Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

51364815 .. 51371447

Gene Structure 6633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTGTCCTGTCATGTCTTCCACGCAATACCAAGCCATAACCGAACCCCGCACCGCCCTACGCGGCGCACCGATCACCCGGACCTACGCGGGTTACGCAAACCATCAAGAACCACGCCGTCGCACGGATCATTAGGAACTGCACCGCCATCCCCGCACAACACAACCACCACGCCTAAGATGTCATTTGGAATGTGGAACACCGACTATACCCATAATACCCCCACTTCTGAAGCAACAGTAGTACAGCAGCTACAGCATCAACCACCCAAGGAGGCAACAGCACCGCAGGGAAAGACTCCCATGGCCTCGAGCTCTTCTGGCAAGCACCCGAGGTACCGGGGAATCCGAAGCCGGGGAGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGCAAGACCAAGCGAATATGGCTCGGGACTTTCCCAACGCCTGAGATGGCTGCAGCCGCCTATGACGTGGCGGCACTGGCTCTGAAACGTGAGGATGCTGTTCTCAACTTTCCTAGTTTTATCAAGTCGTATCCAGTACCGGCATCCATGTCCGCCCTGGACATTCGTGCTGCCGCCGCTGCAGCCGCTACTGCAGTAGGCCCGGCAACGCTGAAAACGAGTGGCTCCACGGAGACTTCAAATGTTGGACAACAACAGAAAGAGTATGATGATATGTTGAGTATTAATAACAGTACTTTGGCGTCGTCTGTGGGAGCAGACTTTATGGACGAGGAAGAGATTTTTGGGATGCCGAATTTGCTGGTGGACATGGCTGAGGGAATGCTGGTTTCTCCGCCGAGGATAAACTCGCCGCCTTCTGATTATGACTCGCCGGAGAATTCAGAAGGAGGAGAGAGTCTCTGGAACTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

288

Amino Acids

31.28

Weight (kDa)

7.17

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	111 - 159	2.3e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccII	CGCG	4 cut(s)	64, 90, 384, 391
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	745, 829
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	4 cut(s)	246, 338, 528, 685
AfiI	CCNNNNNNNGG	2 cut(s)	125, 355
AgsI	TTSAA	1 cut(s)	630
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
AluBI	AGCT	2 cut(s)	253, 315
AluI	AGCT	2 cut(s)	253, 315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	2 cut(s)	617, 854
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	3 cut(s)	310, 331, 413
AoxI	GGCC	2 cut(s)	306, 589
ApeKI	GCWGC	6 cut(s)	250, 440, 443, 560, 569, 572
ApoI	RAATTY	2 cut(s)	745, 829
AseI	ATTAAT	1 cut(s)	675
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	69, 393
AspS9I	GGNCC	2 cut(s)	82, 590
AsuC2I	CCSGG	4 cut(s)	80, 341, 356, 593
AsuHPI	GGTGA	1 cut(s)	68
AvaI	CYCGRG	3 cut(s)	310, 331, 413
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	765
BbvI	GCAGC	6 cut(s)	262, 427, 455, 547, 556, 584
BccI	CCATC	3 cut(s)	112, 157, 430
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	531
BcnI	CCSGG	4 cut(s)	80, 341, 356, 593
BcoDI	GTCTC	2 cut(s)	617, 854
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	4 cut(s)	254, 441, 570, 582
BfuI	GTATCC	1 cut(s)	531
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	5 cut(s)	80, 341, 356, 548, 593
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	3 cut(s)	310, 331, 413
BmgBI	CACGTC	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	82, 590
BmiI	GGNNCC	2 cut(s)	338, 616
BmrFI	CCNGG	5 cut(s)	80, 341, 356, 548, 593
BmsI	GCATC	4 cut(s)	268, 475, 542, 729
BpiI	GAAGAC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	834, 866
Bpu10I	CCTNAGC	1 cut(s)	765
BpuMI	CCSGG	4 cut(s)	80, 341, 356, 593
BsaHI	GRCGYC	1 cut(s)	692
BsaJI	CCNNGG	8 cut(s)	270, 303, 332, 340, 355, 546, 618, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 355
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	471, 524
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	8 cut(s)	270, 303, 332, 340, 355, 546, 618, 788
BseGI	GGATG	4 cut(s)	149, 490, 533, 744
BseLI	CCNNNNNNNGG	2 cut(s)	125, 355
BseMII	CTCAG	2 cut(s)	423, 756
BseNI	ACTGG	2 cut(s)	471, 524
BseRI	GAGGAG	1 cut(s)	855
BseXI	GCAGC	6 cut(s)	262, 427, 455, 547, 556, 584
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	4 cut(s)	64, 90, 384, 391
BshFI	GGCC	2 cut(s)	308, 591
BshNI	GGYRCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	317
BsiHKCI	CYCGRG	3 cut(s)	310, 331, 413
BsiSI	CCGG	6 cut(s)	80, 340, 355, 530, 593, 824
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	125, 355
BsmAI	GTCTC	2 cut(s)	617, 854
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	2 cut(s)	308, 591
BsoBI	CYCGRG	3 cut(s)	310, 331, 413
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	73, 128
Bsp19I	CCATGG	1 cut(s)	303
BspANI	GGCC	2 cut(s)	308, 591
BspCNI	CTCAG	2 cut(s)	424, 757
BspFNI	CGCG	4 cut(s)	64, 90, 384, 391
BspLI	GGNNCC	2 cut(s)	338, 616
BspMAI	CTGCAG	3 cut(s)	445, 574, 586
BspPI	GGATC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	471, 524
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	8 cut(s)	270, 303, 332, 340, 355, 546, 618, 788
BssMI	GATC	2 cut(s)	73, 128
BssNI	GRCGYC	1 cut(s)	692
BssT1I	CCWWGG	2 cut(s)	270, 303
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	241, 683
Bst6I	CTCTTC	2 cut(s)	322, 720
BstACI	GRCGYC	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	326, 386
BstDEI	CTNAG	3 cut(s)	177, 432, 765
BstDSI	CCRYGG	2 cut(s)	303, 618
BstF5I	GGATG	4 cut(s)	149, 490, 533, 744
BstFNI	CGCG	4 cut(s)	64, 90, 384, 391
BstHHI	GCGC	2 cut(s)	69, 393
BstKTI	GATC	2 cut(s)	76, 131
BstMAI	GTCTC	2 cut(s)	617, 854
BstMBI	GATC	2 cut(s)	73, 128
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	5 cut(s)	78, 339, 354, 546, 591
BstSFI	CTRYAG	4 cut(s)	254, 441, 570, 582
BstUI	CGCG	4 cut(s)	64, 90, 384, 391
BstV1I	GCAGC	6 cut(s)	262, 427, 455, 547, 556, 584
BstV2I	GAAGAC	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	308, 591
BtgI	CCRYGG	2 cut(s)	303, 618
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	4 cut(s)	149, 490, 533, 744
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	326, 386
CfoI	GCGC	2 cut(s)	69, 393
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	82, 590
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	4 cut(s)	245, 337, 527, 684
CviAII	CATG	4 cut(s)	14, 304, 538, 760
CviQI	GTAC	4 cut(s)	245, 337, 527, 684
DdeI	CTNAG	3 cut(s)	177, 432, 765
DpnI	GATC	2 cut(s)	75, 130
DpnII	GATC	2 cut(s)	73, 128
Eam1104I	CTCTTC	2 cut(s)	322, 720
EarI	CTCTTC	2 cut(s)	322, 720
EciI	GGCGGA	2 cut(s)	532, 774
Ecl136II	GAGCTC	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	270, 303
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	3 cut(s)	310, 331, 413
EcoICRI	GAGCTC	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	270, 303
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	270, 303
FaeI	CATG	4 cut(s)	17, 307, 541, 763
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	13, 303, 537, 759
FauI	CCCGC	3 cut(s)	57, 83, 162
FokI	GGATG	4 cut(s)	136, 497, 520, 751
FriOI	GRGCYC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	2 cut(s)	68, 392
HaeIII	GGCC	2 cut(s)	308, 591
HapII	CCGG	6 cut(s)	80, 340, 355, 530, 593, 824
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	2 cut(s)	69, 393
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	4 cut(s)	17, 307, 541, 763
Hin6I	GCGC	2 cut(s)	67, 391
HinP1I	GCGC	2 cut(s)	67, 391
HinfI	GANTC	4 cut(s)	298, 345, 818, 847
HpaII	CCGG	6 cut(s)	80, 340, 355, 530, 593, 824
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	6 cut(s)	232, 350, 376, 474, 811, 835
Hpy188III	TCNNGA	3 cut(s)	108, 415, 853
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	2 cut(s)	124, 697
HpyAV	CCTTC	2 cut(s)	816, 830
HpyCH4III	ACNGT	2 cut(s)	241, 683
HpyCH4IV	ACGT	2 cut(s)	456, 478
HpyCH4V	TGCA	4 cut(s)	143, 443, 572, 584
HpyF3I	CTNAG	3 cut(s)	177, 432, 765
HpySE526I	ACGT	2 cut(s)	456, 478
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	4 cut(s)	17, 307, 541, 763
HspAI	GCGC	2 cut(s)	67, 391
KpnI	GGTACC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	73, 128
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	620, 704
Lsp1109I	GCAGC	6 cut(s)	262, 427, 455, 547, 556, 584
LweI	GCATC	4 cut(s)	268, 475, 542, 729
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	456, 478
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	75, 130
MboI	GATC	2 cut(s)	73, 128
MboII	GAAGA	3 cut(s)	10, 309, 737
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	2 cut(s)	745, 829
MlyI	GAGTC	3 cut(s)	292, 812, 856
MmeI	TCCRAC	2 cut(s)	354, 616
MnlI	CCTC	9 cut(s)	268, 319, 327, 353, 475, 715, 760, 783, 833
MseI	TTAA	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	6 cut(s)	80, 340, 355, 530, 593, 824
MspR9I	CCNGG	5 cut(s)	80, 341, 356, 548, 593
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	4 cut(s)	64, 90, 384, 391
NciI	CCSGG	4 cut(s)	80, 341, 356, 593
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	73, 128
NlaIII	CATG	4 cut(s)	17, 307, 541, 763
NlaIV	GGNNCC	2 cut(s)	338, 616
NmeAIII	GCCGAG	1 cut(s)	813
PaeR7I	CTCGAG	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	605
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	1 cut(s)	345
PleI	GAGTC	3 cut(s)	292, 812, 855
PpsI	GAGTC	3 cut(s)	292, 812, 855
PshBI	ATTAAT	1 cut(s)	675
Psp124BI	GAGCTC	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	338, 616
PspPI	GGNCC	2 cut(s)	82, 590
PspXI	VCTCGAGB	1 cut(s)	310
PstI	CTGCAG	3 cut(s)	445, 574, 586
RsaI	GTAC	4 cut(s)	246, 338, 528, 685
RsaNI	GTAC	4 cut(s)	245, 337, 527, 684
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	675
Sau3AI	GATC	2 cut(s)	73, 128
Sau96I	GGNCC	2 cut(s)	82, 590
ScaI	AGTACT	1 cut(s)	685
SchI	GAGTC	3 cut(s)	292, 812, 856
ScrFI	CCNGG	5 cut(s)	80, 341, 356, 548, 593
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	6 cut(s)	87, 255, 317, 338, 459, 481
SfaNI	GCATC	4 cut(s)	268, 475, 542, 729
SfcI	CTRYAG	4 cut(s)	254, 441, 570, 582
Sfr274I	CTCGAG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	745, 829
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	5 cut(s)	78, 339, 354, 546, 591
StyI	CCWWGG	2 cut(s)	270, 303
TaaI	ACNGT	2 cut(s)	241, 683
TaiI	ACGT	2 cut(s)	459, 481
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	745, 829
TatI	WGTACW	2 cut(s)	244, 683
TauI	GCSGC	8 cut(s)	67, 391, 449, 464, 566, 569, 578, 805
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	1 cut(s)	471
TseI	GCWGC	6 cut(s)	250, 440, 443, 560, 569, 572
TspGWI	ACGGA	2 cut(s)	141, 635
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	675
XapI	RAATTY	2 cut(s)	745, 829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XhoI	CTCGAG	1 cut(s)	310
XspI	CTAG	1 cut(s)	504
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.