI	CTGGAG	3 cut(s)	2145, 2622, 4410
HapII	CCGG	7 cut(s)	8, 372, 1808, 2279, 2767, 3506, 4286
HgaI	GACGC	4 cut(s)	27, 1617, 1655, 3358
HhaI	GCGC	1 cut(s)	1393
Hin1I	GRCGYC	2 cut(s)	3082, 3350
Hin6I	GCGC	1 cut(s)	1391
HinP1I	GCGC	1 cut(s)	1391
HincII	GTYRAC	3 cut(s)	424, 1305, 2525
HindII	GTYRAC	3 cut(s)	424, 1305, 2525
HindIII	AAGCTT	1 cut(s)	3939
HpaII	CCGG	7 cut(s)	8, 372, 1808, 2279, 2767, 3506, 4286
Hpy99I	CGWCG	3 cut(s)	1419, 2958, 3024
HpyCH4III	ACNGT	8 cut(s)	823, 1373, 1868, 2078, 2887, 3371, 4190, 4453
HpyCH4IV	ACGT	4 cut(s)	1168, 1515, 2905, 3082
HpySE526I	ACGT	4 cut(s)	1168, 1515, 2905, 3082
Hsp92I	GRCGYC	2 cut(s)	3082, 3350
HspAI	GCGC	1 cut(s)	1391
Kpn2I	TCCGGA	2 cut(s)	2278, 2766
KpnI	GGTACC	1 cut(s)	2625
Ksp22I	TGATCA	1 cut(s)	889
LweI	GCATC	8 cut(s)	964, 1186, 2311, 2599, 2635, 3756, 3799, 3892
MabI	ACCWGGT	2 cut(s)	1023, 2929
MaeII	ACGT	4 cut(s)	1168, 1515, 2905, 3082
MbiI	CCGCTC	2 cut(s)	1484, 2924
MfeI	CAATTG	3 cut(s)	876, 3060, 3513
MflI	RGATCY	4 cut(s)	1477, 1607, 3469, 4422
MhlI	GDGCHC	4 cut(s)	2414, 2944, 4042, 4396
MlsI	TGGCCA	2 cut(s)	771, 4302
MluNI	TGGCCA	2 cut(s)	771, 4302
MlyI	GAGTC	7 cut(s)	1252, 1417, 1846, 2165, 3017, 3305, 3310
MmeI	TCCRAC	4 cut(s)	2754, 2906, 4409, 4442
Mox20I	TGGCCA	2 cut(s)	771, 4302
Mph1103I	ATGCAT	2 cut(s)	3202, 3792
MroI	TCCGGA	2 cut(s)	2278, 2766
MroXI	GAANNNNTTC	1 cut(s)	3228
MscI	TGGCCA	2 cut(s)	771, 4302
MslI	CAYNNNNRTG	3 cut(s)	1194, 2261, 2381
Msp20I	TGGCCA	2 cut(s)	771, 4302
MspA1I	CMGCKG	3 cut(s)	2633, 3175, 3802
MspCI	CTTAAG	1 cut(s)	2966
MspI	CCGG	7 cut(s)	8, 372, 1808, 2279, 2767, 3506, 4286
MspR9I	CCNGG	9 cut(s)	9, 1025, 1128, 1377, 1887, 2099, 2931, 3180, 4287
MunI	CAATTG	3 cut(s)	876, 3060, 3513
Mva1269I	GAATGC	2 cut(s)	218, 515
MvaI	CCWGG	7 cut(s)	1025, 1128, 1377, 1887, 2099, 2931, 3180
MvnI	CGCG	2 cut(s)	21, 1391
NciI	CCSGG	2 cut(s)	9, 4287
NcoI	CCATGG	1 cut(s)	2262
NdeI	CATATG	2 cut(s)	299, 2875
NheI	GCTAGC	1 cut(s)	3254
NmeAIII	GCCGAG	2 cut(s)	39, 2224
NmuCI	GTSAC	3 cut(s)	1457, 3313, 3346
NsiI	ATGCAT	2 cut(s)	3202, 3792
NspI	RCATGY	7 cut(s)	1193, 1316, 1859, 3309, 3342, 3863, 4030
OliI	CACNNNNGTG	1 cut(s)	2381
PaeR7I	CTCGAG	2 cut(s)	3090, 3972
PagI	TCATGA	1 cut(s)	3829
PceI	AGGCCT	2 cut(s)	121, 4099
PciI	ACATGT	5 cut(s)	1189, 1312, 3305, 3338, 4026
PcsI	WCGNNNNNNNCGW	4 cut(s)	2704, 2950, 3088, 3097
PctI	GAATGC	2 cut(s)	218, 515
PdmI	GAANNNNTTC	1 cut(s)	3228
PflFI	GACNNNGTC	1 cut(s)	2671
PflMI	CCANNNNNTGG	5 cut(s)	902, 1133, 1601, 3698, 4298
PfoI	TCCNGGA	1 cut(s)	4285
PleI	GAGTC	7 cut(s)	1251, 1416, 1845, 2165, 3016, 3304, 3310
PpsI	GAGTC	7 cut(s)	1251, 1416, 1845, 2165, 3016, 3304, 3310
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	5 cut(s)	1189, 1312, 3305, 3338, 4026
PshAI	GACNNNNGTC	2 cut(s)	300, 754
Psp124BI	GAGCTC	1 cut(s)	4396
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	7 cut(s)	1023, 1126, 1375, 1885, 2097, 2929, 3178
PspEI	GGTNACC	1 cut(s)	3851
PspFI	CCCAGC	2 cut(s)	1199, 2414
PspGI	CCWGG	7 cut(s)	1023, 1126, 1375, 1885, 2097, 2929, 3178
PspPPI	RGGWCCY	1 cut(s)	139
PstI	CTGCAG	6 cut(s)	208, 628, 1645, 2428, 3842, 3958
PstNI	CAGNNNCTG	3 cut(s)	1649, 1886, 3769
PsuI	RGATCY	4 cut(s)	1477, 1607, 3469, 4422
PsyI	GACNNNGTC	1 cut(s)	2671
PvuII	CAGCTG	2 cut(s)	2633, 3175
RsaI	GTAC	6 cut(s)	447, 1702, 2017, 2023, 2204, 2623
RsaNI	GTAC	6 cut(s)	446, 1701, 2016, 2022, 2203, 2622
RseI	CAYNNNNRTG	3 cut(s)	1194, 2261, 2381
SacI	GAGCTC	1 cut(s)	4396
SalI	GTCGAC	1 cut(s)	2523
SbfI	CCTGCAGG	1 cut(s)	3958
ScaI	AGTACT	1 cut(s)	2017
SchI	GAGTC	7 cut(s)	1252, 1417, 1846, 2165, 3017, 3305, 3310
ScrFI	CCNGG	9 cut(s)	9, 1025, 1128, 1377, 1887, 2099, 2931, 3180, 4287
SdaI	CCTGCAGG	1 cut(s)	3958
SduI	GDGCHC	4 cut(s)	2414, 2944, 4042, 4396
SexAI	ACCWGGT	2 cut(s)	1023, 2929
SfaNI	GCATC	8 cut(s)	964, 1186, 2311, 2599, 2635, 3756, 3799, 3892
SfcI	CTRYAG	8 cut(s)	204, 624, 759, 1641, 2424, 3105, 3838, 3954
Sfr274I	CTCGAG	2 cut(s)	3090, 3972
SinI	GGWCC	7 cut(s)	139, 1364, 1373, 2481, 3968, 4190, 4289
SlaI	CTCGAG	2 cut(s)	3090, 3972
SmiMI	CAYNNNNRTG	3 cut(s)	1194, 2261, 2381
SmlI	CTYRAG	7 cut(s)	588, 1788, 2966, 3090, 3972, 4050, 4129
SmoI	CTYRAG	7 cut(s)	588, 1788, 2966, 3090, 3972, 4050, 4129
SpeI	ACTAGT	2 cut(s)	224, 992
Sse8387I	CCTGCAGG	1 cut(s)	3958
SseBI	AGGCCT	2 cut(s)	121, 4099
SspI	AATATT	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	4396
StuI	AGGCCT	2 cut(s)	121, 4099
StyD4I	CCNGG	9 cut(s)	7, 1023, 1126, 1375, 1885, 2097, 2929, 3178, 4285
StyI	CCWWGG	5 cut(s)	36, 687, 1902, 2262, 2359
TaaI	ACNGT	8 cut(s)	823, 1373, 1868, 2078, 2887, 3371, 4190, 4453
TaiI	ACGT	4 cut(s)	1171, 1518, 2908, 3085
TaqI	TCGA	9 cut(s)	148, 910, 1417, 2524, 2593, 2805, 3091, 3973, 3995
TaqII	GACCGA	1 cut(s)	1213
TatI	WGTACW	2 cut(s)	2015, 2202
TauI	GCSGC	4 cut(s)	1391, 2924, 4006, 4339
TscAI	CASTG	4 cut(s)	748, 2461, 3374, 3529
TseFI	GTSAC	3 cut(s)	1457, 3313, 3346
Tsp45I	GTSAC	3 cut(s)	1457, 3313, 3346
TspGWI	ACGGA	3 cut(s)	194, 766, 3618
TspRI	CASTG	4 cut(s)	748, 2461, 3374, 3529
Tth111I	GACNNNGTC	1 cut(s)	2671
Van91I	CCANNNNNTGG	5 cut(s)	902, 1133, 1601, 3698, 4298
Vha464I	CTTAAG	1 cut(s)	2966
VneI	GTGCAC	1 cut(s)	4038
VpaK11BI	GGWCC	7 cut(s)	139, 1364, 1373, 2481, 3968, 4190, 4289
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	6 cut(s)	673, 1297, 1618, 1718, 2350, 2541
XbaI	TCTAGA	1 cut(s)	2270
XceI	RCATGY	7 cut(s)	1193, 1316, 1859, 3309, 3342, 3863, 4030
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1760, 2749
XhoI	CTCGAG	2 cut(s)	3090, 3972
XmiI	GTMKAC	3 cut(s)	16, 2524, 4435
XmnI	GAANNNNTTC	1 cut(s)	3228
ZraI	GACGTC	1 cut(s)	3083
ZrmI	AGTACT	1 cut(s)	2017
Zsp2I	ATGCAT	2 cut(s)	3202, 3792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.