Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

10079683 .. 10080225

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCATCAAACCCTTCCCGGAAGCAGTCTAGGTACCATGGAATCCGGAGTCGGGGCGGAAAATGGGTGTCCGAGATCCGAGAGCCACGTAAGACTAGACGTATATGGCTTGGGACTTTCCCAACTGCGGAGATGGCTGCAGCAGCCTATGACGTGGCCGCACTCGCTCTCAAGCGCGGCGATGCTGTTCTCAACTTTCCTAGCTCCATGGACTCGTATCCTGTGCCAGCATCCACGTCTCCACAGGACATTCGTAGTGCTGCTGCCGCTGCTGCAGCAGCAGCAGCACTACAAGGGAATGAGGAGCCGGATAACAGTCTGAAGCTCATAGAGAAGAAGACGAAGTACGAATACGATATGATGATGATGAGTAGTACGAGTTTGGCGTCATCTGTGGGAATGGATGAAGAAGAGCTTTTCGGGATGCCAAATTTGCTGGCGAACATGGCAGAGGGAATGCTTGTGTCTCCGCCGAGACCGTCTGATTATCCTGACTCGTCCGGCAATTCAGACGGATTAGATAGTCGTCTATGGAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

181

Amino Acids

19.55

Weight (kDa)

5.5

Isoelectric Point (pI)

71.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	6 cut(s)	57, 128, 159, 177, 267, 470
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	3 cut(s)	35, 347, 376
AfiI	CCNNNNNNNGG	2 cut(s)	52, 127
AjiI	CACGTC	2 cut(s)	154, 237
AluBI	AGCT	4 cut(s)	204, 325, 415, 537
AluI	AGCT	4 cut(s)	204, 325, 415, 537
Alw26I	GTCTC	3 cut(s)	243, 469, 471
AlwI	GGATC	1 cut(s)	70
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	1 cut(s)	430
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	4 cut(s)	329, 335, 361, 367
BbsI	GAAGAC	1 cut(s)	344
BccI	CCATC	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	243, 469, 471
BfaI	CTAG	3 cut(s)	30, 96, 201
BfmI	CTRYAG	2 cut(s)	138, 273
BfuI	GTATCC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	19
BmgBI	CACGTC	2 cut(s)	154, 237
BmiI	GGNNCC	2 cut(s)	35, 306
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	4 cut(s)	14, 172, 239, 414
BpiI	GAAGAC	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	37, 207
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 127
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	37, 207
BseGI	GGATG	3 cut(s)	230, 409, 429
BseLI	CCNNNNNNNGG	2 cut(s)	52, 127
BseRI	GAGGAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	19, 46, 308, 501
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	52, 127
BsmAI	GTCTC	3 cut(s)	243, 469, 471
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	75
Bsp19I	CCATGG	2 cut(s)	37, 207
BspACI	CCGC	6 cut(s)	57, 128, 159, 177, 267, 470
BspANI	GGCC	1 cut(s)	158
BspEI	TCCGGA	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	35, 306
BspMAI	CTGCAG	2 cut(s)	142, 277
BspPI	GGATC	1 cut(s)	70
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	33
BspTNI	GGTCTC	1 cut(s)	469
BssECI	CCNNGG	2 cut(s)	37, 207
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	37, 207
Bst4CI	ACNGT	2 cut(s)	317, 480
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	228, 438
BstDSI	CCRYGG	2 cut(s)	37, 207
BstF5I	GGATG	3 cut(s)	230, 409, 429
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	78
BstMAI	GTCTC	3 cut(s)	243, 469, 471
BstMBI	GATC	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	2 cut(s)	138, 273
BstUI	CGCG	1 cut(s)	177
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	2 cut(s)	37, 207
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	2 cut(s)	154, 237
BtsCI	GGATG	3 cut(s)	230, 409, 429
Cac8I	GCNNGC	2 cut(s)	228, 438
CfoI	GCGC	1 cut(s)	177
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	34, 346, 375
CviAII	CATG	3 cut(s)	38, 208, 445
CviQI	GTAC	3 cut(s)	34, 346, 375
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	2 cut(s)	72, 459
Eco130I	CCWWGG	2 cut(s)	37, 207
Eco31I	GGTCTC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	37, 207
ErhI	CCWWGG	2 cut(s)	37, 207
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	41, 211, 448
FaiI	YATR	9 cut(s)	39, 104, 106, 150, 209, 329, 359, 446, 532
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	37, 207, 444
FokI	GGATG	3 cut(s)	217, 416, 436
FspBI	CTAG	3 cut(s)	30, 96, 201
GlaI	GCGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	4 cut(s)	19, 46, 308, 501
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	41, 211, 448
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	42, 49, 212, 494
HpaII	CCGG	4 cut(s)	19, 46, 308, 501
Hpy188I	TCNGA	5 cut(s)	73, 80, 321, 484, 511
Hpy188III	TCNNGA	3 cut(s)	46, 421, 491
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	317, 480
HpyCH4IV	ACGT	4 cut(s)	88, 100, 153, 236
HpyCH4V	TGCA	2 cut(s)	140, 275
HpySE526I	ACGT	4 cut(s)	88, 100, 153, 236
Hsp92I	GRCGYC	1 cut(s)	386
Hsp92II	CATG	3 cut(s)	41, 211, 448
HspAI	GCGC	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	75
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	209, 304, 534
LpnPI	CCDG	9 cut(s)	32, 59, 230, 234, 240, 321, 422, 504, 514
LweI	GCATC	4 cut(s)	14, 172, 239, 414
MaeI	CTAG	3 cut(s)	30, 96, 201
MaeII	ACGT	4 cut(s)	88, 100, 153, 236
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	346, 349, 419, 422
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	2 cut(s)	430, 505
MlyI	GAGTC	3 cut(s)	58, 206, 488
MnlI	CCTC	2 cut(s)	295, 445
MroI	TCCGGA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	4 cut(s)	19, 46, 308, 501
MspR9I	CCNGG	1 cut(s)	19
Mva1269I	GAATGC	1 cut(s)	462
MvnI	CGCG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	2 cut(s)	37, 207
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	41, 211, 448
NlaIV	GGNNCC	2 cut(s)	35, 306
NmeAIII	GCCGAG	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	383
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	17
PleI	GAGTC	3 cut(s)	57, 206, 488
PpsI	GAGTC	3 cut(s)	57, 206, 488
Ppu21I	YACGTR	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	35, 306
PstI	CTGCAG	2 cut(s)	142, 277
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	3 cut(s)	35, 347, 376
RsaNI	GTAC	3 cut(s)	34, 346, 375
SapI	GCTCTTC	1 cut(s)	405
Sau3AI	GATC	1 cut(s)	75
SchI	GAGTC	3 cut(s)	58, 206, 488
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	9 cut(s)	35, 91, 103, 156, 206, 239, 327, 417, 539
SfaNI	GCATC	4 cut(s)	14, 172, 239, 414
SfcI	CTRYAG	2 cut(s)	138, 273
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	430, 505
SsiI	CCGC	6 cut(s)	57, 128, 159, 177, 267, 470
SspMI	CTAG	3 cut(s)	30, 96, 201
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	37, 207
TaaI	ACNGT	2 cut(s)	317, 480
TaiI	ACGT	4 cut(s)	91, 103, 156, 239
TasI	AATT	2 cut(s)	430, 505
TauI	GCSGC	3 cut(s)	161, 180, 269
TfiI	GAWTC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	1 cut(s)	528
XapI	RAATTY	1 cut(s)	430
XspI	CTAG	3 cut(s)	30, 96, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.