Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

66772759 .. 66779303

Gene Structure 6545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41419

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3627 bp

ATGGCTCCGTCGCGTAGACGCGGAGCGAGCAAGGCTAAGAGCAAGGCGCAGTTGAGTCTCGGCGATCTTGTCCTCGCCAAGGTCAAGGGTCACCCCTTTTGGCCCGCCAAGATCAGCAAGCCTGAAGATTGGGAGAAAGTCCCTGATCCTAAGAAGTATTTTGTCCAATTTTTTGGAACAGAAGAGATAGCTTTTGTTGCACCTGTAGATATTCAGGCATTCACTAGTGAGGCAAAAAGTAAAATATCAGCTCGCTGTCAAGGCAAAACAAAGTATTTTTCCCAAGCTGTTAAGGAAATATGTGAAGCATTTGATGAGTTACAGAAAAAGAAATCAAATGATGTGAGGGTTGATACTGATAGATCAGATCTTGGATGTGATGCTCCATCTGTTGACGGGGTAGAGGATGATGTGGTTAATGTCGAGATAAAAGATGATAAGGGTGCAGTCGGTTCTGATGGAGATACAGTTAAGGAAGAAGGCACAGATGATTTTGGCTCTAAGTTGGAGCGTTGTTCACAGATACGAGGTGAAAATGATACTGAAGATGTAGACCCATCTACCTCTTGTGGAGCAAAGGAGAGTTCATCTCCCGTCTTTTCTTCTGAGGAAAATAAGAAAATGTCCTCAGTTGTTCACCCTAAGGTACCAAAGACATCCAATTCTTCTCATTTGAAGAAAGAAGTTTCTGATTATAAGTATGAAGATGATGATATTCGCACCAAGAAACATGGTGAGGGACAGAGGTCATTAGTAAATGGTCACAAGATGACAAAGATGGGTAGTGGATCAAAGAGGAGAAGTGATGGCATGGTTGAAGTACACAAGGGCAGCTCTTTAACGTCATTGAAGGAAGATGGCTCTGTTGGTTGTGTTGATCGCCCACAATCTGGTGATCAATTGAGAGATGGAACAACAGGCAAAACTATCTCTGGTGGCAATAAAAGGAAACTATCCCCAGATTCGCTTAAACCTGAAACTGGAATCAGGGATGGGAAAAGGACGAAAGACCTGCTTAAAGCCAAAAAGCATGTCAAAGTCCTAGATGAGGCAAAGGACTCTGTGGATGATCTTGAAGCCCAGGCCAGAGATAGACTCTCTGGAAGAACAAAGAATGCTCAAGTTGGGCGTGGAAAGCCTGATTTGGGAGCAAATGATATTTCACATCTGTCCAAAAAGTCAAAGCATGTTGATGCAGGGGAAAATACCCGGCGGGGTTCATTCTCAAAAAGTCCTCCGAGTTCTGATGTTGCTGATCGGAAGACGGTAAAAAAATTAGATTCAAAAATGTCTACTTCACGTGTTAAACCAGAGAACATTCTCGTATCCAAATCCCAAAATGTCAACGCTTCTGGTGATGAAGCTGTTCTACCCCTAGCAAAGCGTCGTCGTCGAGCGATGGAGGCTATGTCTGATTCTGACACTTTGGTTTCTGATGAGAAAATGGAAAAGGCTCCTGTTCAGAAGAATAATATAGCACGGTCTAGTGATGTCAAAGTTTCAGCACCTCAGACACAGAGAAAACGTAGGGCTGTATGCCTTTATGACGATGAGGAGGAGGAAGAAAAACCCAAAACACCCGTTCATGGAGGCTCTTCCCGAAATGTTAAAGCACCTTCAAATTCAGATGCTATAAAGAGCACTGGTGAAAATATTGAGAGTTCTGATACTGCTCTACACAGTGCAAAACATGCTACTGAAGTTCATGGCAGCCATACAAAGGAATCATCTTCCCAGCTGAAGAATGGGTCTCTGTCACCTAGCAAACCTGCAGTAGATGAGAAGAGGTCTCAAAAGCAAACTCAAACTGATGAAAAGAGGCTTGAAAAGGCAGTGCACATCTACCGGAGTCCAGCAAAATTAGAACCTGACCAGCAGGTGTCCAAAGAGTCAAAACCAACCTTGACTTCTCCTAAGAAGTCTCCTATGTTGGCTACAGCTACTAAACCTGCAGTTGAACAACAAAAAGCCACAAAAGCTCCAGTTAAAGGCTCTAATACTGCAACTCAGAAAAAGGGTCAGGCTGCATCTGGCAACAGTTCTAGAACAGTTTCTAATAGTGTGGTTTCTTCTCAAAAACCTAAACCTACTGCAAGACCAATATCCCGGATCAATGACTCCGCTATTTTACAGGAAAATACCATAGAGGACAATTTGTTACCCGCGGAAAGAATGGAAGTTGGAAAAGAAGATAAAAGTGCCTTATTGGTCGATTCTAAGACTCTGGAATCTTCTTCGTCTATGAAGCATCTAATTGCAGTTGCACAAGCAAAAAGGAAACAAACGCAGTCGCACAACTACTTCTTTGAAATTTCCAGTTCTGCTTTTTTATCTAGCACAGATGGGACGTGCCCCAGTCCTTTGGCAGTTCAGGGTCTTTATCCCATTAGCAACAGTGCATTGCAGGCAGATATTCCAGGACCTATTCAACCCACCACAAACATAGCTTCTCCATCTACTCATAGTCGCCCTTCTGCATTACAAAATCAACTAGACATCGAGGACATTTCAGAAAGAAGAGTTAGTTCTGGGCATCAGACAGCTGGAGGATCACTAAGTGGTGGTACCGAGGCAGCTGTTGCTCGTGATGCTTTTGAAGGAATGATAGAAACTTTGTCAAGGACCAAGGAAAGTATTAGTCGGGCAACTCGCTGTGCCCTTGATTGTGCCAAGTATGGTATAGCTAACGAGGTTGTGGAACTGCTTATCCGAAAGCTGGAGAGTGAGCCTAGTTTTCATCGTAAGGTCGACCTGTTCTTTCTTGTGGACTCCATCACACAAATCTCACATACTCAAAAAGGTATTGCTGGAGCTTCATATGTTCCAACTGTTCAAGCAGCATTGCCACGGCTTCTAGGTGCTGCTGCTCCACCTGGTTCTGGTGCTCGTGAGAATCGTCGTCAGTGTCATAAGGTTTTACGGCTCTGGCTTGAGAGGAAAATTTTTCCACAAGCAGTTCTTCGTCGGTACATGGATGACATTGGAGTTTCAAATGATGATACAACTGCTGGTTTCTCTCTTAGACGTCCATCTCGATCAGAGCGTGCTATTGATGATCCAATCAGGGAAATGGAAGGAATGTTTGTGGATGAGTATGGCAGCAATGCTACATTTCAGTTGCCCGGATTTCTATCTTCTCATGCATTTGAAGATGATGATGATGATGATGAAGAAGAAGTTCCAAGCTGTTCATACAAGGAGGCTAGTCATCCATCACCGGTAGAAACTACCCATGCCTCTGGGGAGTCAGAAACCTATGCTGTTACTCCAAATGATAGGCGGCATTGCATCTTAGAGGATGTGGACGGTGAGCTTGAAATGGAAGACGTTTCTGGACACCCGAAGGATGAAAGACCGTCATCTGTTAATGGTTCTTTTGAAATAGATCCACCACAGCAAGGGCCACATAGGGTCATGGAACCAGTTTTAAATGCTTGCACTGACTTGCCCCCACTTCCAGAGGGTTCCCCACCTTTGCCTCTTGATTCTCCTCCTCCACCCCCTCCTTTGCCTCCCTCACCACCACCACCACCTCCCCACTGTCTCCATCACCGCCACCACCACCTCCGCCTCCCCCCTCACAGCCTCCTCCTCCTCTACCACTATCAGGTCCTCCACATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1208

Amino Acids

131.73

Weight (kDa)

7.42

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	21 - 104	1.2e-18	PWWP domain
CTK3	PF12243	862 - 981	2.4e-07	CTD kinase subunit gamma CTK3
CID	PF04818	864 - 988	1e-15	CID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AarI	CACCTGC	1 cut(s)	1867
AatII	GACGTC	1 cut(s)	3028
Acc36I	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
Acc65I	GGTACC	2 cut(s)	646, 2564
AccB1I	GGYRCC	2 cut(s)	646, 2564
AccB7I	CCANNNNNTGG	1 cut(s)	890
AccI	GTMKAC	4 cut(s)	16, 552, 1292, 2748
AccII	CGCG	3 cut(s)	13, 21, 2165
AciI	CCGC	9 cut(s)	21, 105, 1213, 2121, 2163, 2165, 3280, 3553, 3568
AclWI	GGATC	6 cut(s)	140, 796, 2117, 2557, 3050, 3380
AcsI	RAATTY	3 cut(s)	1621, 2310, 2940
AcuI	CTGAAG	4 cut(s)	144, 564, 1719, 1760
AcvI	CACGTG	1 cut(s)	1301
AcyI	GRCGYC	1 cut(s)	3025
AdeI	CACNNNGTG	1 cut(s)	2558
AfaI	GTAC	4 cut(s)	648, 822, 2566, 2969
AflIII	ACRYGT	1 cut(s)	1300
AgeI	ACCGGT	1 cut(s)	3217
AhlI	ACTAGT	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	2349
AjnI	CCWGG	3 cut(s)	1080, 2416, 2872
AjuI	GAANNNNNNNTTGG	2 cut(s)	1891, 1923
AloI	GAACNNNNNNTCC	2 cut(s)	2691, 2723
Alw21I	GWGCWC	3 cut(s)	1643, 1839, 2887
Alw26I	GTCTC	5 cut(s)	62, 1755, 1794, 1926, 3548
Alw44I	GTGCAC	1 cut(s)	1835
AlwI	GGATC	6 cut(s)	140, 796, 2117, 2557, 3050, 3380
AoxI	GGCC	3 cut(s)	101, 1083, 3401
ApaLI	GTGCAC	1 cut(s)	1835
ApeKI	GCWGC	8 cut(s)	831, 1710, 2024, 2573, 2837, 2861, 2864, 3099
ApoI	RAATTY	3 cut(s)	1621, 2310, 2940
ArsI	GACNNNNNNTTYG	2 cut(s)	1017, 1049
AsiGI	ACCGGT	1 cut(s)	3217
Asp700I	GAANNNNTTC	3 cut(s)	1365, 2050, 3177
Asp718I	GGTACC	2 cut(s)	646, 2564
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	5 cut(s)	102, 2420, 2622, 3401, 3610
AsuC2I	CCSGG	3 cut(s)	1210, 2107, 3123
AvaII	GGWCC	3 cut(s)	2420, 2622, 3610
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	3 cut(s)	1839, 2354, 2659
BanI	GGYRCC	2 cut(s)	646, 2564
BarI	GAAGNNNNNNTAC	2 cut(s)	1353, 1385
BauI	CACGAG	2 cut(s)	2583, 2886
BbrPI	CACGTG	1 cut(s)	1301
BbsI	GAAGAC	2 cut(s)	1268, 3330
Bbv12I	GWGCWC	3 cut(s)	1643, 1839, 2887
BbvI	GCAGC	8 cut(s)	843, 1722, 2011, 2585, 2848, 2849, 2851, 3111
BceAI	ACGGC	2 cut(s)	2864, 2936
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	3 cut(s)	1082, 2418, 2874
BciVI	GTATCC	1 cut(s)	1336
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	3 cut(s)	1210, 2107, 3123
BcoDI	GTCTC	5 cut(s)	62, 1755, 1794, 1926, 3548
BcuI	ACTAGT	1 cut(s)	224
BfmI	CTRYAG	4 cut(s)	204, 1770, 1935, 1950
BfuAI	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
BfuI	GTATCC	1 cut(s)	1336
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	9 cut(s)	832, 1711, 2025, 2574, 2838, 2862, 2865, 3100, 3281
BlsI	GCNGC	9 cut(s)	833, 1712, 2026, 2575, 2839, 2863, 2866, 3101, 3282
Bme1390I	CCNGG	6 cut(s)	1082, 1210, 2107, 2418, 2874, 3123
Bme18I	GGWCC	3 cut(s)	2420, 2622, 3610
BmgBI	CACGTC	1 cut(s)	2349
BmgT120I	GGNCC	5 cut(s)	102, 2420, 2622, 3401, 3610
BmiI	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
BmrFI	CCNGG	6 cut(s)	1082, 1210, 2107, 2418, 2874, 3123
BmrI	ACTGGG	1 cut(s)	2349
BmsI	GCATC	8 cut(s)	370, 1183, 1618, 2036, 2257, 2542, 2578, 3297
BmuI	ACTGGG	1 cut(s)	2349
BoxI	GACNNNNGTC	1 cut(s)	745
BpiI	GAAGAC	2 cut(s)	1268, 3330
BplI	GAGNNNNNCTC	4 cut(s)	574, 606, 1080, 1112
BpmI	CTGGAG	4 cut(s)	1965, 2565, 2738, 2829
BpuEI	CTTGAG	2 cut(s)	1104, 2951
BpuMI	CCSGG	3 cut(s)	1210, 2107, 3123
BsaAI	YACGTR	1 cut(s)	1301
BsaBI	GATNNNNATC	1 cut(s)	3130
BsaHI	GRCGYC	1 cut(s)	3025
BsaI	GGTCTC	2 cut(s)	1755, 1794
BsaJI	CCNNGG	6 cut(s)	78, 1080, 2163, 2568, 2625, 2846
BsaWI	WCCGGW	2 cut(s)	1845, 3217
BsaXI	ACNNNNNCTCC	6 cut(s)	453, 483, 1394, 1424, 1963, 1993
Bse118I	RCCGGY	1 cut(s)	3217
Bse1I	ACTGG	6 cut(s)	985, 1648, 1982, 2316, 2355, 3422
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	4 cut(s)	2399, 2840, 3109, 3283
Bse8I	GATNNNNATC	1 cut(s)	3130
BseBI	CCWGG	3 cut(s)	1082, 2418, 2874
BseDI	CCNNGG	6 cut(s)	78, 1080, 2163, 2568, 2625, 2846
BseJI	GATNNNNATC	1 cut(s)	3130
BseMI	GCAATG	4 cut(s)	2399, 2840, 3109, 3283
BseMII	CTCAG	4 cut(s)	597, 642, 1523, 2021
BseNI	ACTGG	6 cut(s)	985, 1648, 1982, 2316, 2355, 3422
BseRI	GAGGAG	8 cut(s)	811, 1568, 1571, 3480, 3483, 3578, 3581, 3584
BseSI	GKGCMC	3 cut(s)	1839, 2354, 2659
BseXI	GCAGC	8 cut(s)	843, 1722, 2011, 2585, 2848, 2849, 2851, 3111
BseYI	CCCAGC	1 cut(s)	1734
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	3 cut(s)	13, 21, 2165
BshFI	GGCC	3 cut(s)	103, 1085, 3403
BshNI	GGYRCC	2 cut(s)	646, 2564
BshTI	ACCGGT	1 cut(s)	3217
BsiHKAI	GWGCWC	3 cut(s)	1643, 1839, 2887
BsiSI	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
BslFI	GGGAC	3 cut(s)	125, 753, 2359
BsmAI	GTCTC	5 cut(s)	62, 1755, 1794, 1926, 3548
BsmFI	GGGAC	3 cut(s)	125, 753, 2359
BsmI	GAATGC	2 cut(s)	218, 1120
BsnI	GGCC	3 cut(s)	103, 1085, 3403
Bso31I	GGTCTC	2 cut(s)	1755, 1794
Bsp1286I	GDGCHC	5 cut(s)	1643, 1839, 2354, 2659, 2887
BspACI	CCGC	9 cut(s)	21, 105, 1213, 2121, 2163, 2165, 3280, 3553, 3568
BspANI	GGCC	3 cut(s)	103, 1085, 3403
BspCNI	CTCAG	4 cut(s)	598, 641, 1522, 2020
BspFNI	CGCG	3 cut(s)	13, 21, 2165
BspLI	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
BspMAI	CTGCAG	2 cut(s)	1774, 1954
BspMI	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
BspPI	GGATC	6 cut(s)	140, 796, 2117, 2557, 3050, 3380
BspQI	GCTCTTC	1 cut(s)	1600
BspT107I	GGYRCC	2 cut(s)	646, 2564
BspTNI	GGTCTC	2 cut(s)	1755, 1794
BsrDI	GCAATG	4 cut(s)	2399, 2840, 3109, 3283
BsrFI	RCCGGY	1 cut(s)	3217
BsrI	ACTGG	6 cut(s)	985, 1648, 1982, 2316, 2355, 3422
BssAI	RCCGGY	1 cut(s)	3217
BssECI	CCNNGG	6 cut(s)	78, 1080, 2163, 2568, 2625, 2846
BssNI	GRCGYC	1 cut(s)	3025
BssSI	CACGAG	2 cut(s)	2583, 2886
BssT1I	CCWWGG	2 cut(s)	78, 2625
Bst2BI	CACGAG	2 cut(s)	2583, 2886
Bst2UI	CCWGG	3 cut(s)	1082, 2418, 2874
Bst6I	CTCTTC	4 cut(s)	177, 1600, 1778, 2512
BstACI	GRCGYC	1 cut(s)	3025
BstAPI	GCANNNNNTGC	2 cut(s)	1691, 2579
BstBAI	YACGTR	1 cut(s)	1301
BstC8I	GCNNGC	7 cut(s)	28, 105, 119, 253, 2406, 3045, 3436
BstDSI	CCRYGG	2 cut(s)	2163, 2846
BstEII	GGTNACC	1 cut(s)	89
BstENI	CCTNNNNNAGG	2 cut(s)	77, 1046
BstFNI	CGCG	3 cut(s)	13, 21, 2165
BstHHI	GCGC	1 cut(s)	49
BstMAI	GTCTC	5 cut(s)	62, 1755, 1794, 1926, 3548
BstNI	CCWGG	3 cut(s)	1082, 2418, 2874
BstNSI	RCATGY	3 cut(s)	1034, 1190, 1694
BstPAI	GACNNNNGTC	1 cut(s)	745
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	6 cut(s)	1080, 1208, 2105, 2416, 2872, 3121
BstSFI	CTRYAG	4 cut(s)	204, 1770, 1935, 1950
BstSLI	GKGCMC	3 cut(s)	1839, 2354, 2659
BstUI	CGCG	3 cut(s)	13, 21, 2165
BstV1I	GCAGC	8 cut(s)	843, 1722, 2011, 2585, 2848, 2849, 2851, 3111
BstV2I	GAAGAC	2 cut(s)	1268, 3330
BstX2I	RGATCY	2 cut(s)	367, 3385
BstXI	CCANNNNNNTGG	3 cut(s)	173, 2362, 3239
BstYI	RGATCY	2 cut(s)	367, 3385
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	1336
BsuRI	GGCC	3 cut(s)	103, 1085, 3403
BtgI	CCRYGG	2 cut(s)	2163, 2846
BtgZI	GCGATG	1 cut(s)	1412
BtrI	CACGTC	1 cut(s)	2349
BtsI	GCAGTG	1 cut(s)	1839
BtsIMutI	CAGTG	7 cut(s)	1641, 1687, 1839, 2401, 2909, 3438, 3538
BveI	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
Cac8I	GCNNGC	7 cut(s)	28, 105, 119, 253, 2406, 3045, 3436
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	3217
Cfr13I	GGNCC	5 cut(s)	102, 2420, 2622, 3401, 3610
Cfr42I	CCGCGG	1 cut(s)	2166
CseI	GACGC	2 cut(s)	27, 1373
CsiI	ACCWGGT	1 cut(s)	2872
Csp6I	GTAC	4 cut(s)	647, 821, 2565, 2968
CspAI	ACCGGT	1 cut(s)	3217
CspCI	CAANNNNNGTGG	1 cut(s)	3605
CviQI	GTAC	4 cut(s)	647, 821, 2565, 2968
DraI	TTTAAA	1 cut(s)	3429
DraIII	CACNNNGTG	1 cut(s)	2558
Eam1104I	CTCTTC	4 cut(s)	177, 1600, 1778, 2512
EarI	CTCTTC	4 cut(s)	177, 1600, 1778, 2512
EciI	GGCGGA	1 cut(s)	3557
Eco130I	CCWWGG	2 cut(s)	78, 2625
Eco31I	GGTCTC	2 cut(s)	1755, 1794
Eco47I	GGWCC	3 cut(s)	2420, 2622, 3610
Eco57I	CTGAAG	4 cut(s)	144, 564, 1719, 1760
Eco72I	CACGTG	1 cut(s)	1301
Eco81I	CCTNAGG	1 cut(s)	642
Eco91I	GGTNACC	1 cut(s)	89
EcoNI	CCTNNNNNAGG	2 cut(s)	77, 1046
EcoO109I	RGGNCCY	2 cut(s)	2420, 3610
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	3 cut(s)	1080, 2416, 2872
EcoT14I	CCWWGG	2 cut(s)	78, 2625
EcoT22I	ATGCAT	1 cut(s)	3145
ErhI	CCWWGG	2 cut(s)	78, 2625
FalI	AAGNNNNNCTT	4 cut(s)	999, 1031, 2943, 2975
FaqI	GGGAC	3 cut(s)	125, 753, 2359
FauI	CCCGC	3 cut(s)	112, 1206, 2170
FauNDI	CATATG	1 cut(s)	2818
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	4 cut(s)	16, 552, 1292, 2748
Fnu4HI	GCNGC	9 cut(s)	832, 1711, 2025, 2574, 2838, 2862, 2865, 3100, 3281
Fsp4HI	GCNGC	9 cut(s)	832, 1711, 2025, 2574, 2838, 2862, 2865, 3100, 3281
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	9 cut(s)	832, 1711, 2025, 2574, 2838, 2862, 2865, 3100, 3281
GsaI	CCCAGC	1 cut(s)	1738
GsuI	CTGGAG	4 cut(s)	1965, 2565, 2738, 2829
HaeIII	GGCC	3 cut(s)	103, 1085, 3403
HapII	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
HgaI	GACGC	2 cut(s)	27, 1373
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	3025
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	3 cut(s)	394, 1345, 2749
HindII	GTYRAC	3 cut(s)	394, 1345, 2749
HpaII	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
Hpy99I	CGWCG	6 cut(s)	13, 1389, 1392, 1395, 2901, 2967
HpyAV	CCTTC	7 cut(s)	473, 844, 1626, 2481, 2591, 3068, 3337
HpyCH4IV	ACGT	6 cut(s)	842, 1300, 1525, 2348, 3025, 3327
HpySE526I	ACGT	6 cut(s)	842, 1300, 1525, 2348, 3025, 3327
Hsp92I	GRCGYC	1 cut(s)	3025
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	2 cut(s)	650, 2568
Ksp22I	TGATCA	1 cut(s)	895
KspI	CCGCGG	1 cut(s)	2166
LguI	GCTCTTC	1 cut(s)	1600
Lsp1109I	GCAGC	8 cut(s)	843, 1722, 2011, 2585, 2848, 2849, 2851, 3111
LweI	GCATC	8 cut(s)	370, 1183, 1618, 2036, 2257, 2542, 2578, 3297
MabI	ACCWGGT	1 cut(s)	2872
MaeII	ACGT	6 cut(s)	842, 1300, 1525, 2348, 3025, 3327
MaeIII	GTNAC	6 cut(s)	89, 318, 761, 1755, 2157, 3262
MfeI	CAATTG	1 cut(s)	899
MflI	RGATCY	2 cut(s)	367, 3385
MhlI	GDGCHC	5 cut(s)	1643, 1839, 2354, 2659, 2887
MlyI	GAGTC	9 cut(s)	64, 1052, 1089, 1858, 1898, 2111, 2215, 2762, 3254
MmeI	TCCRAC	3 cut(s)	486, 2161, 2849
Mph1103I	ATGCAT	1 cut(s)	3145
MroXI	GAANNNNTTC	3 cut(s)	1365, 2050, 3177
MslI	CAYNNNNRTG	1 cut(s)	1191
MspA1I	CMGCKG	4 cut(s)	1738, 2165, 2543, 2576
MspI	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
MspR9I	CCNGG	6 cut(s)	1082, 1210, 2107, 2418, 2874, 3123
MunI	CAATTG	1 cut(s)	899
Mva1269I	GAATGC	2 cut(s)	218, 1120
MvaI	CCWGG	3 cut(s)	1082, 2418, 2874
MvnI	CGCG	3 cut(s)	13, 21, 2165
NciI	CCSGG	3 cut(s)	1210, 2107, 3123
NdeI	CATATG	1 cut(s)	2818
NlaIV	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	3 cut(s)	89, 761, 1755
NsiI	ATGCAT	1 cut(s)	3145
NspI	RCATGY	3 cut(s)	1034, 1190, 1694
PaqCI	CACCTGC	1 cut(s)	1867
PciSI	GCTCTTC	1 cut(s)	1600
PcsI	WCGNNNNNNNCGW	3 cut(s)	2893, 3031, 3040
PctI	GAATGC	2 cut(s)	218, 1120
PdmI	GAANNNNTTC	3 cut(s)	1365, 2050, 3177
PfeI	GAWTC	9 cut(s)	962, 984, 1280, 1415, 1724, 2213, 2228, 2893, 3485
PflMI	CCANNNNNTGG	1 cut(s)	890
PfoI	TCCNGGA	2 cut(s)	2105, 2416
PinAI	ACCGGT	1 cut(s)	3217
PkrI	GCNGC	9 cut(s)	833, 1712, 2026, 2575, 2839, 2863, 2866, 3101, 3282
PleI	GAGTC	9 cut(s)	63, 1052, 1089, 1857, 1897, 2111, 2215, 2762, 3253
PmaCI	CACGTG	1 cut(s)	1301
PmlI	CACGTG	1 cut(s)	1301
PpsI	GAGTC	9 cut(s)	63, 1052, 1089, 1857, 1897, 2111, 2215, 2762, 3253
Ppu21I	YACGTR	1 cut(s)	1301
PpuMI	RGGWCCY	2 cut(s)	2420, 3610
PshAI	GACNNNNGTC	1 cut(s)	745
PsiI	TTATAA	1 cut(s)	696
Psp5II	RGGWCCY	2 cut(s)	2420, 3610
Psp6I	CCWGG	3 cut(s)	1080, 2416, 2872
PspCI	CACGTG	1 cut(s)	1301
PspEI	GGTNACC	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	1734
PspGI	CCWGG	3 cut(s)	1080, 2416, 2872
PspN4I	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
PspPI	GGNCC	5 cut(s)	102, 2420, 2622, 3401, 3610
PspPPI	RGGWCCY	2 cut(s)	2420, 3610
PstI	CTGCAG	2 cut(s)	1774, 1954
PsuI	RGATCY	2 cut(s)	367, 3385
PvuII	CAGCTG	3 cut(s)	1738, 2543, 2576
RsaI	GTAC	4 cut(s)	648, 822, 2566, 2969
RsaNI	GTAC	4 cut(s)	647, 821, 2565, 2968
RseI	CAYNNNNRTG	1 cut(s)	1191
SacII	CCGCGG	1 cut(s)	2166
SalI	GTCGAC	1 cut(s)	2747
SapI	GCTCTTC	1 cut(s)	1600
SatI	GCNGC	9 cut(s)	832, 1711, 2025, 2574, 2838, 2862, 2865, 3100, 3281
Sau96I	GGNCC	5 cut(s)	102, 2420, 2622, 3401, 3610
SchI	GAGTC	9 cut(s)	64, 1052, 1089, 1858, 1898, 2111, 2215, 2762, 3254
ScrFI	CCNGG	6 cut(s)	1082, 1210, 2107, 2418, 2874, 3123
SduI	GDGCHC	5 cut(s)	1643, 1839, 2354, 2659, 2887
SexAI	ACCWGGT	1 cut(s)	2872
SfaNI	GCATC	8 cut(s)	370, 1183, 1618, 2036, 2257, 2542, 2578, 3297
SfcI	CTRYAG	4 cut(s)	204, 1770, 1935, 1950
Sfr303I	CCGCGG	1 cut(s)	2166
SgrBI	CCGCGG	1 cut(s)	2166
SinI	GGWCC	3 cut(s)	2420, 2622, 3610
SmiMI	CAYNNNNRTG	1 cut(s)	1191
SmlI	CTYRAG	2 cut(s)	1119, 2930
SmoI	CTYRAG	2 cut(s)	1119, 2930
SpeI	ACTAGT	1 cut(s)	224
SsiI	CCGC	9 cut(s)	21, 105, 1213, 2121, 2163, 2165, 3280, 3553, 3568
SspI	AATATT	1 cut(s)	1654
StyD4I	CCNGG	6 cut(s)	1080, 1208, 2105, 2416, 2872, 3121
StyI	CCWWGG	2 cut(s)	78, 2625
TaiI	ACGT	6 cut(s)	845, 1303, 1528, 2351, 3028, 3330
TaqI	TCGA	6 cut(s)	423, 1393, 2211, 2499, 2748, 3034
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	3283
TfiI	GAWTC	9 cut(s)	962, 984, 1280, 1415, 1724, 2213, 2228, 2893, 3485
TscAI	CASTG	7 cut(s)	1648, 1687, 1839, 2401, 2909, 3445, 3545
TseFI	GTSAC	3 cut(s)	89, 761, 1755
TseI	GCWGC	8 cut(s)	831, 1710, 2024, 2573, 2837, 2861, 2864, 3099
Tsp45I	GTSAC	3 cut(s)	89, 761, 1755
TspRI	CASTG	7 cut(s)	1648, 1687, 1839, 2401, 2909, 3445, 3545
Van91I	CCANNNNNTGG	1 cut(s)	890
VneI	GTGCAC	1 cut(s)	1835
VpaK11BI	GGWCC	3 cut(s)	2420, 2622, 3610
XagI	CCTNNNNNAGG	2 cut(s)	77, 1046
XapI	RAATTY	3 cut(s)	1621, 2310, 2940
XbaI	TCTAGA	1 cut(s)	2042
XceI	RCATGY	3 cut(s)	1034, 1190, 1694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1742
XmiI	GTMKAC	4 cut(s)	16, 552, 1292, 2748
XmnI	GAANNNNTTC	3 cut(s)	1365, 2050, 3177
ZraI	GACGTC	1 cut(s)	3026
Zsp2I	ATGCAT	1 cut(s)	3145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.