Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

54466259 .. 54470404

Gene Structure 4146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0373800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4146 bp

ATGAAGGTTCTTTACTGGAATATTAGGGGAATAGGAAACAATGACTCTCAATCCGAGCTTTCCAATATTTGCCGTATTCACAAACCAGATCTTGTTTGCATTGCTGAGCCAAAGGTAAAGTTCACCTCAATTTCAGCAGTTTTTTGGTCTTCTTTGAATTTGGATCTTGTTGCAACTAATGATTGTGGTGCGGCTCTTCCAAATCTTTGGTTGTTGAAGAGTTTTCATATTCCTAATCCGACGATTATTTCCAACTCCGAGCAGCAGGTTACAATTCAGGTTCCTCTTGATAATGAGCCCAGTCAACTTTCTTTTGTATATGCTTCTACCTCTTATATCAAACGCAGGGATTTATGGCAACATCTTTATGCTCTTCGTCCTCAAACGTCTATCCCATGGATGGTAATTGGTGACTTCAACGCTGTGTTAGGAGCCCACGAGAAATCGGGAGGCCCATCTCCTTCTCGCCTCTCTTGTGCAGATTTTCAAAGTATGTCAGATACTTGTGATTTTGTTCATTTGGATACTTCAGGTTTGTTCTTTACTTGGTCAAATGGTTGGAGCACCCGTGGCCATGTTGAGCTTCGTCTGGACAGATGTCTCTGTGATACCACTTGGTTTGAAGCTTGGCCTTTTACTAGCTGTGTTGCTCTTCCCCGTGTTGTTTCTGATCATTCTCCACTGATTTTCTCTGCTTCAAAACTCTCCCCAAGTGGTCCTAAGCCTTTCAGGTTTCAGTCTATGTGGTTGCAGCATCCAAATTTTCATGCAGTAGTGTCTAATTGCTGGAGTTCCTTTCAACTTTGTGGCTGCCCAATGTTTGTTGCTTTGCAGAAACTAAAGGCTCTGAAACAGTGTCTGCGTGATTGGAACAAAGCGGTCTTTGGTAATGTCCATCAAAACGTTGCTGCTGCTCGCGAAAATCTAGTCACCATACAACATGATATCGCGACCCGTGGCATGACTGATCAAAAGTTTGAGGATGAGATTGCTGCAAAGTCTTCAGTCTTAAATGCTCTCAGGTTGCAAGAAACCTTTTGGAAAGATAGAGCTCGAGTTAAGTGGCTTACTGATGGGGATCGAAGTACATCTTTTTTCCATACTTATGCCAAGGTTCGTGCAGCAAAGGGTCAAATGTCTTCTATCCGTGTGGGGGAGCGGTTACTTACTGACCCTTCAGACATTGCAGCACATACTGTGGCTTTTTATCAGAATCTCTATGATATTTCCTCCCCTTCTACAAACGTGGATGAGGTTTGTTCTGTTATCCCATCTTTGGTGACAGACGATGAAAATGTGGTGCTATCTGCAATTCCTACATCTGAGGAAATTAGAAACGCAGTTTTTTCTATGGATGGTTCTAGTGCTCCAGGGCCTGATGGTTTTTCAGGGTCTTTTTATCATGCTTGTTGGGATATTGTTGGTACTGATGTGGTGGCATGTGTTCGTCAATTTTTTCTTCAAAACTGGATCCTCCCCAACATGAATTGCAATTTTTTAGTTCTCATTCCAAAAGTCCCAAATGCTCAACTTATTACTCAGTTTCGCCCAATTGCCTTAGCCAATTTTCTCTTCAAGATCATTCCGAAGATTTTGGCTTCTCGCTTGGGGTCTATTGCTGCACGCATAATTTCTCCTCAGCAATCTGCCTTCTTACCTGGTAGACGTATCAATCACTGTATTGGTATGGTTTCGGAATGTTTTAACTTATTGGACCGAAAGGCTTATGGTGGAAATGTGGGAATCAAAGTGGATATAGCAAAGGCATTTGACACTCTGAATTGGGATTTTCTGCTCCGAGTTTTAAGCAATTTTGGGTTCTCTCCTACTTTCACTAGTTGGGTCAGCTCTATTCTTTACTCAGCTAGATTATCTCTTTTAATCAATGGCTCTCCTCAAGGTTTTTTTAAGTGTGCTCGTGGTGTTAGACAAGGAGATCCTCTTTCTCCACTCTTATTCTGCCTTGCAGAGGAGGCTCTCAGCCGGGGTCTTCACCTACTTCTCCAAACCCGTCAATTGAAGCCAATTTCTTTTCCCAGAAATTGCACTGCACCGTCTCATGTGTTATATGCAGATGACCTCATGGTGTTTTGCCGTGGGGACAAAAACTCTCTTAAACGTCTGCGTGGGTTTTTTGACCGTTATAGTGCAGCTTCAGGGCAATTCATTAATGCGGAGAAAAGTACTTTCTATCTTGGAGTTAGGTCTCGTCATAGGAAAGGTACAGTTCAACGTATTTTGGGTTTTCATGCAGGTCGTCTACCTTTTATTTATCTAGGAGTTCCTATATTTTGTGGAAAACCCCGCAGCTGTCATCTCCAAGTTATTGCCGATAGAGCTAAGTCAAGGTTAATGGGTTGGCAGGGGAGGCTTCTCTCTATGGCTGGGCGTACTCAACTTGTGCAATCTGTTTTTCAGAGTATGCTTCTTCATAGTTTTTCAGTGTATCAATGGCCTGCTTACCTTGTGAAGAAGTTATCTACTTGGGCGCGTAATTTTATATGGTCCGGAAATATTGAGACTCGGAAAATTGTCACTGTTGCTTGGACTCAAGTTTGTGCTCCGAAAAAAGAGGGCGGGGTTGGTATTCGTGACCTGGCAACTCTTAATTCTGCGGCTGTTCTAAGGTTTGCATGGAACTCTTTCACTTCTTTGAATCAATGGGGTGATTATATGCGAACTCGTTACCCTATTGTATCTAGTTCCAAAGTGAGTTATCGCAAATCATCAATCTGGCCAGGCTTCCGTTCTATTGCTCTTCATATCACCCACAATTGTCGTTGGATTATTGGAGATGGTCGTTCAGTGTCCTTTTGGAAAGATAAATGGCTTCAGGATCCAATTTTGAAAATTTTGGGTTTTTTCGACTGGTCAGGATTCAGTGATTTACGAGTGGCAGATTTCATCTCAGATCAGTCTTGGCAGTTCCCCTCTTTTTTCCTAGATACCTTTCCAGACTTGTACAGAAAAATTTCTGATATTTGTCTCCCTTTAGACAAAGAACCTGATATGCTAATTTGGGAGTCTACAGCCTCTGGAGAGTTATCTTTCACTAACTCTTATAACTTGCTTAGACGTCACTTTATTTTGAGAGACTGGGCTTCTACTATTTGGCATTCCTTCATTCCTCCGCGCTATTCTTTCTTGGCTTGGAGGATTCTCCTTGATCGCTTGCCCACTGATGATCGGTTGAAAAGAGGTGGGATTCCGGTTGTGTCCATCTGCCAATTATGCAACAGTTCGGCAGAGTCAGCGTTGCACCTATTTTTACATTGTCCTTTTTCCCAACATCTTTGGGGATGGCTGGCAACTCAGTTTGGAACCTCACTTCCTGCTTATAGCTCTCTGTTGGATTTTTGGGTTGGCTTTTGTCACAAGGTTTTCTCCCCTCAGCTTTATAATTTGTGGTTGGCAGCTGGCTTGCTTACTTTCATGGAAATTTGGAAGGCGCGAAATAGACTCAGGTTTGATGATCGATCTCCTATCTTTTCTACACTGTGTTGTTCAATTATGGCATGGCTTCGGCAATTTGGTTCCCTTGTTCCTGGTCACTTTAAGGGCGTCCTTGATTCCCGCCTATTATCCTCCCTTGGGGTGTGCCCCAAGCCCCGTAATGCGCCCAAGATTCAACGTGTCATATGGCATCCCCCCCTCTTTCCTTGGGTCAAAGTTAACACTGATGGTCTGGCGAAAGGTAATCCTGGTCCTGCAGCTTGTGGGGGAGTCTTTCGTGATGCCTCTGGGGTTTATTTAGGGAGTTTTTGTCAACCTCTTGGTCGCAATTCATCCTTCTATGCTGAACTTTGTGCGGTTATTGTGTCTATTGAAGTTGCTTTCACCAGAGGTTGGACTACTCTGTGGTTGGAAAGCGATTCTACTAGTGTTTTAGCATCTCTTTCCTCCATTTCTTTCTCTCCTCCATGGGACTTGAGAGTTAGATGGCAAAACTGCCTGAAGAACATTCAACAAATGCAATTTCGGAGCACTCATATTTTTAGGGAAGGGAATGCAGCTGCTGATAAGATGGCAAACTTAGGTGTTTCAAAGCACTCATTTACTTGGTATCCTAGCCCTCCTGCAGAGCTTCACAGGTACTTGCAGGCTGATTTTTTGGGACTCCCAAATTATCGCTTCACAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1381

Amino Acids

155.95

Weight (kDa)

9.32

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	4 - 225	2.3e-09	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	506 - 762	1.1e-30	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1017 - 1099	2.5e-23	zinc-binding in reverse transcriptase
RVT_3	PF13456	1225 - 1345	4.4e-16	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	3063, 3399
AatII	GACGTC	1 cut(s)	3079
Acc36I	ACCTGC	2 cut(s)	256, 2243
AccB7I	CCANNNNNTGG	1 cut(s)	3846
AccBSI	CCGCTC	1 cut(s)	1159
AccI	GTMKAC	3 cut(s)	1663, 2260, 3026
AccII	CGCG	5 cut(s)	918, 950, 2491, 3133, 3451
AccIII	TCCGGA	1 cut(s)	2507
AclI	AACGTT	1 cut(s)	903
AclWI	GGATC	7 cut(s)	171, 1086, 1465, 1478, 1931, 2831, 2844
AcoI	YGGCCR	2 cut(s)	571, 2735
AcsI	RAATTY	5 cut(s)	157, 760, 2850, 2970, 3438
AcuI	CTGAAG	6 cut(s)	513, 987, 1161, 2139, 2816, 3974
AcyI	GRCGYC	2 cut(s)	3076, 3561
AfaI	GTAC	7 cut(s)	1087, 1426, 2185, 2224, 2392, 2963, 4094
AfiI	CCNNNNNNNGG	6 cut(s)	400, 1153, 1276, 1969, 3591, 3846
AflIII	ACRYGT	1 cut(s)	3631
AhlI	ACTAGT	2 cut(s)	1835, 3878
AjnI	CCWGG	6 cut(s)	1369, 1657, 2595, 2737, 3544, 3700
AjuI	GAANNNNNNNTTGG	2 cut(s)	1556, 1588
AloI	GAACNNNNNNTCC	2 cut(s)	3313, 3345
Alw21I	GWGCWC	6 cut(s)	566, 1054, 1369, 1918, 2563, 3986
Alw26I	GTCTC	6 cut(s)	605, 2061, 2211, 2513, 2990, 3087
AlwI	GGATC	7 cut(s)	171, 1086, 1465, 1478, 1931, 2831, 2844
AlwNI	CAGNNNCTG	4 cut(s)	859, 1376, 3035, 4016
Ama87I	CYCGRG	1 cut(s)	1053
Aor13HI	TCCGGA	1 cut(s)	2507
AoxI	GGCC	6 cut(s)	451, 571, 629, 1373, 2453, 2735
ApoI	RAATTY	5 cut(s)	157, 760, 2850, 2970, 3438
ArsI	GACNNNNNNTTYG	2 cut(s)	912, 944
AseI	ATTAAT	1 cut(s)	2169
Asp700I	GAANNNNTTC	2 cut(s)	2642, 2971
AspLEI	GCGC	4 cut(s)	2491, 3135, 3451, 3619
AspS9I	GGNCC	6 cut(s)	452, 716, 1373, 1714, 2505, 3704
AsuC2I	CCSGG	1 cut(s)	1985
AsuHPI	GGTGA	8 cut(s)	115, 422, 922, 1291, 1985, 2678, 2758, 3829
AvaI	CYCGRG	1 cut(s)	1053
AvaII	GGWCC	4 cut(s)	716, 1714, 2505, 3704
BaeGI	GKGCMC	1 cut(s)	3602
BaeI	ACNNNNGTAYC	2 cut(s)	1416, 1449
BalI	TGGCCA	2 cut(s)	573, 2737
BamHI	GGATCC	2 cut(s)	1470, 2836
BanII	GRGCYC	3 cut(s)	300, 436, 1054
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	437, 1917
BbsI	GAAGAC	4 cut(s)	141, 993, 1131, 1982
Bbv12I	GWGCWC	6 cut(s)	566, 1054, 1369, 1918, 2563, 3986
BbvCI	CCTCAGC	2 cut(s)	1638, 3390
BceAI	ACGGC	2 cut(s)	57, 2079
BciT130I	CCWGG	6 cut(s)	1371, 1659, 2597, 2739, 3546, 3702
BciVI	GTATCC	2 cut(s)	517, 4074
BclI	TGATCA	2 cut(s)	670, 967
BcnI	CCSGG	1 cut(s)	1985
BcoDI	GTCTC	6 cut(s)	605, 2061, 2211, 2513, 2990, 3087
BcuI	ACTAGT	2 cut(s)	1835, 3878
BfmI	CTRYAG	3 cut(s)	3027, 3708, 4077
BfuAI	ACCTGC	2 cut(s)	256, 2243
BfuI	GTATCC	2 cut(s)	517, 4074
BglII	AGATCT	1 cut(s)	88
BlpI	GCTNAGC	1 cut(s)	105
BmcAI	AGTACT	1 cut(s)	2185
Bme1390I	CCNGG	7 cut(s)	1371, 1659, 1985, 2597, 2739, 3546, 3702
Bme18I	GGWCC	4 cut(s)	716, 1714, 2505, 3704
BmeT110I	CYCGRG	1 cut(s)	1053
BmgT120I	GGNCC	6 cut(s)	452, 716, 1373, 1714, 2505, 3704
BmiI	GGNNCC	6 cut(s)	282, 433, 1472, 2838, 3322, 3535
BmrFI	CCNGG	7 cut(s)	1371, 1659, 1985, 2597, 2739, 3546, 3702
BmrI	ACTGGG	2 cut(s)	294, 3106
BmsI	GCATC	4 cut(s)	763, 3652, 3724, 3899
BmuI	ACTGGG	2 cut(s)	294, 3106
BoxI	GACNNNNGTC	1 cut(s)	597
BpiI	GAAGAC	4 cut(s)	141, 993, 1131, 1982
BpmI	CTGGAG	3 cut(s)	808, 1353, 3057
Bpu10I	CCTNAGC	4 cut(s)	720, 1558, 1638, 3390
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	3 cut(s)	1881, 2535, 3949
BpuMI	CCSGG	1 cut(s)	1985
Bsa29I	ATCGAT	1 cut(s)	3475
BsaBI	GATNNNNATC	1 cut(s)	1077
BsaHI	GRCGYC	2 cut(s)	3076, 3561
BsaI	GGTCTC	1 cut(s)	2211
BsaWI	WCCGGW	2 cut(s)	2507, 3208
BsaXI	ACNNNNNCTCC	4 cut(s)	553, 583, 3748, 3778
Bsc4I	CCNNNNNNNGG	6 cut(s)	400, 1153, 1276, 1969, 3591, 3846
Bse1I	ACTGG	5 cut(s)	20, 300, 1472, 2873, 3101
Bse3DI	GCAATG	2 cut(s)	99, 1182
Bse8I	GATNNNNATC	1 cut(s)	1077
BseAI	TCCGGA	1 cut(s)	2507
BseBI	CCWGG	6 cut(s)	1371, 1659, 2597, 2739, 3546, 3702
BseCI	ATCGAT	1 cut(s)	3475
BseGI	GGATG	8 cut(s)	405, 754, 988, 1255, 1360, 3305, 3643, 3785
BseJI	GATNNNNATC	1 cut(s)	1077
BseLI	CCNNNNNNNGG	6 cut(s)	400, 1153, 1276, 1969, 3591, 3846
BseMI	GCAATG	2 cut(s)	99, 1182
BseNI	ACTGG	5 cut(s)	20, 300, 1472, 2873, 3101
BseRI	GAGGAG	4 cut(s)	1626, 1884, 1985, 3906
BseSI	GKGCMC	1 cut(s)	3602
BseYI	CCCAGC	1 cut(s)	2384
BsgI	GTGCAG	5 cut(s)	498, 1140, 1605, 2034, 2169
Bsh1236I	CGCG	5 cut(s)	918, 950, 2491, 3133, 3451
BshFI	GGCC	6 cut(s)	453, 573, 631, 1375, 2455, 2737
BshVI	ATCGAT	1 cut(s)	3475
BsiHKAI	GWGCWC	6 cut(s)	566, 1054, 1369, 1918, 2563, 3986
BsiHKCI	CYCGRG	1 cut(s)	1053
BsiSI	CCGG	3 cut(s)	1984, 2508, 3209
BslFI	GGGAC	4 cut(s)	1502, 2114, 3938, 4128
BslI	CCNNNNNNNGG	6 cut(s)	400, 1153, 1276, 1969, 3591, 3846
BsmAI	GTCTC	6 cut(s)	605, 2061, 2211, 2513, 2990, 3087
BsmBI	CGTCTC	1 cut(s)	2061
BsmFI	GGGAC	4 cut(s)	1502, 2114, 3938, 4128
BsmI	GAATGC	2 cut(s)	3115, 4012
BsnI	GGCC	6 cut(s)	453, 573, 631, 1375, 2455, 2737
Bso31I	GGTCTC	1 cut(s)	2211
BsoBI	CYCGRG	1 cut(s)	1053
Bsp1286I	GDGCHC	9 cut(s)	300, 436, 566, 1054, 1369, 1918, 2563, 3602, 3986
Bsp13I	TCCGGA	1 cut(s)	2507
Bsp1407I	TGTACA	1 cut(s)	2961
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	2 cut(s)	395, 3920
Bsp68I	TCGCGA	2 cut(s)	918, 950
BspANI	GGCC	6 cut(s)	453, 573, 631, 1375, 2455, 2737
BspDI	ATCGAT	1 cut(s)	3475
BspEI	TCCGGA	1 cut(s)	2507
BspFNI	CGCG	5 cut(s)	918, 950, 2491, 3133, 3451
BspLI	GGNNCC	6 cut(s)	282, 433, 1472, 2838, 3322, 3535
BspMAI	CTGCAG	2 cut(s)	3712, 4081
BspMI	ACCTGC	2 cut(s)	256, 2243
BspPI	GGATC	7 cut(s)	171, 1086, 1465, 1478, 1931, 2831, 2844
BspQI	GCTCTTC	4 cut(s)	201, 378, 657, 2763
BspTNI	GGTCTC	1 cut(s)	2211
BsrBI	CCGCTC	1 cut(s)	1159
BsrDI	GCAATG	2 cut(s)	99, 1182
BsrGI	TGTACA	1 cut(s)	2961
BsrI	ACTGG	5 cut(s)	20, 300, 1472, 2873, 3101
BssNI	GRCGYC	2 cut(s)	3076, 3561
BssSI	CACGAG	2 cut(s)	437, 1917
BssT1I	CCWWGG	5 cut(s)	395, 1110, 3589, 3659, 3920
Bst2BI	CACGAG	2 cut(s)	437, 1917
Bst2UI	CCWGG	6 cut(s)	1371, 1659, 2597, 2739, 3546, 3702
Bst4CI	ACNGT	9 cut(s)	855, 1198, 1679, 2055, 2141, 2227, 2539, 3239, 3498
Bst6I	CTCTTC	6 cut(s)	201, 212, 378, 657, 1577, 2763
BstACI	GRCGYC	2 cut(s)	3076, 3561
BstAUI	TGTACA	1 cut(s)	2961
BstC8I	GCNNGC	8 cut(s)	916, 1624, 2457, 3173, 3306, 3418, 3422, 4101
BstDSI	CCRYGG	5 cut(s)	395, 568, 955, 2095, 3920
BstENI	CCTNNNNNAGG	1 cut(s)	1967
BstF5I	GGATG	8 cut(s)	405, 754, 988, 1255, 1360, 3305, 3643, 3785
BstFNI	CGCG	5 cut(s)	918, 950, 2491, 3133, 3451
BstHHI	GCGC	4 cut(s)	2491, 3135, 3451, 3619
BstMAI	GTCTC	6 cut(s)	605, 2061, 2211, 2513, 2990, 3087
BstMWI	GCNNNNNNNGC	6 cut(s)	570, 1973, 2336, 2368, 3231, 3251
BstNI	CCWGG	6 cut(s)	1371, 1659, 2597, 2739, 3546, 3702
BstNSI	RCATGY	1 cut(s)	1443
BstPAI	GACNNNNGTC	1 cut(s)	597
BstSCI	CCNGG	7 cut(s)	1369, 1657, 1983, 2595, 2737, 3544, 3700
BstSFI	CTRYAG	3 cut(s)	3027, 3708, 4077
BstSLI	GKGCMC	1 cut(s)	3602
BstUI	CGCG	5 cut(s)	918, 950, 2491, 3133, 3451
BstV2I	GAAGAC	4 cut(s)	141, 993, 1131, 1982
BstX2I	RGATCY	5 cut(s)	88, 163, 1470, 1936, 2836
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	5 cut(s)	88, 163, 1470, 1936, 2836
Bsu15I	ATCGAT	1 cut(s)	3475
BsuI	GTATCC	2 cut(s)	517, 4074
BsuRI	GGCC	6 cut(s)	453, 573, 631, 1375, 2455, 2737
BsuTUI	ATCGAT	1 cut(s)	3475
BtgI	CCRYGG	5 cut(s)	395, 568, 955, 2095, 3920
BtsCI	GGATG	8 cut(s)	405, 754, 988, 1255, 1360, 3305, 3643, 3785
BtsI	GCAGTG	1 cut(s)	2046
BtuMI	TCGCGA	2 cut(s)	918, 950
BveI	ACCTGC	2 cut(s)	256, 2243
Cac8I	GCNNGC	8 cut(s)	916, 1624, 2457, 3173, 3306, 3418, 3422, 4101
CaiI	CAGNNNCTG	4 cut(s)	859, 1376, 3035, 4016
CfoI	GCGC	4 cut(s)	2491, 3135, 3451, 3619
Cfr13I	GGNCC	6 cut(s)	452, 716, 1373, 1714, 2505, 3704
ClaI	ATCGAT	1 cut(s)	3475
CseI	GACGC	1 cut(s)	3550
CsiI	ACCWGGT	1 cut(s)	1657
Csp6I	GTAC	7 cut(s)	1086, 1425, 2184, 2223, 2391, 2962, 4093
CspCI	CAANNNNNGTGG	2 cut(s)	601, 636
CviQI	GTAC	7 cut(s)	1086, 1425, 2184, 2223, 2391, 2962, 4093
EaeI	YGGCCR	2 cut(s)	571, 2735
Eam1104I	CTCTTC	6 cut(s)	201, 212, 378, 657, 1577, 2763
EarI	CTCTTC	6 cut(s)	201, 212, 378, 657, 1577, 2763
Ecl136II	GAGCTC	1 cut(s)	1052
Eco130I	CCWWGG	5 cut(s)	395, 1110, 3589, 3659, 3920
Eco24I	GRGCYC	3 cut(s)	300, 436, 1054
Eco31I	GGTCTC	1 cut(s)	2211
Eco32I	GATATC	1 cut(s)	946
Eco47I	GGWCC	4 cut(s)	716, 1714, 2505, 3704
Eco53kI	GAGCTC	1 cut(s)	1052
Eco57I	CTGAAG	6 cut(s)	513, 987, 1161, 2139, 2816, 3974
Eco88I	CYCGRG	1 cut(s)	1053
EcoICRI	GAGCTC	1 cut(s)	1052
EcoNI	CCTNNNNNAGG	1 cut(s)	1967
EcoO109I	RGGNCCY	1 cut(s)	1373
EcoRII	CCWGG	6 cut(s)	1369, 1657, 2595, 2737, 3544, 3700
EcoRV	GATATC	1 cut(s)	946
EcoT14I	CCWWGG	5 cut(s)	395, 1110, 3589, 3659, 3920
EcoT38I	GRGCYC	3 cut(s)	300, 436, 1054
ErhI	CCWWGG	5 cut(s)	395, 1110, 3589, 3659, 3920
Esp3I	CGTCTC	1 cut(s)	2061
FalI	AAGNNNNNCTT	2 cut(s)	1075, 1107
FaqI	GGGAC	4 cut(s)	1502, 2114, 3938, 4128
FauI	CCCGC	3 cut(s)	2312, 2570, 3581
FauNDI	CATATG	1 cut(s)	3638
FbaI	TGATCA	2 cut(s)	670, 967
FblI	GTMKAC	3 cut(s)	1663, 2260, 3026
FokI	GGATG	8 cut(s)	412, 741, 995, 1262, 1367, 3312, 3630, 3772
FriOI	GRGCYC	3 cut(s)	300, 436, 1054
GlaI	GCGC	4 cut(s)	2490, 3134, 3450, 3618
GsaI	CCCAGC	1 cut(s)	2388
GsuI	CTGGAG	3 cut(s)	808, 1353, 3057
HaeIII	GGCC	6 cut(s)	453, 573, 631, 1375, 2455, 2737
HapII	CCGG	3 cut(s)	1984, 2508, 3209
HgaI	GACGC	1 cut(s)	3550
HhaI	GCGC	4 cut(s)	2491, 3135, 3451, 3619
Hin1I	GRCGYC	2 cut(s)	3076, 3561
Hin6I	GCGC	4 cut(s)	2489, 3133, 3449, 3617
HinP1I	GCGC	4 cut(s)	2489, 3133, 3449, 3617
HincII	GTYRAC	3 cut(s)	305, 3673, 3767
HindII	GTYRAC	3 cut(s)	305, 3673, 3767
HindIII	AAGCTT	1 cut(s)	624
HpaI	GTTAAC	1 cut(s)	3673
HpaII	CCGG	3 cut(s)	1984, 2508, 3209
HphI	GGTGA	8 cut(s)	115, 422, 922, 1291, 1985, 2678, 2758, 3829
Hpy166II	GTNNAC	7 cut(s)	123, 305, 1664, 2261, 3027, 3673, 3767
Hpy8I	GTNNAC	7 cut(s)	123, 305, 1664, 2261, 3027, 3673, 3767
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	8 cut(s)	471, 1185, 1245, 1660, 3130, 3439, 3799, 3995
HpyCH4III	ACNGT	9 cut(s)	855, 1198, 1679, 2055, 2141, 2227, 2539, 3239, 3498
HpyCH4IV	ACGT	8 cut(s)	386, 903, 1245, 1666, 2119, 2233, 3076, 3631
HpyF10VI	GCNNNNNNNGC	6 cut(s)	570, 1973, 2336, 2368, 3231, 3251
HpySE526I	ACGT	8 cut(s)	386, 903, 1245, 1666, 2119, 2233, 3076, 3631
Hsp92I	GRCGYC	2 cut(s)	3076, 3561
HspAI	GCGC	4 cut(s)	2489, 3133, 3449, 3617
Kpn2I	TCCGGA	1 cut(s)	2507
Ksp22I	TGATCA	2 cut(s)	670, 967
KspAI	GTTAAC	1 cut(s)	3673
LguI	GCTCTTC	4 cut(s)	201, 378, 657, 2763
LmnI	GCTCC	7 cut(s)	431, 561, 1156, 1372, 1800, 2566, 3981
LweI	GCATC	4 cut(s)	763, 3652, 3724, 3899
MabI	ACCWGGT	1 cut(s)	1657
MaeII	ACGT	8 cut(s)	386, 903, 1245, 1666, 2119, 2233, 3076, 3631
MbiI	CCGCTC	1 cut(s)	1159
MfeI	CAATTG	3 cut(s)	1551, 2015, 2773
MflI	RGATCY	5 cut(s)	88, 163, 1470, 1936, 2836
MhlI	GDGCHC	9 cut(s)	300, 436, 566, 1054, 1369, 1918, 2563, 3602, 3986
MlsI	TGGCCA	2 cut(s)	573, 2737
MluNI	TGGCCA	2 cut(s)	573, 2737
MlyI	GAGTC	8 cut(s)	38, 2515, 2542, 3032, 3257, 3453, 3732, 4110
MmeI	TCCRAC	7 cut(s)	263, 276, 539, 2762, 3330, 3827, 3843
Mox20I	TGGCCA	2 cut(s)	573, 2737
MroI	TCCGGA	1 cut(s)	2507
MroXI	GAANNNNTTC	2 cut(s)	2642, 2971
MscI	TGGCCA	2 cut(s)	573, 2737
MslI	CAYNNNNRTG	2 cut(s)	366, 1104
Msp20I	TGGCCA	2 cut(s)	573, 2737
MspA1I	CMGCKG	3 cut(s)	2310, 3416, 4013
MspI	CCGG	3 cut(s)	1984, 2508, 3209
MspR9I	CCNGG	7 cut(s)	1371, 1659, 1985, 2597, 2739, 3546, 3702
MunI	CAATTG	3 cut(s)	1551, 2015, 2773
Mva1269I	GAATGC	2 cut(s)	3115, 4012
MvaI	CCWGG	6 cut(s)	1371, 1659, 2597, 2739, 3546, 3702
MvnI	CGCG	5 cut(s)	918, 950, 2491, 3133, 3451
MwoI	GCNNNNNNNGC	6 cut(s)	570, 1973, 2336, 2368, 3231, 3251
NciI	CCSGG	1 cut(s)	1985
NcoI	CCATGG	2 cut(s)	395, 3920
NdeI	CATATG	1 cut(s)	3638
NlaIV	GGNNCC	6 cut(s)	282, 433, 1472, 2838, 3322, 3535
NmuCI	GTSAC	8 cut(s)	410, 928, 1279, 2533, 2591, 3077, 3371, 3548
NruI	TCGCGA	2 cut(s)	918, 950
NspI	RCATGY	1 cut(s)	1443
PaeR7I	CTCGAG	1 cut(s)	1053
PciSI	GCTCTTC	4 cut(s)	201, 378, 657, 2763
PctI	GAATGC	2 cut(s)	3115, 4012
PdmI	GAANNNNTTC	2 cut(s)	2642, 2971
PfeI	GAWTC	9 cut(s)	1213, 1743, 2656, 2877, 3157, 3205, 3569, 3625, 3872
PflMI	CCANNNNNTGG	1 cut(s)	3846
PleI	GAGTC	8 cut(s)	38, 2515, 2542, 3031, 3256, 3453, 3731, 4110
PpsI	GAGTC	8 cut(s)	38, 2515, 2542, 3031, 3256, 3453, 3731, 4110
PshAI	GACNNNNGTC	1 cut(s)	597
PshBI	ATTAAT	1 cut(s)	2169
PsiI	TTATAA	2 cut(s)	3063, 3399
Psp124BI	GAGCTC	1 cut(s)	1054
Psp1406I	AACGTT	1 cut(s)	903
Psp6I	CCWGG	6 cut(s)	1369, 1657, 2595, 2737, 3544, 3700
PspFI	CCCAGC	1 cut(s)	2384
PspGI	CCWGG	6 cut(s)	1369, 1657, 2595, 2737, 3544, 3700
PspN4I	GGNNCC	6 cut(s)	282, 433, 1472, 2838, 3322, 3535
PspPI	GGNCC	6 cut(s)	452, 716, 1373, 1714, 2505, 3704
PspXI	VCTCGAGB	1 cut(s)	1053
PstI	CTGCAG	2 cut(s)	3712, 4081
PstNI	CAGNNNCTG	4 cut(s)	859, 1376, 3035, 4016
PsuI	RGATCY	5 cut(s)	88, 163, 1470, 1936, 2836
PvuII	CAGCTG	3 cut(s)	2310, 3416, 4013
RruI	TCGCGA	2 cut(s)	918, 950
RsaI	GTAC	7 cut(s)	1087, 1426, 2185, 2224, 2392, 2963, 4094
RsaNI	GTAC	7 cut(s)	1086, 1425, 2184, 2223, 2391, 2962, 4093
RseI	CAYNNNNRTG	2 cut(s)	366, 1104
SacI	GAGCTC	1 cut(s)	1054
SapI	GCTCTTC	4 cut(s)	201, 378, 657, 2763
Sau96I	GGNCC	6 cut(s)	452, 716, 1373, 1714, 2505, 3704
ScaI	AGTACT	1 cut(s)	2185
SchI	GAGTC	8 cut(s)	38, 2515, 2542, 3032, 3257, 3453, 3732, 4110
ScrFI	CCNGG	7 cut(s)	1371, 1659, 1985, 2597, 2739, 3546, 3702
SduI	GDGCHC	9 cut(s)	300, 436, 566, 1054, 1369, 1918, 2563, 3602, 3986
SexAI	ACCWGGT	1 cut(s)	1657
SfaNI	GCATC	4 cut(s)	763, 3652, 3724, 3899
SfcI	CTRYAG	3 cut(s)	3027, 3708, 4077
Sfr274I	CTCGAG	1 cut(s)	1053
SinI	GGWCC	4 cut(s)	716, 1714, 2505, 3704
SlaI	CTCGAG	1 cut(s)	1053
SmiMI	CAYNNNNRTG	2 cut(s)	366, 1104
SmlI	CTYRAG	4 cut(s)	1053, 1896, 2550, 3928
SmoI	CTYRAG	4 cut(s)	1053, 1896, 2550, 3928
SpeI	ACTAGT	2 cut(s)	1835, 3878
SspI	AATATT	3 cut(s)	22, 67, 2515
SstI	GAGCTC	1 cut(s)	1054
StyD4I	CCNGG	7 cut(s)	1369, 1657, 1983, 2595, 2737, 3544, 3700
StyI	CCWWGG	5 cut(s)	395, 1110, 3589, 3659, 3920
TaaI	ACNGT	9 cut(s)	855, 1198, 1679, 2055, 2141, 2227, 2539, 3239, 3498
TaiI	ACGT	8 cut(s)	389, 906, 1248, 1669, 2122, 2236, 3079, 3634
TaqI	TCGA	4 cut(s)	1054, 1081, 2865, 3475
TaqII	GACCGA	1 cut(s)	1731
TatI	WGTACW	3 cut(s)	1085, 2183, 2961
TauI	GCSGC	2 cut(s)	194, 2618
TfiI	GAWTC	9 cut(s)	1213, 1743, 2656, 2877, 3157, 3205, 3569, 3625, 3872
TseFI	GTSAC	8 cut(s)	410, 928, 1279, 2533, 2591, 3077, 3371, 3548
Tsp45I	GTSAC	8 cut(s)	410, 928, 1279, 2533, 2591, 3077, 3371, 3548
TspGWI	ACGGA	2 cut(s)	1136, 2735
Van91I	CCANNNNNTGG	1 cut(s)	3846
VpaK11BI	GGWCC	4 cut(s)	716, 1714, 2505, 3704
VspI	ATTAAT	1 cut(s)	2169
XagI	CCTNNNNNAGG	1 cut(s)	1967
XapI	RAATTY	5 cut(s)	157, 760, 2850, 2970, 3438
XceI	RCATGY	1 cut(s)	1443
XhoI	CTCGAG	1 cut(s)	1053
XmiI	GTMKAC	3 cut(s)	1663, 2260, 3026
XmnI	GAANNNNTTC	2 cut(s)	2642, 2971
ZraI	GACGTC	1 cut(s)	3077
ZrmI	AGTACT	1 cut(s)	2185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.