Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001753.1

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Reverse (-)

187158 .. 194681

Gene Structure 7524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001753.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4401 bp

atggctccgtcgcgtagacgcggagcgagcaaggctaagagcaaggcgcagttgagtctcggcgatcttgtcctcgccaaggtcaagggtcaccccttttggcccgccaagattagcaagcctgaagattgggagaaagtccctgatcctaagaagtattttgtccaattttttggaacagaagagatagcttttgttgcacctgtagatattcaggcattcactagtgaggcaaaaagtaaaatatcagctcgctgtcaaggcaaaacaaagtatttttcccaagctgttaaggaaatatgtgaagcatttgatgagttacagaaaaagaaatcaaatgatgtgagggttgatactgatagatcagatcttggatgtgatgctccatctgttgacggggtagaggatgatgtggttaatgtcgagataaaagatgataagggtgcagtcggttctgatggagatacagttaaggaagaaggcacagatgattttggctctaagttggagcgttgttcacagatacgaggtgaaaatgatactgaagatgtagacccatctacctcttgtggagcaaaggagagttcatctcctgtcttttcttctgaggaaaataagaaaatgtcctcagttgttaaccctaaggtaccaaagacatccaattcttctcatttgaagaaagaagtttctgattataagtatgaagatgatgatattcgcaccaagaaacatggtgagggacagaggtcattagtaaatggtcacaagatgacaaagatgggtagtggatcaaagaggagaagtgatggcatggttgaagtacacaagggcagctctttaacgtcattgaaggaagatggctctgttggttgtgttgatcgcccacaatctggtgagcgattgagagatggaacaacaggcaaaactatctctggtggcaataaaagaaaactatccccagattcgcttaaacctgaaactggaatcagggatgggaaaaggacgaaagacctgcttaaagccaaaaagcatgtcaaagtcctagatgaggcaaaggactctgtggatgatcttgaagcccaggccagagatagactctctggaagaacaaagaatgctcaagttgggcgtggaaagcctgatttgggagcaaatgatatttcacatctgtccaaaaagtcaaagcatgtagatgcaggggaaaattcccggcggagttcattctcaaaaagtcccccgagttctgatgttgctgatcggaagatggttaaaaaattagattcaaaaatgtctacttcacgtgttaaaccagagaacattctggtatccaaatcccaaaatgtcaacgcttctggtgatgaagctgttctacccctagcaaagcgccgtcgtcgagcgatggaggctatgtctgattctgacactttggtttctgatgagaaaatggaaaaggctcctgttcagaagaataatatagcacggtctagtgatgtcaaagtttcagcacctcagacacagagaaaacgtagggctgtatgcctttatgacgatgaggaggaggaagaaaaacccaaaacacctgttcatggaggctcttcccgaaatgttaaagcaccttcaaattcagatgctataaagagcactggtgaaaatattgagagttctgatactgctccagctctacacagtacaaaacatgctactgaagttcatggcagccatacaaaggaatcatcttcccagctgaagaatgggtctctgtcacctagcaaacctgcagtagatgagaagaggtctcaaaagcaaactcaaactgatgaaaagaggcttgaaaaggcagtgcacatctaccggagtccagcaaaattagaacctgaccagcaagtgtccaaagagtcaaaaccaaccttgacttctcctaagaagtctcctatgttggctacagctactaaacctgcagttgaacaacaaaaagccacaaaagctccggttaaaggctctaatactgcaactcagaaaaagggtcaggctgcatctggcaacagttctagaacagtttctaatagtgtggtttcttctcaaaaacctaaacctactgcaagaccaatatcccggatcaatgactccgctattttgcaggaaaataccatagagtacgatttgttaccggcggaaagaatggaagttggaaaagaagataaaagtgccttattggttgattctaagactctggaatcttcttcgtctatgaagcatctaattgcagttgcacaagcaaaaaggaaacaaacgcagtcgcacaactacttctttgaaatttccagttctgcttttttagctagcacagatgggacgtgccccagtcctttggcagttcagggtctttatcccattagcaacagtgcattgcaggcagatattccaggacctattcaacccaccacaaacatagcttctccatctactcatagtcgcccttctgcattacaaaatcaactggacatcgaggacatttcagaaagaagagttagttctgggcatcaaacagctggaggatcactgagtggtggtaccgaggcagctgttgctcgtgatgcttttgaaggaatgatagaaactttgtcaaggaccaaggaaagtattagtcgggcaactcgctgtgcccttgattgtgccaagtatggtatagctaacgaggttgtggaactgcttatccgaaagctggagagtgagcctaattttcatcgtaaggtcgacctgttctttcttgtggactccatcacacaaatctcacatactcagaaaggtattgctggagcttcatatgttccaactgttcaagcagcattgccacggcttctaggtgctgctgctccacctggttctggtgctcgtgagaatcgtcgtcagtgtcataaggttttacggctctggcttgagaggaaaatttttccgcaagcagttcttcgtcggtacatggatgacattggagtttcaaatgatgatacaactgctggtttctctcttagacgtccatctcgatcagagcgtgctattgatgatccaatcagggaaatggaaggaatgtttgtggatgagtatggcagcaatgctacatttcagttgcctggatttctatcttctcatgcatttgaagatgatgatgatgatgaagaagaagaagttccaagctgttcatacaaggaggctagtcatccatcaccggtagaaactacccatgcctctggggagtccgaaacctgtgctgttactccaaatgataggcggcattgcatcttagaggatgtggacggtgagcttgaaatggaagacgtttctggacacccaaaggatgaaagaccgtcatctgttaatggttcttttgaaatggatccaccacagcaagggccacatagggtcatggaaccagttttaaatgcttgcaccgacttgcccccacttccagtgggttccccacctttgcctcttgattctcctcctccaccccctcctttgcctccctcaccaccaccaccacctcccccactatctccatcaccgccaccaccacctccacctcccccctcacagcctcctcctcctctaccactatcaggtcctccacatttgttgattcctcagtcatctagaccaacccagccttcattagtagcccaacagatgatgccacctcaatcatcaatccattcttcaccacagttggcatatcaaccttctgtacctcatgaatactgcagcactagtggcaaccaactagtccaaatgactggaaatgctcctcatgggggtgctattgattctgccgtgaaaaccgaaatgtttccacagcagcaagcttgctttgtcccagcaggagtatgtggccctcgagaaccttctggatttaattctacgaggcaagtagagcatggacacagtgacattttcataaacacacaagtctctcaaccaaaccaacaggtccaacaatttcaacaaggtaatgcaccttttgctcctagacctttacctccagccccgccacaaaatccatccagtcacttctcctatgcaaagcccccagttcaacaacatccccagcatccgtaccgccccccataccctttgccacctgttcctgataatcagagacgctttgttactgatgaacaacggggtgtctggataaatggtgggaggcctccacacccaggaccaccatttggccatgaaggtttttttcggccaccagttgagaggccaccagcaaataatatgaattttcaacgtcctgctcctaataatgtaccctctggagctccaatatcaggtcatagtgctgctcagatcttgccgtgtaggcctgatatttctgctgttaattgttggagaccagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1466

Amino Acids

159.11

Weight (kDa)

8.05

Isoelectric Point (pI)

63.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AatII	GACGTC	1 cut(s)	3034
Acc36I	ACCTGC	3 cut(s)	1020, 1783, 1963
Acc65I	GGTACC	2 cut(s)	646, 2570
AccB1I	GGYRCC	2 cut(s)	646, 2570
AccB7I	CCANNNNNTGG	2 cut(s)	890, 4223
AccI	GTMKAC	4 cut(s)	16, 552, 1292, 2754
AccII	CGCG	2 cut(s)	13, 21
AclWI	GGATC	7 cut(s)	140, 796, 2123, 2563, 3056, 3386, 3399
AcoI	YGGCCR	2 cut(s)	4225, 4244
AcsI	RAATTY	5 cut(s)	1204, 1621, 2316, 2946, 4279
AcuI	CTGAAG	4 cut(s)	144, 564, 1725, 1766
AcvI	CACGTG	1 cut(s)	1301
AcyI	GRCGYC	1 cut(s)	3031
AdeI	CACNNNGTG	1 cut(s)	2564
AfaI	GTAC	9 cut(s)	648, 822, 1690, 2156, 2572, 2975, 3741, 4109, 4308
AflIII	ACRYGT	1 cut(s)	1300
AgeI	ACCGGT	1 cut(s)	3223
AhlI	ACTAGT	3 cut(s)	224, 3761, 3775
AjiI	CACGTC	1 cut(s)	2355
AjnI	CCWGG	5 cut(s)	1080, 2422, 2878, 3127, 4210
AjuI	GAANNNNNNNTTGG	4 cut(s)	1897, 1929, 3646, 3678
AloI	GAACNNNNNNTCC	2 cut(s)	2697, 2729
Alw21I	GWGCWC	4 cut(s)	1643, 1845, 2893, 4321
Alw26I	GTCTC	7 cut(s)	62, 1761, 1800, 1932, 3967, 4144, 4384
Alw44I	GTGCAC	1 cut(s)	1841
AlwI	GGATC	7 cut(s)	140, 796, 2123, 2563, 3056, 3386, 3399
Ama87I	CYCGRG	2 cut(s)	1237, 3888
AoxI	GGCC	9 cut(s)	101, 1083, 3407, 3883, 4199, 4225, 4244, 4259, 4361
ApaLI	GTGCAC	1 cut(s)	1841
ApoI	RAATTY	5 cut(s)	1204, 1621, 2316, 2946, 4279
ArsI	GACNNNNNNTTYG	2 cut(s)	1017, 1049
AsiGI	ACCGGT	1 cut(s)	3223
Asp700I	GAANNNNTTC	4 cut(s)	1365, 2056, 3183, 3840
Asp718I	GGTACC	2 cut(s)	646, 2570
AspLEI	GCGC	2 cut(s)	49, 1386
AspS9I	GGNCC	8 cut(s)	102, 2426, 2628, 3407, 3617, 3884, 3982, 4214
AsuC2I	CCSGG	2 cut(s)	1210, 2113
AsuNHI	GCTAGC	1 cut(s)	2339
AvaI	CYCGRG	2 cut(s)	1237, 3888
AvaII	GGWCC	5 cut(s)	2426, 2628, 3617, 3982, 4214
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	3 cut(s)	1845, 2360, 2665
BalI	TGGCCA	1 cut(s)	4227
BamHI	GGATCC	1 cut(s)	3391
BanI	GGYRCC	2 cut(s)	646, 2570
BanII	GRGCYC	1 cut(s)	4321
BarI	GAAGNNNNNNTAC	2 cut(s)	1353, 1385
BauI	CACGAG	2 cut(s)	2589, 2892
BbrPI	CACGTG	1 cut(s)	1301
BbsI	GAAGAC	1 cut(s)	3336
Bbv12I	GWGCWC	4 cut(s)	1643, 1845, 2893, 4321
BceAI	ACGGC	5 cut(s)	1371, 2870, 2942, 3809, 4339
BcgI	CGANNNNNNTGC	4 cut(s)	994, 1028, 3245, 3279
BciT130I	CCWGG	5 cut(s)	1082, 2424, 2880, 3129, 4212
BciVI	GTATCC	1 cut(s)	1336
BcnI	CCSGG	2 cut(s)	1210, 2113
BcoDI	GTCTC	7 cut(s)	62, 1761, 1800, 1932, 3967, 4144, 4384
BcuI	ACTAGT	3 cut(s)	224, 3761, 3775
BfmI	CTRYAG	5 cut(s)	204, 1776, 1941, 1956, 3754
BfoI	RGCGCY	1 cut(s)	1387
BfuAI	ACCTGC	3 cut(s)	1020, 1783, 1963
BfuI	GTATCC	1 cut(s)	1336
BglI	GCCNNNNNGGC	1 cut(s)	4360
BglII	AGATCT	2 cut(s)	367, 4347
Bme1390I	CCNGG	7 cut(s)	1082, 1210, 2113, 2424, 2880, 3129, 4212
Bme18I	GGWCC	5 cut(s)	2426, 2628, 3617, 3982, 4214
BmeT110I	CYCGRG	2 cut(s)	1237, 3888
BmgBI	CACGTC	1 cut(s)	2355
BmgT120I	GGNCC	8 cut(s)	102, 2426, 2628, 3407, 3617, 3884, 3982, 4214
BmiI	GGNNCC	7 cut(s)	6, 648, 1455, 2572, 3393, 3426, 3472
BmrFI	CCNGG	7 cut(s)	1082, 1210, 2113, 2424, 2880, 3129, 4212
BmrI	ACTGGG	2 cut(s)	2355, 4076
BmtI	GCTAGC	1 cut(s)	2343
BmuI	ACTGGG	2 cut(s)	2355, 4076
BoxI	GACNNNNGTC	1 cut(s)	745
BpiI	GAAGAC	1 cut(s)	3336
BplI	GAGNNNNNCTC	4 cut(s)	574, 606, 1080, 1112
BpmI	CTGGAG	6 cut(s)	1659, 2571, 2744, 2835, 4017, 4335
BpuEI	CTTGAG	2 cut(s)	1104, 2957
BpuMI	CCSGG	2 cut(s)	1210, 2113
BsaAI	YACGTR	1 cut(s)	1301
BsaBI	GATNNNNATC	1 cut(s)	3136
BsaHI	GRCGYC	1 cut(s)	3031
BsaI	GGTCTC	3 cut(s)	1761, 1800, 4384
BsaJI	CCNNGG	6 cut(s)	78, 1080, 2574, 2631, 2852, 4210
BsaWI	WCCGGW	3 cut(s)	1851, 1987, 3223
BsaXI	ACNNNNNCTCC	6 cut(s)	453, 483, 1394, 1424, 1969, 1999
Bse118I	RCCGGY	2 cut(s)	2167, 3223
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	4 cut(s)	2405, 2846, 3115, 3289
Bse8I	GATNNNNATC	1 cut(s)	3136
BseBI	CCWGG	5 cut(s)	1082, 2424, 2880, 3129, 4212
BseDI	CCNNGG	6 cut(s)	78, 1080, 2574, 2631, 2852, 4210
BseJI	GATNNNNATC	1 cut(s)	3136
BseMI	GCAATG	4 cut(s)	2405, 2846, 3115, 3289
BseMII	CTCAG	8 cut(s)	597, 642, 1523, 2027, 2552, 2813, 3653, 4358
BseRI	GAGGAG	9 cut(s)	811, 1568, 1571, 3486, 3489, 3585, 3588, 3591, 3789
BseSI	GKGCMC	3 cut(s)	1845, 2360, 2665
BseYI	CCCAGC	4 cut(s)	1740, 3657, 3868, 4098
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	2 cut(s)	13, 21
BshFI	GGCC	9 cut(s)	103, 1085, 3409, 3885, 4201, 4227, 4246, 4261, 4363
BshNI	GGYRCC	2 cut(s)	646, 2570
BshTI	ACCGGT	1 cut(s)	3223
BsiHKAI	GWGCWC	4 cut(s)	1643, 1845, 2893, 4321
BsiHKCI	CYCGRG	2 cut(s)	1237, 3888
BsiSI	CCGG	6 cut(s)	1210, 1852, 1988, 2113, 2168, 3224
BslFI	GGGAC	5 cut(s)	125, 753, 1218, 2365, 3851
BsmAI	GTCTC	7 cut(s)	62, 1761, 1800, 1932, 3967, 4144, 4384
BsmBI	CGTCTC	1 cut(s)	4144
BsmFI	GGGAC	5 cut(s)	125, 753, 1218, 2365, 3851
BsmI	GAATGC	2 cut(s)	218, 1120
BsnI	GGCC	9 cut(s)	103, 1085, 3409, 3885, 4201, 4227, 4246, 4261, 4363
Bso31I	GGTCTC	3 cut(s)	1761, 1800, 4384
BsoBI	CYCGRG	2 cut(s)	1237, 3888
Bsp1286I	GDGCHC	6 cut(s)	1643, 1845, 2360, 2665, 2893, 4321
BspANI	GGCC	9 cut(s)	103, 1085, 3409, 3885, 4201, 4227, 4246, 4261, 4363
BspCNI	CTCAG	8 cut(s)	598, 641, 1522, 2026, 2553, 2812, 3652, 4357
BspFNI	CGCG	2 cut(s)	13, 21
BspHI	TCATGA	1 cut(s)	3745
BspLI	GGNNCC	7 cut(s)	6, 648, 1455, 2572, 3393, 3426, 3472
BspMAI	CTGCAG	3 cut(s)	1780, 1960, 3758
BspMI	ACCTGC	3 cut(s)	1020, 1783, 1963
BspOI	GCTAGC	1 cut(s)	2343
BspPI	GGATC	7 cut(s)	140, 796, 2123, 2563, 3056, 3386, 3399
BspQI	GCTCTTC	1 cut(s)	1600
BspT107I	GGYRCC	2 cut(s)	646, 2570
BspTNI	GGTCTC	3 cut(s)	1761, 1800, 4384
BsrDI	GCAATG	4 cut(s)	2405, 2846, 3115, 3289
BsrFI	RCCGGY	2 cut(s)	2167, 3223
BssAI	RCCGGY	2 cut(s)	2167, 3223
BssECI	CCNNGG	6 cut(s)	78, 1080, 2574, 2631, 2852, 4210
BssNI	GRCGYC	1 cut(s)	3031
BssSI	CACGAG	2 cut(s)	2589, 2892
BssT1I	CCWWGG	2 cut(s)	78, 2631
Bst2BI	CACGAG	2 cut(s)	2589, 2892
Bst2UI	CCWGG	5 cut(s)	1082, 2424, 2880, 3129, 4212
Bst6I	CTCTTC	4 cut(s)	177, 1600, 1784, 2518
BstACI	GRCGYC	1 cut(s)	3031
BstAPI	GCANNNNNTGC	2 cut(s)	2585, 4013
BstBAI	YACGTR	1 cut(s)	1301
BstDSI	CCRYGG	1 cut(s)	2852
BstEII	GGTNACC	1 cut(s)	89
BstENI	CCTNNNNNAGG	2 cut(s)	77, 1046
BstFNI	CGCG	2 cut(s)	13, 21
BstH2I	RGCGCY	1 cut(s)	1387
BstHHI	GCGC	2 cut(s)	49, 1386
BstMAI	GTCTC	7 cut(s)	62, 1761, 1800, 1932, 3967, 4144, 4384
BstNI	CCWGG	5 cut(s)	1082, 2424, 2880, 3129, 4212
BstNSI	RCATGY	3 cut(s)	1034, 1190, 1700
BstPAI	GACNNNNGTC	1 cut(s)	745
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	7 cut(s)	1080, 1208, 2111, 2422, 2878, 3127, 4210
BstSFI	CTRYAG	5 cut(s)	204, 1776, 1941, 1956, 3754
BstSLI	GKGCMC	3 cut(s)	1845, 2360, 2665
BstUI	CGCG	2 cut(s)	13, 21
BstV2I	GAAGAC	1 cut(s)	3336
BstX2I	RGATCY	3 cut(s)	367, 3391, 4347
BstXI	CCANNNNNNTGG	4 cut(s)	173, 2368, 3245, 3788
BstYI	RGATCY	3 cut(s)	367, 3391, 4347
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	1336
BsuRI	GGCC	9 cut(s)	103, 1085, 3409, 3885, 4201, 4227, 4246, 4261, 4363
BtgI	CCRYGG	1 cut(s)	2852
BtgZI	GCGATG	1 cut(s)	1412
BtrI	CACGTC	1 cut(s)	2355
BtsI	GCAGTG	1 cut(s)	1845
BtsIMutI	CAGTG	7 cut(s)	1641, 1845, 2407, 2558, 2915, 3471, 3943
BveI	ACCTGC	3 cut(s)	1020, 1783, 1963
CciI	TCATGA	1 cut(s)	3745
CfoI	GCGC	2 cut(s)	49, 1386
Cfr10I	RCCGGY	2 cut(s)	2167, 3223
Cfr13I	GGNCC	8 cut(s)	102, 2426, 2628, 3407, 3617, 3884, 3982, 4214
CseI	GACGC	2 cut(s)	27, 4161
CsiI	ACCWGGT	1 cut(s)	2878
Csp6I	GTAC	9 cut(s)	647, 821, 1689, 2155, 2571, 2974, 3740, 4108, 4307
CspAI	ACCGGT	1 cut(s)	3223
CspCI	CAANNNNNGTGG	2 cut(s)	3612, 3647
CviQI	GTAC	9 cut(s)	647, 821, 1689, 2155, 2571, 2974, 3740, 4108, 4307
DraI	TTTAAA	1 cut(s)	3435
DraIII	CACNNNGTG	1 cut(s)	2564
EaeI	YGGCCR	2 cut(s)	4225, 4244
Eam1104I	CTCTTC	4 cut(s)	177, 1600, 1784, 2518
EarI	CTCTTC	4 cut(s)	177, 1600, 1784, 2518
EciI	GGCGGA	2 cut(s)	1228, 2186
Ecl136II	GAGCTC	1 cut(s)	4319
Eco130I	CCWWGG	2 cut(s)	78, 2631
Eco147I	AGGCCT	2 cut(s)	4201, 4363
Eco24I	GRGCYC	1 cut(s)	4321
Eco31I	GGTCTC	3 cut(s)	1761, 1800, 4384
Eco47I	GGWCC	5 cut(s)	2426, 2628, 3617, 3982, 4214
Eco53kI	GAGCTC	1 cut(s)	4319
Eco57I	CTGAAG	4 cut(s)	144, 564, 1725, 1766
Eco72I	CACGTG	1 cut(s)	1301
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	1237, 3888
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	4319
EcoNI	CCTNNNNNAGG	2 cut(s)	77, 1046
EcoO109I	RGGNCCY	2 cut(s)	2426, 3617
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	5 cut(s)	1080, 2422, 2878, 3127, 4210
EcoT14I	CCWWGG	2 cut(s)	78, 2631
EcoT22I	ATGCAT	1 cut(s)	3151
EcoT38I	GRGCYC	1 cut(s)	4321
ErhI	CCWWGG	2 cut(s)	78, 2631
Esp3I	CGTCTC	1 cut(s)	4144
FalI	AAGNNNNNCTT	4 cut(s)	999, 1031, 2949, 2981
FaqI	GGGAC	5 cut(s)	125, 753, 1218, 2365, 3851
FauI	CCCGC	2 cut(s)	112, 4047
FauNDI	CATATG	1 cut(s)	2824
FblI	GTMKAC	4 cut(s)	16, 552, 1292, 2754
FriOI	GRGCYC	1 cut(s)	4321
GlaI	GCGC	2 cut(s)	48, 1385
GsaI	CCCAGC	4 cut(s)	1744, 3661, 3872, 4102
GsuI	CTGGAG	6 cut(s)	1659, 2571, 2744, 2835, 4017, 4335
HaeII	RGCGCY	1 cut(s)	1387
HaeIII	GGCC	9 cut(s)	103, 1085, 3409, 3885, 4201, 4227, 4246, 4261, 4363
HapII	CCGG	6 cut(s)	1210, 1852, 1988, 2113, 2168, 3224
HgaI	GACGC	2 cut(s)	27, 4161
HhaI	GCGC	2 cut(s)	49, 1386
Hin1I	GRCGYC	1 cut(s)	3031
Hin6I	GCGC	2 cut(s)	47, 1384
HinP1I	GCGC	2 cut(s)	47, 1384
HincII	GTYRAC	4 cut(s)	394, 637, 1345, 2755
HindII	GTYRAC	4 cut(s)	394, 637, 1345, 2755
HindIII	AAGCTT	1 cut(s)	3855
HpaI	GTTAAC	1 cut(s)	637
HpaII	CCGG	6 cut(s)	1210, 1852, 1988, 2113, 2168, 3224
Hpy99I	CGWCG	5 cut(s)	13, 1392, 1395, 2907, 2973
HpyCH4IV	ACGT	7 cut(s)	842, 1300, 1525, 2354, 3031, 3333, 4288
HpySE526I	ACGT	7 cut(s)	842, 1300, 1525, 2354, 3031, 3333, 4288
Hsp92I	GRCGYC	1 cut(s)	3031
HspAI	GCGC	2 cut(s)	47, 1384
KpnI	GGTACC	2 cut(s)	650, 2574
KspAI	GTTAAC	1 cut(s)	637
LguI	GCTCTTC	1 cut(s)	1600
MabI	ACCWGGT	1 cut(s)	2878
MaeII	ACGT	7 cut(s)	842, 1300, 1525, 2354, 3031, 3333, 4288
MaeIII	GTNAC	9 cut(s)	89, 318, 761, 1761, 2163, 3268, 3938, 4058, 4159
MflI	RGATCY	3 cut(s)	367, 3391, 4347
MhlI	GDGCHC	6 cut(s)	1643, 1845, 2360, 2665, 2893, 4321
MlsI	TGGCCA	1 cut(s)	4227
MluNI	TGGCCA	1 cut(s)	4227
MlyI	GAGTC	9 cut(s)	64, 1052, 1089, 1864, 1904, 2117, 2221, 2768, 3260
MmeI	TCCRAC	5 cut(s)	486, 2167, 2855, 4009, 4367
Mox20I	TGGCCA	1 cut(s)	4227
Mph1103I	ATGCAT	1 cut(s)	3151
MroXI	GAANNNNTTC	4 cut(s)	1365, 2056, 3183, 3840
MscI	TGGCCA	1 cut(s)	4227
MslI	CAYNNNNRTG	2 cut(s)	1191, 3807
Msp20I	TGGCCA	1 cut(s)	4227
MspA1I	CMGCKG	3 cut(s)	1744, 2549, 2582
MspI	CCGG	6 cut(s)	1210, 1852, 1988, 2113, 2168, 3224
MspR9I	CCNGG	7 cut(s)	1082, 1210, 2113, 2424, 2880, 3129, 4212
Mva1269I	GAATGC	2 cut(s)	218, 1120
MvaI	CCWGG	5 cut(s)	1082, 2424, 2880, 3129, 4212
MvnI	CGCG	2 cut(s)	13, 21
NciI	CCSGG	2 cut(s)	1210, 2113
NdeI	CATATG	1 cut(s)	2824
NheI	GCTAGC	1 cut(s)	2339
NlaIV	GGNNCC	7 cut(s)	6, 648, 1455, 2572, 3393, 3426, 3472
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	5 cut(s)	89, 761, 1761, 3938, 4058
NsiI	ATGCAT	1 cut(s)	3151
NspI	RCATGY	3 cut(s)	1034, 1190, 1700
PaeR7I	CTCGAG	1 cut(s)	3888
PagI	TCATGA	1 cut(s)	3745
PceI	AGGCCT	2 cut(s)	4201, 4363
PciSI	GCTCTTC	1 cut(s)	1600
PcsI	WCGNNNNNNNCGW	3 cut(s)	2899, 3037, 3046
PctI	GAATGC	2 cut(s)	218, 1120
PdmI	GAANNNNTTC	4 cut(s)	1365, 2056, 3183, 3840
PflMI	CCANNNNNTGG	2 cut(s)	890, 4223
PfoI	TCCNGGA	2 cut(s)	2111, 2422
PinAI	ACCGGT	1 cut(s)	3223
PleI	GAGTC	9 cut(s)	63, 1052, 1089, 1863, 1903, 2117, 2221, 2768, 3259
PmaCI	CACGTG	1 cut(s)	1301
PmlI	CACGTG	1 cut(s)	1301
PpsI	GAGTC	9 cut(s)	63, 1052, 1089, 1863, 1903, 2117, 2221, 2768, 3259
Ppu21I	YACGTR	1 cut(s)	1301
PpuMI	RGGWCCY	2 cut(s)	2426, 3617
PshAI	GACNNNNGTC	1 cut(s)	745
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	4321
Psp5II	RGGWCCY	2 cut(s)	2426, 3617
Psp6I	CCWGG	5 cut(s)	1080, 2422, 2878, 3127, 4210
PspCI	CACGTG	1 cut(s)	1301
PspEI	GGTNACC	1 cut(s)	89
PspFI	CCCAGC	4 cut(s)	1740, 3657, 3868, 4098
PspGI	CCWGG	5 cut(s)	1080, 2422, 2878, 3127, 4210
PspN4I	GGNNCC	7 cut(s)	6, 648, 1455, 2572, 3393, 3426, 3472
PspPI	GGNCC	8 cut(s)	102, 2426, 2628, 3407, 3617, 3884, 3982, 4214
PspPPI	RGGWCCY	2 cut(s)	2426, 3617
PstI	CTGCAG	3 cut(s)	1780, 1960, 3758
PsuI	RGATCY	3 cut(s)	367, 3391, 4347
PvuII	CAGCTG	3 cut(s)	1744, 2549, 2582
RsaI	GTAC	9 cut(s)	648, 822, 1690, 2156, 2572, 2975, 3741, 4109, 4308
RsaNI	GTAC	9 cut(s)	647, 821, 1689, 2155, 2571, 2974, 3740, 4108, 4307
RseI	CAYNNNNRTG	2 cut(s)	1191, 3807
SacI	GAGCTC	1 cut(s)	4321
SalI	GTCGAC	1 cut(s)	2753
SapI	GCTCTTC	1 cut(s)	1600
Sau96I	GGNCC	8 cut(s)	102, 2426, 2628, 3407, 3617, 3884, 3982, 4214
SchI	GAGTC	9 cut(s)	64, 1052, 1089, 1864, 1904, 2117, 2221, 2768, 3260
ScrFI	CCNGG	7 cut(s)	1082, 1210, 2113, 2424, 2880, 3129, 4212
SduI	GDGCHC	6 cut(s)	1643, 1845, 2360, 2665, 2893, 4321
SexAI	ACCWGGT	1 cut(s)	2878
SfcI	CTRYAG	5 cut(s)	204, 1776, 1941, 1956, 3754
Sfr274I	CTCGAG	1 cut(s)	3888
SinI	GGWCC	5 cut(s)	2426, 2628, 3617, 3982, 4214
SlaI	CTCGAG	1 cut(s)	3888
SmiMI	CAYNNNNRTG	2 cut(s)	1191, 3807
SmlI	CTYRAG	3 cut(s)	1119, 2936, 3888
SmoI	CTYRAG	3 cut(s)	1119, 2936, 3888
SpeI	ACTAGT	3 cut(s)	224, 3761, 3775
SseBI	AGGCCT	2 cut(s)	4201, 4363
SspI	AATATT	1 cut(s)	1654
SstI	GAGCTC	1 cut(s)	4321
StuI	AGGCCT	2 cut(s)	4201, 4363
StyD4I	CCNGG	7 cut(s)	1080, 1208, 2111, 2422, 2878, 3127, 4210
StyI	CCWWGG	2 cut(s)	78, 2631
TaiI	ACGT	7 cut(s)	845, 1303, 1528, 2357, 3034, 3336, 4291
TaqI	TCGA	6 cut(s)	423, 1393, 2505, 2754, 3040, 3889
TatI	WGTACW	2 cut(s)	820, 1688
TauI	GCSGC	1 cut(s)	3289
TscAI	CASTG	7 cut(s)	1648, 1845, 2407, 2565, 2915, 3471, 3943
TseFI	GTSAC	5 cut(s)	89, 761, 1761, 3938, 4058
Tsp45I	GTSAC	5 cut(s)	89, 761, 1761, 3938, 4058
TspGWI	ACGGA	1 cut(s)	4095
TspRI	CASTG	7 cut(s)	1648, 1845, 2407, 2565, 2915, 3471, 3943
Van91I	CCANNNNNTGG	2 cut(s)	890, 4223
VneI	GTGCAC	1 cut(s)	1841
VpaK11BI	GGWCC	5 cut(s)	2426, 2628, 3617, 3982, 4214
XagI	CCTNNNNNAGG	2 cut(s)	77, 1046
XapI	RAATTY	5 cut(s)	1204, 1621, 2316, 2946, 4279
XbaI	TCTAGA	2 cut(s)	2048, 3647
XceI	RCATGY	3 cut(s)	1034, 1190, 1700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1748
XhoI	CTCGAG	1 cut(s)	3888
XmiI	GTMKAC	4 cut(s)	16, 552, 1292, 2754
XmnI	GAANNNNTTC	4 cut(s)	1365, 2056, 3183, 3840
ZraI	GACGTC	1 cut(s)	3032
Zsp2I	ATGCAT	1 cut(s)	3151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.