Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003031

Physical Location & Seq

Genomic Coordinates Reverse (-)

54465249 .. 54472043

Gene Structure 6795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0373700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAAGCTACATTTTCTTTCACTCTTGTTCTTCTTTTCGTTAATCCTAGCATCATCATCAGCTTTCTTTGTTGTCAACCTCACAAATTACCATCAGATCGAGCTCCCAAAAAGCGTAGTTGGTCCGGAAAGCATTGCGTTCGACTGCCGTGGAAAAGGACCTTATGTTGGAGTGTCAGATGGAAGAATTCTCAAATGGCAAGGGCCTTGCCGGGGCTGGACGGAGTTTGCCTTTACCTCCCCAACCAGGCCAAGGAAAATATGTGATGGTTCAACCGATAATACGACTGAACCAATATGTGGAAGGCCACTAGGCTTGAAGTTCAACCCAAAAACTTGTGAACTCTATATAGCAGATGCCTACTTCGGGCTGTTAAAGATAGGTCGCAATGGTGGTCGTCCTCAACAACTTGCCACTTCCCTAAATGGAGTCCCTTTCCGTTTTCTGAATGCTCTGGACATTGATTGTCAAAGTGGAATTGTTTATTTTACAGACACCAGCACAGTTTACCAAAGAAGGTTGTGGCCTTTGTCAATTGCCACCGGTGACAAAACCGGAAGGTTATTGCAATACGACCCTTGTACAAAGAAGGTGACTGTGTTGCTCGATAACTTGGCTTTTGCAAATGGTGTGGCTCTAAGCAAGGACAGTTCTTTCCTCCTAGTAGCCGAATCCGCCACATTCAAAATCTTCAAGCTTTGGCTTCGAGGACCCAAAGCTCACGACGTAGAACTCTTCTCTCAACTGAAAAGGCCAGCCGATAACATTAAGAGGACCAACAGTGGTGAATTTTGGGCTGCACTCAATAGTCTAAGAGGATTACAGGGTAACCAGACTTCTCCATCCTTGTGGTTGACGAAAGATCCGGTGGGAGTGAAGTTTGATGAACAAGGAAACGTAATGGAGGTGTTAGATGGAGAGGGTGGTCCGACGCTTGAGTCCATTAGTGAGGTTGAAGAACACAACGGAAAGTTGTGGATTGGATCGGTAGTGAAGTCCTATGTTGGAGTTATCAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009605 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0043476 GO:0043478 GO:0043479 GO:0043480 GO:0043481 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0046483 GO:0048367 GO:0048437 GO:0048497 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1901360 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CTD_bind PWWP

Protein Analysis

340

Amino Acids

37.56

Weight (kDa)

8.86

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Str_synth	PF03088	150 - 237	5e-28	Strictosidine synthase
SGL	PF08450	181 - 270	1.3e-07	SMP-30/Gluconolactonase/LRE-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08230 AT5G23150 AT5G23150 AT5G23150
fragaria_vesca	FvH4_4g36930 FvH4_4g36930 FvH4_4g36930
malus_domestica	MD13G1005600.v1.1 MD16G1002500.v1.1
prunus_persica	Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1 Prupe.1G347400_v2.0.a1
pyrus_communis	pycom13g00460 pycom16g00340
rosa_chinensis	RchiOBHm_Chr4g0446691
rosa_laevigata	RLG00000005639
rosa_multiflora	Rmu_co8305917.1_g000001 Rmu_sc0001753.1_g000040
rosa_roxburghii	Rroxscaffold_5G00387050
rosa_rugosa	Rorug04G0373700 Rorug04G0373800
rosa_samantha	Rh4AG435200 Rh4BG444200 Rh4CG461500 Rh4DG443000
rosa_wichuraiana	Rw4G037210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	937
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	1 cut(s)	675
AclWI	GGATC	2 cut(s)	857, 991
AcsI	RAATTY	2 cut(s)	186, 788
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	6 cut(s)	167, 212, 246, 252, 299, 366
AgeI	ACCGGT	1 cut(s)	542
AgsI	TTSAA	6 cut(s)	273, 319, 325, 685, 694, 956
AjnI	CCWGG	1 cut(s)	245
AluBI	AGCT	5 cut(s)	7, 62, 103, 697, 719
AluI	AGCT	5 cut(s)	7, 62, 103, 697, 719
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	857, 991
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	5 cut(s)	203, 248, 305, 524, 752
ApeKI	GCWGC	1 cut(s)	797
ApoI	RAATTY	2 cut(s)	186, 788
AsiGI	ACCGGT	1 cut(s)	542
AspS9I	GGNCC	6 cut(s)	122, 158, 203, 710, 774, 926
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	557, 604, 797
AvaII	GGWCC	5 cut(s)	122, 158, 710, 774, 926
BanII	GRGCYC	1 cut(s)	105
BarI	GAAGNNNNNNTAC	2 cut(s)	820, 852
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	5 cut(s)	99, 173, 260, 850, 908
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	121, 155
BciT130I	CCWGG	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	3 cut(s)	47, 311, 662
BisI	GCNGC	1 cut(s)	798
BlsI	GCNGC	1 cut(s)	799
Bme1390I	CCNGG	2 cut(s)	212, 247
Bme18I	GGWCC	5 cut(s)	122, 158, 710, 774, 926
BmgT120I	GGNCC	6 cut(s)	122, 158, 203, 710, 774, 926
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	2 cut(s)	212, 247
BmsI	GCATC	2 cut(s)	59, 346
BpuEI	CTTGAG	1 cut(s)	956
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	148, 211, 251
BsaWI	WCCGGW	4 cut(s)	124, 542, 554, 865
Bsc4I	CCNNNNNNNGG	6 cut(s)	167, 212, 246, 252, 299, 366
Bse118I	RCCGGY	1 cut(s)	542
Bse3DI	GCAATG	2 cut(s)	132, 394
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	3 cut(s)	148, 211, 251
BseGI	GGATG	1 cut(s)	842
BseLI	CCNNNNNNNGG	6 cut(s)	167, 212, 246, 252, 299, 366
BseMI	GCAATG	2 cut(s)	132, 394
BseXI	GCAGC	1 cut(s)	784
BsgI	GTGCAG	1 cut(s)	783
BshFI	GGCC	5 cut(s)	205, 250, 307, 526, 754
BshTI	ACCGGT	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	5 cut(s)	125, 211, 543, 555, 866
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	6 cut(s)	167, 212, 246, 252, 299, 366
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	5 cut(s)	205, 250, 307, 526, 754
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	96, 862, 983
BspACI	CCGC	1 cut(s)	675
BspANI	GGCC	5 cut(s)	205, 250, 307, 526, 754
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	712
BspPI	GGATC	2 cut(s)	857, 991
BsrDI	GCAATG	2 cut(s)	132, 394
BsrFI	RCCGGY	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	3 cut(s)	148, 211, 251
BssMI	GATC	3 cut(s)	96, 862, 983
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	4 cut(s)	505, 598, 650, 782
Bst6I	CTCTTC	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	756
BstDEI	CTNAG	2 cut(s)	638, 812
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	827
BstF5I	GGATG	1 cut(s)	842
BstKTI	GATC	3 cut(s)	99, 865, 986
BstMBI	GATC	3 cut(s)	96, 862, 983
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	1 cut(s)	247
BstPI	GGTNACC	1 cut(s)	827
BstSCI	CCNGG	2 cut(s)	210, 245
BstV1I	GCAGC	1 cut(s)	784
BstX2I	RGATCY	1 cut(s)	862
BstXI	CCANNNNNNTGG	1 cut(s)	849
BstYI	RGATCY	1 cut(s)	862
BsuRI	GGCC	5 cut(s)	205, 250, 307, 526, 754
BtgI	CCRYGG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	842
BtsIMutI	CAGTG	1 cut(s)	787
Cac8I	GCNNGC	1 cut(s)	756
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	6 cut(s)	122, 158, 203, 710, 774, 926
CseI	GACGC	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	582
CspAI	ACCGGT	1 cut(s)	542
CspCI	CAANNNNNGTGG	4 cut(s)	297, 332, 612, 647
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	2 cut(s)	638, 812
DpnI	GATC	3 cut(s)	98, 864, 985
DpnII	GATC	3 cut(s)	96, 862, 983
DrdI	GACNNNNNNGTC	1 cut(s)	937
DseDI	GACNNNNNNGTC	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	740
EarI	CTCTTC	1 cut(s)	740
EciI	GGCGGA	1 cut(s)	664
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	5 cut(s)	122, 158, 710, 774, 926
Eco53kI	GAGCTC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	827
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	3 cut(s)	158, 203, 710
EcoO65I	GGTNACC	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	251
FaiI	YATR	7 cut(s)	165, 262, 298, 348, 350, 1002, 1021
FaqI	GGGAC	1 cut(s)	416
Fnu4HI	GCNGC	1 cut(s)	798
FokI	GGATG	1 cut(s)	829
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	798
FspBI	CTAG	3 cut(s)	47, 311, 662
GluI	GCNGC	1 cut(s)	798
HaeIII	GGCC	5 cut(s)	205, 250, 307, 526, 754
HapII	CCGG	5 cut(s)	125, 211, 543, 555, 866
HgaI	GACGC	1 cut(s)	940
HincII	GTYRAC	2 cut(s)	76, 855
HindII	GTYRAC	2 cut(s)	76, 855
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	3 cut(s)	429, 671, 938
HpaII	CCGG	5 cut(s)	125, 211, 543, 555, 866
HphI	GGTGA	3 cut(s)	557, 604, 797
Hpy166II	GTNNAC	4 cut(s)	76, 341, 508, 855
Hpy188I	TCNGA	4 cut(s)	96, 178, 447, 930
Hpy188III	TCNNGA	3 cut(s)	125, 455, 722
Hpy8I	GTNNAC	4 cut(s)	76, 341, 508, 855
Hpy99I	CGWCG	2 cut(s)	728, 934
HpyAV	CCTTC	4 cut(s)	297, 510, 552, 583
HpyCH4III	ACNGT	4 cut(s)	505, 598, 650, 782
HpyCH4IV	ACGT	2 cut(s)	726, 897
HpyCH4V	TGCA	3 cut(s)	568, 623, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	2 cut(s)	638, 812
HpySE526I	ACGT	2 cut(s)	726, 897
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	96, 862, 983
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	2 cut(s)	59, 346
MaeI	CTAG	3 cut(s)	47, 311, 662
MaeII	ACGT	2 cut(s)	726, 897
MaeIII	GTNAC	3 cut(s)	545, 592, 827
MalI	GATC	3 cut(s)	98, 864, 985
MboI	GATC	3 cut(s)	96, 862, 983
MboII	GAAGA	5 cut(s)	22, 195, 682, 727, 968
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	862
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	85, 186, 477, 534, 788
MlyI	GAGTC	2 cut(s)	438, 947
MmeI	TCCRAC	3 cut(s)	148, 953, 985
MroI	TCCGGA	1 cut(s)	124
MseI	TTAA	3 cut(s)	41, 374, 768
MslI	CAYNNNNRTG	1 cut(s)	847
MspI	CCGG	5 cut(s)	125, 211, 543, 555, 866
MspR9I	CCNGG	2 cut(s)	212, 247
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	674
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	3 cut(s)	96, 862, 983
NlaIV	GGNNCC	1 cut(s)	712
NmuCI	GTSAC	2 cut(s)	545, 592
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	542
PkrI	GCNGC	1 cut(s)	799
PleI	GAGTC	2 cut(s)	437, 946
PpsI	GAGTC	2 cut(s)	437, 946
PpuMI	RGGWCCY	2 cut(s)	158, 710
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	2 cut(s)	158, 710
Psp6I	CCWGG	1 cut(s)	245
PspEI	GGTNACC	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	6 cut(s)	122, 158, 203, 710, 774, 926
PspPPI	RGGWCCY	2 cut(s)	158, 710
PsuI	RGATCY	1 cut(s)	862
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
RseI	CAYNNNNRTG	1 cut(s)	847
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	41, 374, 768
SatI	GCNGC	1 cut(s)	798
Sau3AI	GATC	3 cut(s)	96, 862, 983
Sau96I	GGNCC	6 cut(s)	122, 158, 203, 710, 774, 926
SchI	GAGTC	2 cut(s)	438, 947
ScrFI	CCNGG	2 cut(s)	212, 247
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	59, 346
SgrAI	CRCCGGYG	1 cut(s)	542
SinI	GGWCC	5 cut(s)	122, 158, 710, 774, 926
SmiMI	CAYNNNNRTG	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	935
SmoI	CTYRAG	1 cut(s)	935
Sse9I	AATT	5 cut(s)	85, 186, 477, 534, 788
SsiI	CCGC	1 cut(s)	675
SspMI	CTAG	3 cut(s)	47, 311, 662
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	210, 245
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	4 cut(s)	505, 598, 650, 782
TaiI	ACGT	2 cut(s)	729, 900
TaqI	TCGA	4 cut(s)	99, 141, 606, 706
TasI	AATT	5 cut(s)	85, 186, 477, 534, 788
TatI	WGTACW	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	3 cut(s)	41, 374, 768
Tru9I	TTAA	3 cut(s)	41, 374, 768
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	2 cut(s)	545, 592
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	2 cut(s)	545, 592
TspDTI	ATGAA	2 cut(s)	17, 900
TspGWI	ACGGA	3 cut(s)	236, 428, 981
TspRI	CASTG	1 cut(s)	787
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	5 cut(s)	122, 158, 710, 774, 926
XapI	RAATTY	2 cut(s)	186, 788
XspI	CTAG	3 cut(s)	47, 311, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.