Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Forward (+)

64419155 .. 64426617

Gene Structure 7463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG443000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4395 bp

ATGGCTCCGTCGCGTAGACGCGGAGCGAGCAAGGCTAAGAGCAAGGCGCAGTTGAGTCTCGGCGATCTTGTCCTCGCCAAGGTCAAGGGTCACCCCTTTTGGCCCGCCAAGATCAGCAAGCCTGAAGATTGGGAGAAAGTCCCTGATCCTAAGAAGTATTTTGTCCAATTTTTTGGAACAGAAGAGATAGCTTTTGTTGCACCTGTAGATATTCAGGCATTCACTAGTGAGGCAAAAAGTAAAATATCAGCTCGCTGTCAAGGCAAAACAAAGTATTTTTCCCAAGCTGTTAAGGAAATATGTGAAGCATTTGATGAGTTACAGAAAAAGAAATCAAATGATGTGAGGGTTGATACTGATAGATCAGATCTTGGATGTGATGCTCCATCTGTTGACGGGGTAGAGGATGATGTGGTTAATGTCGAGATAAAAGATGATAAGGGTGCAGTCGGTTCTGATGGAGATACAGTTAAGGAAGAAGGCACAGATGATTTTGGCTCTAAGTTGGAGCGTTGTTCACAGATACGAGGTGAAAATGATACTGAAGATGTAGACCCATCTACCTCTTGTGGAGCAAAGGAGAGTTCATCTCCCGTCTTTTCTTCTGAGGAAAATAAGAAAATGTCCTCAGTTGTTCACCCTAAGGTACCAAAGACATCCAATTCTTCTCATTTGAAGAAAGAAGTTTCTGATTATAAGTATGAAGATGATGATATTCGCACCAAGAAACATGGTGAGGGACAGAGGTCATTAGTAAATGGTCACAAGATGACAAAGATGGGTAGTGGATCAAAGAGGAGAAGTGATGGCATGGTTGAAGTACACAAGGGCAGCTCTTTAACGTCATTGAAGGAAGATGGCTCTGTTGGTTGTGTTGATCGCCCACAATCTGGTGATCAATTGAGAGATGGAACAACAGGCAAAACTATCTCTGGTGGCAATAAAAGGAAACTATCCCCAGATTCGCTTAAACCTGAAACTGGAATCAGGGATGGGAAAAGGACGAAAGACCTGCTTAAAGCCAAAAAGCATGTCAAAGTCCTAGATGAGGCAAAGGACTCTGTGGATGATCTTGAAGCCCAGGCCAGAGATAGACTCTCTGGAAGAACAAAGAATGCTCAAGTTGGGCGTGGAAAGCCTGATTTGGGAGCAAATGATATTTCACATCTGTCCAAAAAGTCAAAGCATGTTGATGCAGGGGAAAATACCCGGCGGGGTTCATTCTCAAAAAGTCCTCCGAGTTCTGATGTTGCTGATCGGAAGACGGTAAAAAAATTAGATTCAAAAATGTCTACTTCACGTGTTAAACCAGAGAACATTCTCGTATCCAAATCCCAAAATGTCAACGCTTCTGGTGATGAAGCTGTTCTACCCCTAGCAAAGCGTCGTCGTCGAGCGATGGAGGCTATGTCTGATTCTGACACTTTGGTTTCTGATGAGAAAATGGAAAAGGCTCCTGTTCAGAAGAATAATATAGCACGGTCTAGTGATGTCAAAGTTTCAGCACCTCAGACACAGAGAAAACGTAGGGCTGTATGCCTTTATGACGATGAGGAGGAGGAAGAAAAACCCAAAACACCCGTTCATGGAGGCTCTTCCCGAAATGTTAAAGCACCTTCAAATTCAGATGCTATAAAGAGCACTGGTGAAAATATTGAGAGTTCTGATACTGCTCTACACAGTGCAAAACATGCTACTGAAGTTCATGGCAGCCATACAAAGGAATCATCTTCCCAGCTGAAGAATGGGTCTCTGTCACCTAGCAAACCTGCAGTAGATGAGAAGAGGTCTCAAAAGCAAACTCAAACTGATGAAAAGAGGCTTGAAAAGGCAGTGCACATCTACCGGAGTCCAGCAAAATTAGAACCTGACCAGCAGGTGTCCAAAGAGTCAAAACCAACCTTGACTTCTCCTAAGAAGTCTCCTATGTTGGCTACAGCTACTAAACCTGCAGTTGAACAACAAAAAGCCACAAAAGCTCCAGTTAAAGGCTCTAATACTGCAACTCAGAAAAAGGGTCAGGCTGCATCTGGCAACAGTTCTAGAACAGTTTCTAATAGTGTGGTTTCTTCTCAAAAACCTAAACCTACTGCAAGACCAATATCCCGGATCAATGACTCCGCTATTTTACAGGAAAATACCATAGAGGACAATTTGTTACCCGCGGAAAGAATGGAAGTTGGAAAAGAAGATAAAAGTGCCTTATTGGTCGATTCTAAGACTCTGGAATCTTCTTCGTCTATGAAGCATCTAATTGCAGTTGCACAAGCAAAAAGGAAACAAACGCAGTCGCACAACTACTTCTTTGAAATTTCCAGTTCTGCTTTTTTATCTAGCACAGATGGGACGTGCCCCAGTCCTTTGGCAGTTCAGGGTCTTTATCCCATTAGCAACAGTGCATTGCAGGCAGATATTCCAGGACCTATTCAACCCACCACAAACATAGCTTCTCCATCTACTCATAGTCGCCCTTCTGCATTACAAAATCAACTAGACATCGAGGACATTTCAGAAAGAAGAGTTAGTTCTGGGCATCAGACAGCTGGAGGATCACTAAGTGGTGGTACCGAGGCAGCTGTTGCTCGTGATGCTTTTGAAGGAATGATAGAAACTTTGTCAAGGACCAAGGAAAGTATTAGTCGGGCAACTCGCTGTGCCCTTGATTGTGCCAAGTATGGTATAGCTAACGAGGTTGTGGAACTGCTTATCCGAAAGCTGGAGAGTGAGCCTAGTTTTCATCGTAAGGTCGACCTGTTCTTTCTTGTGGACTCCATCACACAAATCTCACATACTCAAAAAGGTATTGCTGGAGCTTCATATGTTCCAACTGTTCAAGCAGCATTGCCACGGCTTCTAGGTGCTGCTGCTCCACCTGGTTCTGGTGCTCGTGAGAATCGTCGTCAGTGTCATAAGGTTTTACGGCTCTGGCTTGAGAGGAAAATTTTTCCACAAGCAGTTCTTCGTCGGTACATGGATGACATTGGAGTTTCAAATGATGATACAACTGCTGGTTTCTCTCTTAGACGTCCATCTCGATCAGAGCGTGCTATTGATGATCCAATCAGGGAAATGGAAGGAATGTTTGTGGATGAGTATGGCAGCAATGCTACATTTCAGTTGCCCGGATTTCTATCTTCTCATGCATTTGAAGATGATGATGATGATGATGAAGAAGAAGTTCCAAGCTGTTCATACAAGGAGGCTAGTCATCCATCACCGGTAGAAACTACCCATGCCTCTGGGGAGTCAGAAACCTATGCTGTTACTCCAAATGATAGGCGGCATTGCATCTTAGAGGATGTGGACGGTGAGCTTGAAATGGAAGACGTTTCTGGACACCCGAAGGATGAAAGACCGTCATCTGTTAATGGTTCTTTTGAAATAGATCCACCACAGCAAGGGCCACATAGGGTCATGGAACCAGTTTTAAATGCTTGCACTGACTTGCCCCCACTTCCAGAGGGTTCCCCACCTTTGCCTCTTGATTCTCCTCCTCCACCCCCTCCTTTGCCTCCCTCACCACCACCACCACCTCCCCCACTGTCTCCATCACCGCCACCACCACCTCCGCCTCCCCCCTCACAGCCTCCTCCTCCTCTACCACTATCAGGTCCTCCACATTTATTGATTCCTCAGTCATCTAGACCAACCCAGCCTTCATTAGTAGCCCAACAGATGCTGCCACCTCAATCATCAATCCATTCTTCACCACAGTTGGCATATCAACCTTCTGTACCTCATGAATACTGCAGCACTAGTGGCAACCAACTAGTCCAAATGACTGGAAATGCTCCTCATGGGGGTGCTATTGATTCTGCTGTGAAAACCGAAATGTTTCCGCAGCAGCAAGCTTGCTTTGTCCCAGCAGGAGTATGTGGCCCTCGAGAACCTTCTGGATTTAATTCTACGAGGCAAGTAGAGCATGGACACAGTGACATTTTCATAAACACACAAGTCTCTCAACCAAACCAACAGGTCCAACAATTTCAACAAGGTAATGCACCTTTTGCTCCTAGACCTTTACCTCCAGCCCCGCCACAAAATCCATCCAGTCACTTCTCCTATGCAAAGCCCCCAGTTCAACAACATCCCCAGCATCCGTACCGCCCCCCATACCCTTTGCCACCCGTTCCTGATAATCAGAGACGATTTGTTACCGATGAACAACGGGGTGTCTGGATAAATGGAGGGAGGCCTCCTCACCCAGGGCCACCATTTGGCCATGAAGGTTTTTTTCGGCCACCAGTTGAGAGGCCACCAGCAAATAATATGAATTTTCAACGTCCTGCTCCTAATAATGTACCCTCTGGAGCTCCAATATCAGGTCATAGTGCTGCTCAGATCTTGCCGTGTAGGCCTGATATTTCTGCTGTTAATTGTTGGAGACCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

1464

Amino Acids

158.83

Weight (kDa)

7.78

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	21 - 104	1.5e-18	PWWP domain
CTK3	PF12243	862 - 981	3.1e-07	CTD kinase subunit gamma CTK3
CID	PF04818	864 - 988	1.4e-15	CID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
AarI	CACCTGC	1 cut(s)	1867
AatII	GACGTC	1 cut(s)	3028
Acc36I	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
Acc65I	GGTACC	2 cut(s)	646, 2564
AccB1I	GGYRCC	2 cut(s)	646, 2564
AccB7I	CCANNNNNTGG	2 cut(s)	890, 4217
AccI	GTMKAC	4 cut(s)	16, 552, 1292, 2748
AccII	CGCG	3 cut(s)	13, 21, 2165
AclWI	GGATC	6 cut(s)	140, 796, 2117, 2557, 3050, 3380
AcoI	YGGCCR	2 cut(s)	4219, 4238
AcsI	RAATTY	4 cut(s)	1621, 2310, 2940, 4273
AcuI	CTGAAG	4 cut(s)	144, 564, 1719, 1760
AcvI	CACGTG	1 cut(s)	1301
AcyI	GRCGYC	1 cut(s)	3025
AdeI	CACNNNGTG	1 cut(s)	2558
AfaI	GTAC	7 cut(s)	648, 822, 2566, 2969, 3735, 4103, 4302
AflIII	ACRYGT	1 cut(s)	1300
AgeI	ACCGGT	1 cut(s)	3217
AhlI	ACTAGT	3 cut(s)	224, 3755, 3769
AjiI	CACGTC	1 cut(s)	2349
AjnI	CCWGG	4 cut(s)	1080, 2416, 2872, 4204
AjuI	GAANNNNNNNTTGG	4 cut(s)	1891, 1923, 3640, 3672
AloI	GAACNNNNNNTCC	2 cut(s)	2691, 2723
Alw21I	GWGCWC	4 cut(s)	1643, 1839, 2887, 4315
Alw26I	GTCTC	8 cut(s)	62, 1755, 1794, 1926, 3549, 3961, 4138, 4378
Alw44I	GTGCAC	1 cut(s)	1835
AlwI	GGATC	6 cut(s)	140, 796, 2117, 2557, 3050, 3380
AlwNI	CAGNNNCTG	1 cut(s)	3679
Ama87I	CYCGRG	1 cut(s)	3882
ApaLI	GTGCAC	1 cut(s)	1835
ApoI	RAATTY	4 cut(s)	1621, 2310, 2940, 4273
ArsI	GACNNNNNNTTYG	2 cut(s)	1017, 1049
AsiGI	ACCGGT	1 cut(s)	3217
Asp700I	GAANNNNTTC	4 cut(s)	1365, 2050, 3177, 3834
Asp718I	GGTACC	2 cut(s)	646, 2564
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	8 cut(s)	102, 2420, 2622, 3401, 3611, 3878, 3976, 4208
AsuC2I	CCSGG	3 cut(s)	1210, 2107, 3123
AvaI	CYCGRG	1 cut(s)	3882
AvaII	GGWCC	4 cut(s)	2420, 2622, 3611, 3976
AxyI	CCTNAGG	1 cut(s)	642
BaeGI	GKGCMC	3 cut(s)	1839, 2354, 2659
BalI	TGGCCA	1 cut(s)	4221
BanI	GGYRCC	2 cut(s)	646, 2564
BanII	GRGCYC	1 cut(s)	4315
BarI	GAAGNNNNNNTAC	2 cut(s)	1353, 1385
BauI	CACGAG	2 cut(s)	2583, 2886
BbrPI	CACGTG	1 cut(s)	1301
BbsI	GAAGAC	2 cut(s)	1268, 3330
Bbv12I	GWGCWC	4 cut(s)	1643, 1839, 2887, 4315
BceAI	ACGGC	3 cut(s)	2864, 2936, 4333
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	4 cut(s)	1082, 2418, 2874, 4206
BciVI	GTATCC	1 cut(s)	1336
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	3 cut(s)	1210, 2107, 3123
BcoDI	GTCTC	8 cut(s)	62, 1755, 1794, 1926, 3549, 3961, 4138, 4378
BcuI	ACTAGT	3 cut(s)	224, 3755, 3769
BfmI	CTRYAG	5 cut(s)	204, 1770, 1935, 1950, 3748
BfuAI	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
BfuI	GTATCC	1 cut(s)	1336
BglI	GCCNNNNNGGC	1 cut(s)	4354
BglII	AGATCT	2 cut(s)	367, 4341
Bme1390I	CCNGG	7 cut(s)	1082, 1210, 2107, 2418, 2874, 3123, 4206
Bme18I	GGWCC	4 cut(s)	2420, 2622, 3611, 3976
BmeT110I	CYCGRG	1 cut(s)	3882
BmgBI	CACGTC	1 cut(s)	2349
BmgT120I	GGNCC	8 cut(s)	102, 2420, 2622, 3401, 3611, 3878, 3976, 4208
BmiI	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
BmrFI	CCNGG	7 cut(s)	1082, 1210, 2107, 2418, 2874, 3123, 4206
BmrI	ACTGGG	2 cut(s)	2349, 4070
BmuI	ACTGGG	2 cut(s)	2349, 4070
BoxI	GACNNNNGTC	1 cut(s)	745
BpiI	GAAGAC	2 cut(s)	1268, 3330
BplI	GAGNNNNNCTC	6 cut(s)	574, 606, 1080, 1112, 4183, 4215
BpmI	CTGGAG	6 cut(s)	1965, 2565, 2738, 2829, 4011, 4329
BpuEI	CTTGAG	2 cut(s)	1104, 2951
BpuMI	CCSGG	3 cut(s)	1210, 2107, 3123
BsaAI	YACGTR	1 cut(s)	1301
BsaBI	GATNNNNATC	1 cut(s)	3130
BsaHI	GRCGYC	1 cut(s)	3025
BsaI	GGTCTC	3 cut(s)	1755, 1794, 4378
BsaJI	CCNNGG	8 cut(s)	78, 1080, 2163, 2568, 2625, 2846, 4204, 4205
BsaWI	WCCGGW	2 cut(s)	1845, 3217
BsaXI	ACNNNNNCTCC	6 cut(s)	453, 483, 1394, 1424, 1963, 1993
Bse118I	RCCGGY	1 cut(s)	3217
Bse21I	CCTNAGG	1 cut(s)	642
Bse3DI	GCAATG	4 cut(s)	2399, 2840, 3109, 3283
Bse8I	GATNNNNATC	1 cut(s)	3130
BseBI	CCWGG	4 cut(s)	1082, 2418, 2874, 4206
BseDI	CCNNGG	8 cut(s)	78, 1080, 2163, 2568, 2625, 2846, 4204, 4205
BseJI	GATNNNNATC	1 cut(s)	3130
BseMI	GCAATG	4 cut(s)	2399, 2840, 3109, 3283
BseMII	CTCAG	6 cut(s)	597, 642, 1523, 2021, 3647, 4352
BseSI	GKGCMC	3 cut(s)	1839, 2354, 2659
BseYI	CCCAGC	4 cut(s)	1734, 3651, 3862, 4092
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	3 cut(s)	13, 21, 2165
BshNI	GGYRCC	2 cut(s)	646, 2564
BshTI	ACCGGT	1 cut(s)	3217
BsiHKAI	GWGCWC	4 cut(s)	1643, 1839, 2887, 4315
BsiHKCI	CYCGRG	1 cut(s)	3882
BsiSI	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
BslFI	GGGAC	4 cut(s)	125, 753, 2359, 3845
BsmAI	GTCTC	8 cut(s)	62, 1755, 1794, 1926, 3549, 3961, 4138, 4378
BsmBI	CGTCTC	1 cut(s)	4138
BsmFI	GGGAC	4 cut(s)	125, 753, 2359, 3845
BsmI	GAATGC	2 cut(s)	218, 1120
Bso31I	GGTCTC	3 cut(s)	1755, 1794, 4378
BsoBI	CYCGRG	1 cut(s)	3882
Bsp1286I	GDGCHC	6 cut(s)	1643, 1839, 2354, 2659, 2887, 4315
BspCNI	CTCAG	6 cut(s)	598, 641, 1522, 2020, 3646, 4351
BspFNI	CGCG	3 cut(s)	13, 21, 2165
BspHI	TCATGA	1 cut(s)	3739
BspLI	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
BspMAI	CTGCAG	3 cut(s)	1774, 1954, 3752
BspMI	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
BspPI	GGATC	6 cut(s)	140, 796, 2117, 2557, 3050, 3380
BspQI	GCTCTTC	1 cut(s)	1600
BspT107I	GGYRCC	2 cut(s)	646, 2564
BspTNI	GGTCTC	3 cut(s)	1755, 1794, 4378
BsrDI	GCAATG	4 cut(s)	2399, 2840, 3109, 3283
BsrFI	RCCGGY	1 cut(s)	3217
BssAI	RCCGGY	1 cut(s)	3217
BssECI	CCNNGG	8 cut(s)	78, 1080, 2163, 2568, 2625, 2846, 4204, 4205
BssNI	GRCGYC	1 cut(s)	3025
BssSI	CACGAG	2 cut(s)	2583, 2886
BssT1I	CCWWGG	2 cut(s)	78, 2625
Bst2BI	CACGAG	2 cut(s)	2583, 2886
Bst2UI	CCWGG	4 cut(s)	1082, 2418, 2874, 4206
Bst6I	CTCTTC	4 cut(s)	177, 1600, 1778, 2512
BstACI	GRCGYC	1 cut(s)	3025
BstAPI	GCANNNNNTGC	3 cut(s)	1691, 2579, 4007
BstBAI	YACGTR	1 cut(s)	1301
BstC8I	GCNNGC	9 cut(s)	28, 105, 119, 253, 2406, 3045, 3436, 3849, 3853
BstDSI	CCRYGG	2 cut(s)	2163, 2846
BstEII	GGTNACC	1 cut(s)	89
BstENI	CCTNNNNNAGG	3 cut(s)	77, 1046, 4203
BstFNI	CGCG	3 cut(s)	13, 21, 2165
BstHHI	GCGC	1 cut(s)	49
BstMAI	GTCTC	8 cut(s)	62, 1755, 1794, 1926, 3549, 3961, 4138, 4378
BstNI	CCWGG	4 cut(s)	1082, 2418, 2874, 4206
BstNSI	RCATGY	3 cut(s)	1034, 1190, 1694
BstPAI	GACNNNNGTC	1 cut(s)	745
BstPI	GGTNACC	1 cut(s)	89
BstSCI	CCNGG	7 cut(s)	1080, 1208, 2105, 2416, 2872, 3121, 4204
BstSFI	CTRYAG	5 cut(s)	204, 1770, 1935, 1950, 3748
BstSLI	GKGCMC	3 cut(s)	1839, 2354, 2659
BstUI	CGCG	3 cut(s)	13, 21, 2165
BstV2I	GAAGAC	2 cut(s)	1268, 3330
BstX2I	RGATCY	3 cut(s)	367, 3385, 4341
BstXI	CCANNNNNNTGG	4 cut(s)	173, 2362, 3239, 3782
BstYI	RGATCY	3 cut(s)	367, 3385, 4341
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	1336
BtgI	CCRYGG	2 cut(s)	2163, 2846
BtgZI	GCGATG	1 cut(s)	1412
BtrI	CACGTC	1 cut(s)	2349
BtsI	GCAGTG	1 cut(s)	1839
BtsIMutI	CAGTG	8 cut(s)	1641, 1687, 1839, 2401, 2909, 3438, 3539, 3937
BveI	ACCTGC	4 cut(s)	1020, 1777, 1867, 1957
Cac8I	GCNNGC	9 cut(s)	28, 105, 119, 253, 2406, 3045, 3436, 3849, 3853
CaiI	CAGNNNCTG	1 cut(s)	3679
CciI	TCATGA	1 cut(s)	3739
CfoI	GCGC	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	3217
Cfr13I	GGNCC	8 cut(s)	102, 2420, 2622, 3401, 3611, 3878, 3976, 4208
Cfr42I	CCGCGG	1 cut(s)	2166
CseI	GACGC	2 cut(s)	27, 1373
CsiI	ACCWGGT	1 cut(s)	2872
Csp6I	GTAC	7 cut(s)	647, 821, 2565, 2968, 3734, 4102, 4301
CspAI	ACCGGT	1 cut(s)	3217
CspCI	CAANNNNNGTGG	2 cut(s)	3606, 3641
CviQI	GTAC	7 cut(s)	647, 821, 2565, 2968, 3734, 4102, 4301
DraI	TTTAAA	1 cut(s)	3429
DraIII	CACNNNGTG	1 cut(s)	2558
EaeI	YGGCCR	2 cut(s)	4219, 4238
Eam1104I	CTCTTC	4 cut(s)	177, 1600, 1778, 2512
EarI	CTCTTC	4 cut(s)	177, 1600, 1778, 2512
EciI	GGCGGA	1 cut(s)	3558
Ecl136II	GAGCTC	1 cut(s)	4313
Eco130I	CCWWGG	2 cut(s)	78, 2625
Eco147I	AGGCCT	2 cut(s)	4195, 4357
Eco24I	GRGCYC	1 cut(s)	4315
Eco31I	GGTCTC	3 cut(s)	1755, 1794, 4378
Eco47I	GGWCC	4 cut(s)	2420, 2622, 3611, 3976
Eco53kI	GAGCTC	1 cut(s)	4313
Eco57I	CTGAAG	4 cut(s)	144, 564, 1719, 1760
Eco72I	CACGTG	1 cut(s)	1301
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	3882
Eco91I	GGTNACC	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	4313
EcoNI	CCTNNNNNAGG	3 cut(s)	77, 1046, 4203
EcoO109I	RGGNCCY	2 cut(s)	2420, 3611
EcoO65I	GGTNACC	1 cut(s)	89
EcoRII	CCWGG	4 cut(s)	1080, 2416, 2872, 4204
EcoT14I	CCWWGG	2 cut(s)	78, 2625
EcoT22I	ATGCAT	1 cut(s)	3145
EcoT38I	GRGCYC	1 cut(s)	4315
ErhI	CCWWGG	2 cut(s)	78, 2625
Esp3I	CGTCTC	1 cut(s)	4138
FalI	AAGNNNNNCTT	4 cut(s)	999, 1031, 2943, 2975
FaqI	GGGAC	4 cut(s)	125, 753, 2359, 3845
FauI	CCCGC	4 cut(s)	112, 1206, 2170, 4041
FauNDI	CATATG	1 cut(s)	2818
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	4 cut(s)	16, 552, 1292, 2748
FriOI	GRGCYC	1 cut(s)	4315
GlaI	GCGC	1 cut(s)	48
GsaI	CCCAGC	4 cut(s)	1738, 3655, 3866, 4096
GsuI	CTGGAG	6 cut(s)	1965, 2565, 2738, 2829, 4011, 4329
HapII	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
HgaI	GACGC	2 cut(s)	27, 1373
HhaI	GCGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	3025
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HincII	GTYRAC	3 cut(s)	394, 1345, 2749
HindII	GTYRAC	3 cut(s)	394, 1345, 2749
HindIII	AAGCTT	1 cut(s)	3849
HpaII	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
Hpy99I	CGWCG	6 cut(s)	13, 1389, 1392, 1395, 2901, 2967
HpyCH4IV	ACGT	7 cut(s)	842, 1300, 1525, 2348, 3025, 3327, 4282
HpySE526I	ACGT	7 cut(s)	842, 1300, 1525, 2348, 3025, 3327, 4282
Hsp92I	GRCGYC	1 cut(s)	3025
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	2 cut(s)	650, 2568
Ksp22I	TGATCA	1 cut(s)	895
KspI	CCGCGG	1 cut(s)	2166
LguI	GCTCTTC	1 cut(s)	1600
MabI	ACCWGGT	1 cut(s)	2872
MaeII	ACGT	7 cut(s)	842, 1300, 1525, 2348, 3025, 3327, 4282
MaeIII	GTNAC	9 cut(s)	89, 318, 761, 1755, 2157, 3262, 3932, 4052, 4153
MfeI	CAATTG	1 cut(s)	899
MflI	RGATCY	3 cut(s)	367, 3385, 4341
MhlI	GDGCHC	6 cut(s)	1643, 1839, 2354, 2659, 2887, 4315
MlsI	TGGCCA	1 cut(s)	4221
MluNI	TGGCCA	1 cut(s)	4221
MlyI	GAGTC	9 cut(s)	64, 1052, 1089, 1858, 1898, 2111, 2215, 2762, 3254
MmeI	TCCRAC	5 cut(s)	486, 2161, 2849, 4003, 4361
Mox20I	TGGCCA	1 cut(s)	4221
Mph1103I	ATGCAT	1 cut(s)	3145
MroXI	GAANNNNTTC	4 cut(s)	1365, 2050, 3177, 3834
MscI	TGGCCA	1 cut(s)	4221
MslI	CAYNNNNRTG	2 cut(s)	1191, 3801
Msp20I	TGGCCA	1 cut(s)	4221
MspA1I	CMGCKG	4 cut(s)	1738, 2165, 2543, 2576
MspI	CCGG	5 cut(s)	1210, 1846, 2107, 3123, 3218
MspR9I	CCNGG	7 cut(s)	1082, 1210, 2107, 2418, 2874, 3123, 4206
MunI	CAATTG	1 cut(s)	899
Mva1269I	GAATGC	2 cut(s)	218, 1120
MvaI	CCWGG	4 cut(s)	1082, 2418, 2874, 4206
MvnI	CGCG	3 cut(s)	13, 21, 2165
NciI	CCSGG	3 cut(s)	1210, 2107, 3123
NdeI	CATATG	1 cut(s)	2818
NlaIV	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	5 cut(s)	89, 761, 1755, 3932, 4052
NsiI	ATGCAT	1 cut(s)	3145
NspI	RCATGY	3 cut(s)	1034, 1190, 1694
PaeR7I	CTCGAG	1 cut(s)	3882
PagI	TCATGA	1 cut(s)	3739
PaqCI	CACCTGC	1 cut(s)	1867
PasI	CCCWGGG	1 cut(s)	4205
PceI	AGGCCT	2 cut(s)	4195, 4357
PciSI	GCTCTTC	1 cut(s)	1600
PcsI	WCGNNNNNNNCGW	3 cut(s)	2893, 3031, 3040
PctI	GAATGC	2 cut(s)	218, 1120
PdmI	GAANNNNTTC	4 cut(s)	1365, 2050, 3177, 3834
PflMI	CCANNNNNTGG	2 cut(s)	890, 4217
PfoI	TCCNGGA	2 cut(s)	2105, 2416
PinAI	ACCGGT	1 cut(s)	3217
PleI	GAGTC	9 cut(s)	63, 1052, 1089, 1857, 1897, 2111, 2215, 2762, 3253
PmaCI	CACGTG	1 cut(s)	1301
PmlI	CACGTG	1 cut(s)	1301
PpsI	GAGTC	9 cut(s)	63, 1052, 1089, 1857, 1897, 2111, 2215, 2762, 3253
Ppu21I	YACGTR	1 cut(s)	1301
PpuMI	RGGWCCY	2 cut(s)	2420, 3611
PshAI	GACNNNNGTC	1 cut(s)	745
PsiI	TTATAA	1 cut(s)	696
Psp124BI	GAGCTC	1 cut(s)	4315
Psp5II	RGGWCCY	2 cut(s)	2420, 3611
Psp6I	CCWGG	4 cut(s)	1080, 2416, 2872, 4204
PspCI	CACGTG	1 cut(s)	1301
PspEI	GGTNACC	1 cut(s)	89
PspFI	CCCAGC	4 cut(s)	1734, 3651, 3862, 4092
PspGI	CCWGG	4 cut(s)	1080, 2416, 2872, 4204
PspN4I	GGNNCC	6 cut(s)	6, 648, 1455, 2566, 3420, 3466
PspPI	GGNCC	8 cut(s)	102, 2420, 2622, 3401, 3611, 3878, 3976, 4208
PspPPI	RGGWCCY	2 cut(s)	2420, 3611
PstI	CTGCAG	3 cut(s)	1774, 1954, 3752
PstNI	CAGNNNCTG	1 cut(s)	3679
PsuI	RGATCY	3 cut(s)	367, 3385, 4341
PvuII	CAGCTG	3 cut(s)	1738, 2543, 2576
RsaI	GTAC	7 cut(s)	648, 822, 2566, 2969, 3735, 4103, 4302
RsaNI	GTAC	7 cut(s)	647, 821, 2565, 2968, 3734, 4102, 4301
RseI	CAYNNNNRTG	2 cut(s)	1191, 3801
SacI	GAGCTC	1 cut(s)	4315
SacII	CCGCGG	1 cut(s)	2166
SalI	GTCGAC	1 cut(s)	2747
SapI	GCTCTTC	1 cut(s)	1600
Sau96I	GGNCC	8 cut(s)	102, 2420, 2622, 3401, 3611, 3878, 3976, 4208
SchI	GAGTC	9 cut(s)	64, 1052, 1089, 1858, 1898, 2111, 2215, 2762, 3254
ScrFI	CCNGG	7 cut(s)	1082, 1210, 2107, 2418, 2874, 3123, 4206
SduI	GDGCHC	6 cut(s)	1643, 1839, 2354, 2659, 2887, 4315
SexAI	ACCWGGT	1 cut(s)	2872
SfcI	CTRYAG	5 cut(s)	204, 1770, 1935, 1950, 3748
Sfr274I	CTCGAG	1 cut(s)	3882
Sfr303I	CCGCGG	1 cut(s)	2166
SgrBI	CCGCGG	1 cut(s)	2166
SinI	GGWCC	4 cut(s)	2420, 2622, 3611, 3976
SlaI	CTCGAG	1 cut(s)	3882
SmiMI	CAYNNNNRTG	2 cut(s)	1191, 3801
SmlI	CTYRAG	3 cut(s)	1119, 2930, 3882
SmoI	CTYRAG	3 cut(s)	1119, 2930, 3882
SpeI	ACTAGT	3 cut(s)	224, 3755, 3769
SseBI	AGGCCT	2 cut(s)	4195, 4357
SspI	AATATT	1 cut(s)	1654
SstI	GAGCTC	1 cut(s)	4315
StuI	AGGCCT	2 cut(s)	4195, 4357
StyD4I	CCNGG	7 cut(s)	1080, 1208, 2105, 2416, 2872, 3121, 4204
StyI	CCWWGG	2 cut(s)	78, 2625
TaiI	ACGT	7 cut(s)	845, 1303, 1528, 2351, 3028, 3330, 4285
TaqI	TCGA	7 cut(s)	423, 1393, 2211, 2499, 2748, 3034, 3883
TatI	WGTACW	1 cut(s)	820
TauI	GCSGC	1 cut(s)	3283
TscAI	CASTG	8 cut(s)	1648, 1687, 1839, 2401, 2909, 3445, 3546, 3937
TseFI	GTSAC	5 cut(s)	89, 761, 1755, 3932, 4052
Tsp45I	GTSAC	5 cut(s)	89, 761, 1755, 3932, 4052
TspGWI	ACGGA	1 cut(s)	4089
TspRI	CASTG	8 cut(s)	1648, 1687, 1839, 2401, 2909, 3445, 3546, 3937
Van91I	CCANNNNNTGG	2 cut(s)	890, 4217
VneI	GTGCAC	1 cut(s)	1835
VpaK11BI	GGWCC	4 cut(s)	2420, 2622, 3611, 3976
XagI	CCTNNNNNAGG	3 cut(s)	77, 1046, 4203
XapI	RAATTY	4 cut(s)	1621, 2310, 2940, 4273
XbaI	TCTAGA	2 cut(s)	2042, 3641
XceI	RCATGY	3 cut(s)	1034, 1190, 1694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1742
XhoI	CTCGAG	1 cut(s)	3882
XmiI	GTMKAC	4 cut(s)	16, 552, 1292, 2748
XmnI	GAANNNNTTC	4 cut(s)	1365, 2050, 3177, 3834
ZraI	GACGTC	1 cut(s)	3026
Zsp2I	ATGCAT	1 cut(s)	3145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.