Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

909587 .. 910426

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGACCCAAATACTCCAGCCAATAACTTGCGCCAAATGATAGAAGACCAACCCGCACCGACCCAGTTGATCACCCTTGACTTTCCTCCTCCTCCACCTTCTCCTACACTACCCCAACCTCCTCAGCCTCCTCCTCCTCCACCATCACATTCTCTTGCTCTTCTTCCTCTTGTAATACCACCCACTTCTGAAGCTACAGTAGTACAGCAGCTACAGCTTGAAACACCAAAGGAGGCAACAGCACAGCAGGGAAAGAGTACTCCCATGGCCTCGAGCTCTTCCGGTAAGCACCCCAGGTACCGGGGAATCCGCTGCCGGGGAGAGAAATGGGTGTCGGAAATCCGAGAGCCGCGCAAGACCAAGCGAATATGGCTCGGCACTTTCCCAACTCCGGAGATGGCTGCAGCCGCCTATGACGTGGCGGCGCTGGCTCTGAAACGCGAGGATGCTATTCTCAACTTTCCTGGTTCCATCAAGTCGTATCCAGTCCCGGCATCCATGTCTGCCCTGGATATACGTGCTGCGGCGACTGCTGCAGCTACTGCAGCAGCAGCCGAGACAACACTGAAGACGAGTGGCTCTAGGGAGAGTACTCCGAGTAGTGTTGGACAACAACAGAAAGAGTATGATGATATGCTGAGTATTAATAGCAGTGCTTTGGCGTCGTCTGTGGGAGCAGACTTTATGGACGAGGAAGAGATTTTTGGGATGCCGAATTTGCTGGTGGACATGGCTGAAGGAATGCTGGTTTCTCCGCCAAGAATAAACTCGCCGCCTTCTGATTATGACTCGCCGGAGTATTCCGACGGAGGAGAGAGTCTTTGGAACTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

280

Amino Acids

29.91

Weight (kDa)

4.73

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	99 - 147	6.7e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AccII	CGCG	2 cut(s)	355, 444
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	8 cut(s)	57, 313, 353, 411, 425, 527, 758, 776
AcsI	RAATTY	1 cut(s)	718
AcuI	CTGAAG	3 cut(s)	213, 590, 759
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	4 cut(s)	207, 262, 302, 595
AfiI	CCNNNNNNNGG	3 cut(s)	303, 319, 394
AgsI	TTSAA	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	3 cut(s)	296, 466, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AluBI	AGCT	5 cut(s)	197, 214, 220, 279, 542
AluI	AGCT	5 cut(s)	197, 214, 220, 279, 542
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	718
AseI	ATTAAT	1 cut(s)	648
Asp718I	GGTACC	1 cut(s)	300
AspLEI	GCGC	3 cut(s)	36, 357, 430
AsuC2I	CCSGG	3 cut(s)	305, 320, 494
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	281
BbsI	GAAGAC	2 cut(s)	54, 578
Bbv12I	GWGCWC	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	126
BccI	CCATC	3 cut(s)	154, 394, 482
BciT130I	CCWGG	3 cut(s)	298, 468, 512
BciVI	GTATCC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	3 cut(s)	305, 320, 494
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	5 cut(s)	198, 215, 405, 537, 546
BfoI	RGCGCY	1 cut(s)	431
BfuI	GTATCC	1 cut(s)	495
BmcAI	AGTACT	2 cut(s)	262, 595
Bme1390I	CCNGG	6 cut(s)	298, 305, 320, 468, 494, 512
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	302, 472
BmrFI	CCNGG	6 cut(s)	298, 305, 320, 468, 494, 512
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	439, 506, 702
BmuI	ACTGGG	1 cut(s)	61
BpiI	GAAGAC	2 cut(s)	54, 578
Bpu10I	CCTNAGC	1 cut(s)	126
BpuMI	CCSGG	3 cut(s)	305, 320, 494
BsaAI	YACGTR	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	665
BsaJI	CCNNGG	5 cut(s)	267, 296, 304, 319, 510
BsaWI	WCCGGW	2 cut(s)	284, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	303, 319, 394
Bse1I	ACTGG	2 cut(s)	67, 488
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	298, 468, 512
BseDI	CCNNGG	5 cut(s)	267, 296, 304, 319, 510
BseGI	GGATG	3 cut(s)	454, 497, 717
BseLI	CCNNNNNNNGG	3 cut(s)	303, 319, 394
BseMII	CTCAG	2 cut(s)	140, 632
BseNI	ACTGG	2 cut(s)	67, 488
BseRI	GAGGAG	7 cut(s)	81, 84, 114, 123, 126, 129, 828
Bsh1236I	CGCG	2 cut(s)	355, 444
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	6 cut(s)	285, 304, 319, 395, 494, 797
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	3 cut(s)	303, 319, 394
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	8 cut(s)	57, 313, 353, 411, 425, 527, 758, 776
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	139, 633
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	355, 444
BspLI	GGNNCC	2 cut(s)	302, 472
BspMAI	CTGCAG	3 cut(s)	409, 541, 550
BspQI	GCTCTTC	2 cut(s)	168, 286
BspT107I	GGYRCC	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	67, 488
BssECI	CCNNGG	5 cut(s)	267, 296, 304, 319, 510
BssMI	GATC	1 cut(s)	72
BssNI	GRCGYC	1 cut(s)	665
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	3 cut(s)	298, 468, 512
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	3 cut(s)	168, 286, 693
BstACI	GRCGYC	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	126, 641
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	454, 497, 717
BstFNI	CGCG	2 cut(s)	355, 444
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	3 cut(s)	36, 357, 430
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	72
BstNI	CCWGG	3 cut(s)	298, 468, 512
BstSCI	CCNGG	6 cut(s)	296, 303, 318, 466, 492, 510
BstSFI	CTRYAG	5 cut(s)	198, 215, 405, 537, 546
BstUI	CGCG	2 cut(s)	355, 444
BstV2I	GAAGAC	2 cut(s)	54, 578
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	267
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	454, 497, 717
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	566, 661
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	3 cut(s)	36, 357, 430
CseI	GACGC	1 cut(s)	654
Csp6I	GTAC	4 cut(s)	206, 261, 301, 594
CviAII	CATG	3 cut(s)	268, 502, 733
CviQI	GTAC	4 cut(s)	206, 261, 301, 594
DdeI	CTNAG	2 cut(s)	126, 641
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eam1104I	CTCTTC	3 cut(s)	168, 286, 693
EarI	CTCTTC	3 cut(s)	168, 286, 693
EciI	GGCGGA	1 cut(s)	747
Ecl136II	GAGCTC	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	3 cut(s)	213, 590, 759
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	279
EcoRII	CCWGG	3 cut(s)	296, 466, 510
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	271, 505, 736
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	3 cut(s)	267, 501, 732
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	72
FokI	GGATG	3 cut(s)	461, 484, 724
FriOI	GRGCYC	1 cut(s)	281
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	3 cut(s)	35, 356, 429
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	6 cut(s)	285, 304, 319, 395, 494, 797
HgaI	GACGC	1 cut(s)	654
HhaI	GCGC	3 cut(s)	36, 357, 430
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	3 cut(s)	271, 505, 736
Hin6I	GCGC	3 cut(s)	34, 355, 428
HinP1I	GCGC	3 cut(s)	34, 355, 428
HinfI	GANTC	3 cut(s)	309, 791, 820
HpaII	CCGG	6 cut(s)	285, 304, 319, 395, 494, 797
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188I	TCNGA	7 cut(s)	193, 340, 347, 438, 600, 784, 808
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	1 cut(s)	730
Hpy99I	CGWCG	2 cut(s)	670, 812
HpyAV	CCTTC	3 cut(s)	111, 734, 789
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	420, 520
HpyCH4V	TGCA	3 cut(s)	407, 539, 548
HpyF3I	CTNAG	2 cut(s)	126, 641
HpySE526I	ACGT	2 cut(s)	420, 520
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	3 cut(s)	271, 505, 736
HspAI	GCGC	3 cut(s)	34, 355, 428
Kpn2I	TCCGGA	1 cut(s)	394
KpnI	GGTACC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	72
LguI	GCTCTTC	2 cut(s)	168, 286
LmnI	GCTCC	1 cut(s)	677
LweI	GCATC	3 cut(s)	439, 506, 702
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	2 cut(s)	420, 520
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	6 cut(s)	59, 155, 158, 273, 583, 710
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	718
MlyI	GAGTC	2 cut(s)	785, 829
MmeI	TCCRAC	3 cut(s)	318, 589, 831
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	6 cut(s)	285, 304, 319, 395, 494, 797
MspR9I	CCNGG	6 cut(s)	298, 305, 320, 468, 494, 512
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	3 cut(s)	298, 468, 512
MvnI	CGCG	2 cut(s)	355, 444
NciI	CCSGG	3 cut(s)	305, 320, 494
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	3 cut(s)	271, 505, 736
NlaIV	GGNNCC	2 cut(s)	302, 472
NmeAIII	GCCGAG	2 cut(s)	357, 583
PaeR7I	CTCGAG	1 cut(s)	274
PciSI	GCTCTTC	2 cut(s)	168, 286
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	309
PleI	GAGTC	2 cut(s)	785, 828
PpsI	GAGTC	2 cut(s)	785, 828
Ppu21I	YACGTR	1 cut(s)	521
PshBI	ATTAAT	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	281
Psp6I	CCWGG	3 cut(s)	296, 466, 510
PspGI	CCWGG	3 cut(s)	296, 466, 510
PspN4I	GGNNCC	2 cut(s)	302, 472
PspXI	VCTCGAGB	1 cut(s)	274
PstI	CTGCAG	3 cut(s)	409, 541, 550
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	4 cut(s)	207, 262, 302, 595
RsaNI	GTAC	4 cut(s)	206, 261, 301, 594
SacI	GAGCTC	1 cut(s)	281
SapI	GCTCTTC	2 cut(s)	168, 286
SaqAI	TTAA	1 cut(s)	648
Sau3AI	GATC	1 cut(s)	72
ScaI	AGTACT	2 cut(s)	262, 595
SchI	GAGTC	2 cut(s)	785, 829
ScrFI	CCNGG	6 cut(s)	298, 305, 320, 468, 494, 512
SduI	GDGCHC	1 cut(s)	281
SfaNI	GCATC	3 cut(s)	439, 506, 702
SfcI	CTRYAG	5 cut(s)	198, 215, 405, 537, 546
Sfr274I	CTCGAG	1 cut(s)	274
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	718
SsiI	CCGC	8 cut(s)	57, 313, 353, 411, 425, 527, 758, 776
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	281
StyD4I	CCNGG	6 cut(s)	296, 303, 318, 466, 492, 510
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	423, 523
TaqI	TCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	718
TatI	WGTACW	3 cut(s)	205, 260, 593
TauI	GCSGC	5 cut(s)	355, 413, 428, 530, 778
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	2 cut(s)	573, 661
TspGWI	ACGGA	1 cut(s)	825
TspRI	CASTG	2 cut(s)	573, 661
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	274
XspI	CTAG	1 cut(s)	585
ZrmI	AGTACT	2 cut(s)	262, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.