Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

52911850 .. 52912707

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTGACCCAAATACTCCTCCCACTAACTTATTGCGCCAAATAACAATAGACCAACCCACACTGATCCAGTTCACCTCTGACTTTCCTCCTCCTCCTCCTTCTCCTACACTACACCAGCCTCCTCAGCCTCCTCTTCCAGCTCCATCACATTCTCTTGCTCTTCTTCCTCTTGACCACCCGTGTGGAACACCAACCATACCCATAATACCCCCCACTTCTGAAGCAACAGTAGTACAGCAGCTACAGCTTCAAACACCCAAGGAGGCAACAGCACAGCAGGGAAAGACTCCCATGGCCTCGAGCTCTTCTGGCAAGCACCCGAGGTACCGGGGAATCCGAAGCCGGGGAGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGCAAGACCAAGCGAATATGGCTCGGGACTTTCCCAACTCCTGAGATGGCTGCAGCCGCCTATGACGTGGCGGCACTGGCTCTGAAACGTGAGGATGCTGTTCTCAACTTTCCTAGTTTTATCAAGTCGTATCCAGTACCGGCATCCATGTCTGCCCTGGACATTTGTGCTGCCGCCGCTGCAGCCGCCACTGCAGTAGGCCCTGCAACGCTGAAAACGAGTGGCTCCACGGAGACTTCAAATGTTGGACAACAACAGAAAGAGTATGATGATATGTTGAGTATTAATAACAGTACTTTGGCGTCGTCTGTGGGAGCAGACTTTATGGACGAGGAAGAGATTTTTGGGATGCCGAATTTGCTGGTGGACATGGCTGAGGGAATGCTGGTTTCTCCGCCGAGGATAAACTCGCCGCCTTCTGATTATGACTCGCCGGAGAATTCAGAAGGAGGAGAGAGTCTCTGGAACTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

30.51

Weight (kDa)

4.88

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 156	2.3e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	327
AccII	CGCG	2 cut(s)	375, 382
AciI	CCGC	9 cut(s)	373, 380, 438, 452, 555, 558, 567, 776, 794
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	736, 820
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	683
AfaI	GTAC	4 cut(s)	237, 329, 519, 676
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	254, 621
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	1 cut(s)	537
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AleI	CACNNNNGTG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	143, 244, 250, 306
AluI	AGCT	4 cut(s)	143, 244, 250, 306
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	608, 845
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	3 cut(s)	301, 322, 404
AoxI	GGCC	2 cut(s)	297, 580
ApeKI	GCWGC	6 cut(s)	241, 431, 434, 551, 560, 563
ApoI	RAATTY	2 cut(s)	736, 820
AseI	ATTAAT	1 cut(s)	666
Asp718I	GGTACC	1 cut(s)	327
AspLEI	GCGC	2 cut(s)	39, 384
AspS9I	GGNCC	1 cut(s)	581
AsuC2I	CCSGG	2 cut(s)	332, 347
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	3 cut(s)	301, 322, 404
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	308
BbvCI	CCTCAGC	2 cut(s)	126, 756
BbvI	GCAGC	6 cut(s)	253, 418, 446, 538, 547, 575
BccI	CCATC	2 cut(s)	154, 421
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	1 cut(s)	522
BcnI	CCSGG	2 cut(s)	332, 347
BcoDI	GTCTC	2 cut(s)	608, 845
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	4 cut(s)	245, 432, 561, 573
BfuI	GTATCC	1 cut(s)	522
BmcAI	AGTACT	1 cut(s)	676
Bme1390I	CCNGG	3 cut(s)	332, 347, 539
BmeT110I	CYCGRG	3 cut(s)	301, 322, 404
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	329, 607
BmrFI	CCNGG	3 cut(s)	332, 347, 539
BmsI	GCATC	3 cut(s)	466, 533, 720
BplI	GAGNNNNNCTC	2 cut(s)	825, 857
Bpu10I	CCTNAGC	2 cut(s)	126, 756
BpuMI	CCSGG	2 cut(s)	332, 347
BsaHI	GRCGYC	1 cut(s)	683
BsaJI	CCNNGG	8 cut(s)	261, 294, 323, 331, 346, 537, 609, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse118I	RCCGGY	1 cut(s)	520
Bse1I	ACTGG	3 cut(s)	70, 462, 515
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	8 cut(s)	261, 294, 323, 331, 346, 537, 609, 779
BseGI	GGATG	3 cut(s)	481, 524, 735
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	3 cut(s)	140, 414, 747
BseNI	ACTGG	3 cut(s)	70, 462, 515
BseRI	GAGGAG	7 cut(s)	9, 81, 84, 87, 114, 123, 846
BseXI	GCAGC	6 cut(s)	253, 418, 446, 538, 547, 575
Bsh1236I	CGCG	2 cut(s)	375, 382
BshFI	GGCC	2 cut(s)	299, 582
BshNI	GGYRCC	1 cut(s)	327
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	3 cut(s)	301, 322, 404
BsiSI	CCGG	4 cut(s)	331, 346, 521, 815
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	2 cut(s)	608, 845
BsmFI	GGGAC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	2 cut(s)	299, 582
BsoBI	CYCGRG	3 cut(s)	301, 322, 404
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	9 cut(s)	373, 380, 438, 452, 555, 558, 567, 776, 794
BspANI	GGCC	2 cut(s)	299, 582
BspCNI	CTCAG	3 cut(s)	139, 415, 748
BspFNI	CGCG	2 cut(s)	375, 382
BspLI	GGNNCC	2 cut(s)	329, 607
BspMAI	CTGCAG	3 cut(s)	436, 565, 577
BspPI	GGATC	1 cut(s)	61
BspQI	GCTCTTC	2 cut(s)	168, 313
BspT107I	GGYRCC	1 cut(s)	327
BsrFI	RCCGGY	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	70, 462, 515
BssAI	RCCGGY	1 cut(s)	520
BssECI	CCNNGG	8 cut(s)	261, 294, 323, 331, 346, 537, 609, 779
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	261, 294
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	232, 674
Bst6I	CTCTTC	4 cut(s)	141, 168, 313, 711
BstACI	GRCGYC	1 cut(s)	683
BstC8I	GCNNGC	2 cut(s)	317, 377
BstDEI	CTNAG	3 cut(s)	126, 423, 756
BstDSI	CCRYGG	2 cut(s)	294, 609
BstF5I	GGATG	3 cut(s)	481, 524, 735
BstFNI	CGCG	2 cut(s)	375, 382
BstHHI	GCGC	2 cut(s)	39, 384
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	2 cut(s)	608, 845
BstMBI	GATC	1 cut(s)	66
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	3 cut(s)	330, 345, 537
BstSFI	CTRYAG	4 cut(s)	245, 432, 561, 573
BstUI	CGCG	2 cut(s)	375, 382
BstV1I	GCAGC	6 cut(s)	253, 418, 446, 538, 547, 575
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	299, 582
BtgI	CCRYGG	2 cut(s)	294, 609
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	481, 524, 735
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	62, 455, 570
Cac8I	GCNNGC	2 cut(s)	317, 377
CfoI	GCGC	2 cut(s)	39, 384
Cfr10I	RCCGGY	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	581
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	4 cut(s)	236, 328, 518, 675
CviAII	CATG	3 cut(s)	295, 529, 751
CviQI	GTAC	4 cut(s)	236, 328, 518, 675
DdeI	CTNAG	3 cut(s)	126, 423, 756
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	4 cut(s)	141, 168, 313, 711
EarI	CTCTTC	4 cut(s)	141, 168, 313, 711
EciI	GGCGGA	1 cut(s)	765
Ecl136II	GAGCTC	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	261, 294
Eco24I	GRGCYC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	3 cut(s)	301, 322, 404
EcoICRI	GAGCTC	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	1 cut(s)	537
EcoT14I	CCWWGG	2 cut(s)	261, 294
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	2 cut(s)	261, 294
FaeI	CATG	3 cut(s)	298, 532, 754
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	294, 528, 750
FokI	GGATG	3 cut(s)	488, 511, 742
FriOI	GRGCYC	1 cut(s)	308
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	2 cut(s)	38, 383
HaeIII	GGCC	2 cut(s)	299, 582
HapII	CCGG	4 cut(s)	331, 346, 521, 815
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	2 cut(s)	39, 384
Hin1I	GRCGYC	1 cut(s)	683
Hin1II	CATG	3 cut(s)	298, 532, 754
Hin6I	GCGC	2 cut(s)	37, 382
HinP1I	GCGC	2 cut(s)	37, 382
HinfI	GANTC	4 cut(s)	289, 336, 809, 838
HpaII	CCGG	4 cut(s)	331, 346, 521, 815
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	75, 748
Hpy188I	TCNGA	7 cut(s)	82, 223, 341, 367, 465, 802, 826
Hpy188III	TCNNGA	4 cut(s)	173, 406, 422, 844
Hpy8I	GTNNAC	2 cut(s)	75, 748
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	3 cut(s)	111, 807, 821
HpyCH4III	ACNGT	2 cut(s)	232, 674
HpyCH4IV	ACGT	2 cut(s)	447, 469
HpyCH4V	TGCA	4 cut(s)	434, 563, 575, 587
HpyF3I	CTNAG	3 cut(s)	126, 423, 756
HpySE526I	ACGT	2 cut(s)	447, 469
Hsp92I	GRCGYC	1 cut(s)	683
Hsp92II	CATG	3 cut(s)	298, 532, 754
HspAI	GCGC	2 cut(s)	37, 382
KpnI	GGTACC	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	66
LguI	GCTCTTC	2 cut(s)	168, 313
LmnI	GCTCC	3 cut(s)	148, 611, 695
Lsp1109I	GCAGC	6 cut(s)	253, 418, 446, 538, 547, 575
LweI	GCATC	3 cut(s)	466, 533, 720
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	2 cut(s)	447, 469
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	128, 155, 158, 300, 728
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	2 cut(s)	736, 820
MlyI	GAGTC	3 cut(s)	283, 803, 847
MmeI	TCCRAC	2 cut(s)	345, 607
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	4 cut(s)	331, 346, 521, 815
MspR9I	CCNGG	3 cut(s)	332, 347, 539
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	2 cut(s)	375, 382
NciI	CCSGG	2 cut(s)	332, 347
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	3 cut(s)	298, 532, 754
NlaIV	GGNNCC	2 cut(s)	329, 607
NmeAIII	GCCGAG	1 cut(s)	804
OliI	CACNNNNGTG	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	301
PciSI	GCTCTTC	2 cut(s)	168, 313
PcsI	WCGNNNNNNNCGW	1 cut(s)	596
PctI	GAATGC	1 cut(s)	768
PfeI	GAWTC	1 cut(s)	336
PleI	GAGTC	3 cut(s)	283, 803, 846
PpsI	GAGTC	3 cut(s)	283, 803, 846
PshBI	ATTAAT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	329, 607
PspPI	GGNCC	1 cut(s)	581
PspXI	VCTCGAGB	1 cut(s)	301
PstI	CTGCAG	3 cut(s)	436, 565, 577
RsaI	GTAC	4 cut(s)	237, 329, 519, 676
RsaNI	GTAC	4 cut(s)	236, 328, 518, 675
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	308
SapI	GCTCTTC	2 cut(s)	168, 313
SaqAI	TTAA	1 cut(s)	666
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	581
ScaI	AGTACT	1 cut(s)	676
SchI	GAGTC	3 cut(s)	283, 803, 847
ScrFI	CCNGG	3 cut(s)	332, 347, 539
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	8 cut(s)	80, 145, 246, 252, 308, 329, 450, 472
SfaNI	GCATC	3 cut(s)	466, 533, 720
SfcI	CTRYAG	4 cut(s)	245, 432, 561, 573
Sfr274I	CTCGAG	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	736, 820
SsiI	CCGC	9 cut(s)	373, 380, 438, 452, 555, 558, 567, 776, 794
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	3 cut(s)	330, 345, 537
StyI	CCWWGG	2 cut(s)	261, 294
TaaI	ACNGT	2 cut(s)	232, 674
TaiI	ACGT	2 cut(s)	450, 472
TaqI	TCGA	1 cut(s)	302
TasI	AATT	2 cut(s)	736, 820
TatI	WGTACW	2 cut(s)	235, 674
TauI	GCSGC	7 cut(s)	382, 440, 455, 557, 560, 569, 796
TfiI	GAWTC	1 cut(s)	336
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	3 cut(s)	69, 462, 577
TseI	GCWGC	6 cut(s)	241, 431, 434, 551, 560, 563
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	3 cut(s)	69, 462, 577
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	2 cut(s)	736, 820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XhoI	CTCGAG	1 cut(s)	301
XspI	CTAG	1 cut(s)	495
ZrmI	AGTACT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.