Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Forward (+)

14346129 .. 14347987

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGACCCAAATACTCCTCCCACTAACTTGCGCCAAATAACAATAGACCAACCCACACCGACCCAGTTCACCTCTGACTTTCCTCCTCCTCCTCCTTCTCCTAAACTACACCAGCCTCCTCTTCCAGCTCCATCACATTCTCTTGCTCTTCTTCCTCTTGACCACCCGTGTGGAACACCAACTATACCCATAATACCCCCCACTTCTGAAGCAACAGTAGTACAGCAGCTACAGCTTCAACCACCCAAGGAGGCAACAGCACCGCAGGGAAAGACTCCCATGGCCTCGAGCTCTTCTGGCAAGCACCCGAGGTACCGGGGAATCAGAAGCCGGGGAGGAAAATGGGTGTCGGAAATCCGCGAGCCGCGCAAGACCAAGCGAATATGGCTCGGGACTTTCCCAACTCCTGAGATGGCTGCAGCCGCCTATGACGTGGCGGCACTGGCTCTGAAACGTGAGGATGCTGTTCTCAACTTTCCTAGTTTTATCAAGTCGTATCCAGTACCGGCATCCATGTCTGCCCTGGACATTCGTGCTGCCGCCGCTGCAGCAGCTACTGCAGTAGGCCCGGCAACGCTGAAAACGAGTGGCTCCACGGAGACTTCAAATGTTGGACAACAACAGAAAGAGTATGATGATATGTTGAGTATTAATAACAGTACTTTGGCGTCGTCTGTGGGAGCAGACTTTATGGACGAGGAAGAGATTTTTGGGATGCCGAATTTGCTGGTGGACATGGCTGAGGGAATGCTGGTTTCTCCGCCGAGGATAAACTCGCCGCCTTCTGATTATGACTCGCCGGAGAATTCAGAAGGAGGAGAGAGTCTCTGGAACTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

281

Amino Acids

30.09

Weight (kDa)

5.07

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 152	2.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AccII	CGCG	2 cut(s)	363, 370
AciI	CCGC	9 cut(s)	266, 361, 368, 426, 440, 543, 546, 764, 782
AcsI	RAATTY	2 cut(s)	724, 808
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	671
AfaI	GTAC	4 cut(s)	225, 317, 507, 664
AgsI	TTSAA	2 cut(s)	242, 609
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AleI	CACNNNNGTG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	131, 232, 238, 294, 557
AluI	AGCT	5 cut(s)	131, 232, 238, 294, 557
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	596, 833
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	3 cut(s)	289, 310, 392
AoxI	GGCC	2 cut(s)	285, 568
ApeKI	GCWGC	7 cut(s)	229, 419, 422, 539, 548, 551, 554
ApoI	RAATTY	2 cut(s)	724, 808
AseI	ATTAAT	1 cut(s)	654
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	2 cut(s)	36, 372
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	3 cut(s)	320, 335, 572
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	3 cut(s)	289, 310, 392
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	744
BbvI	GCAGC	7 cut(s)	241, 406, 434, 526, 535, 563, 566
BccI	CCATC	2 cut(s)	142, 409
BciT130I	CCWGG	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	3 cut(s)	320, 335, 572
BcoDI	GTCTC	2 cut(s)	596, 833
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	4 cut(s)	233, 420, 549, 561
BfuI	GTATCC	1 cut(s)	510
BmcAI	AGTACT	1 cut(s)	664
Bme1390I	CCNGG	4 cut(s)	320, 335, 527, 572
BmeT110I	CYCGRG	3 cut(s)	289, 310, 392
BmgBI	CACGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	317, 595
BmrFI	CCNGG	4 cut(s)	320, 335, 527, 572
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	454, 521, 708
BmuI	ACTGGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	813, 845
Bpu10I	CCTNAGC	1 cut(s)	744
BpuMI	CCSGG	3 cut(s)	320, 335, 572
BsaHI	GRCGYC	1 cut(s)	671
BsaJI	CCNNGG	8 cut(s)	249, 282, 311, 319, 334, 525, 597, 767
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	67, 450, 503
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	8 cut(s)	249, 282, 311, 319, 334, 525, 597, 767
BseGI	GGATG	3 cut(s)	469, 512, 723
BseMII	CTCAG	2 cut(s)	402, 735
BseNI	ACTGG	3 cut(s)	67, 450, 503
BseRI	GAGGAG	6 cut(s)	9, 78, 81, 84, 111, 834
BseXI	GCAGC	7 cut(s)	241, 406, 434, 526, 535, 563, 566
Bsh1236I	CGCG	2 cut(s)	363, 370
BshFI	GGCC	2 cut(s)	287, 570
BshNI	GGYRCC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	3 cut(s)	289, 310, 392
BsiSI	CCGG	5 cut(s)	319, 334, 509, 572, 803
BslFI	GGGAC	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	596, 833
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	756
BsnI	GGCC	2 cut(s)	287, 570
BsoBI	CYCGRG	3 cut(s)	289, 310, 392
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	9 cut(s)	266, 361, 368, 426, 440, 543, 546, 764, 782
BspANI	GGCC	2 cut(s)	287, 570
BspCNI	CTCAG	2 cut(s)	403, 736
BspFNI	CGCG	2 cut(s)	363, 370
BspLI	GGNNCC	2 cut(s)	317, 595
BspMAI	CTGCAG	3 cut(s)	424, 553, 565
BspQI	GCTCTTC	2 cut(s)	156, 301
BspT107I	GGYRCC	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	67, 450, 503
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	8 cut(s)	249, 282, 311, 319, 334, 525, 597, 767
BssNI	GRCGYC	1 cut(s)	671
BssT1I	CCWWGG	2 cut(s)	249, 282
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	220, 662
Bst6I	CTCTTC	4 cut(s)	129, 156, 301, 699
BstACI	GRCGYC	1 cut(s)	671
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	305, 365
BstDEI	CTNAG	2 cut(s)	411, 744
BstDSI	CCRYGG	2 cut(s)	282, 597
BstF5I	GGATG	3 cut(s)	469, 512, 723
BstFNI	CGCG	2 cut(s)	363, 370
BstHHI	GCGC	2 cut(s)	36, 372
BstMAI	GTCTC	2 cut(s)	596, 833
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	4 cut(s)	318, 333, 525, 570
BstSFI	CTRYAG	4 cut(s)	233, 420, 549, 561
BstUI	CGCG	2 cut(s)	363, 370
BstV1I	GCAGC	7 cut(s)	241, 406, 434, 526, 535, 563, 566
BstXI	CCANNNNNNTGG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	287, 570
BtgI	CCRYGG	2 cut(s)	282, 597
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	469, 512, 723
BtsIMutI	CAGTG	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	305, 365
CaiI	CAGNNNCTG	1 cut(s)	560
CfoI	GCGC	2 cut(s)	36, 372
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	569
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	224, 316, 506, 663
CviAII	CATG	3 cut(s)	283, 517, 739
CviQI	GTAC	4 cut(s)	224, 316, 506, 663
DdeI	CTNAG	2 cut(s)	411, 744
Eam1104I	CTCTTC	4 cut(s)	129, 156, 301, 699
EarI	CTCTTC	4 cut(s)	129, 156, 301, 699
EciI	GGCGGA	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	249, 282
Eco24I	GRGCYC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	231
Eco88I	CYCGRG	3 cut(s)	289, 310, 392
EcoICRI	GAGCTC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	249, 282
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	2 cut(s)	249, 282
FaeI	CATG	3 cut(s)	286, 520, 742
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	282, 516, 738
FokI	GGATG	3 cut(s)	476, 499, 730
FriOI	GRGCYC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	483
GlaI	GCGC	2 cut(s)	35, 371
HaeIII	GGCC	2 cut(s)	287, 570
HapII	CCGG	5 cut(s)	319, 334, 509, 572, 803
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	2 cut(s)	36, 372
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	286, 520, 742
Hin6I	GCGC	2 cut(s)	34, 370
HinP1I	GCGC	2 cut(s)	34, 370
HinfI	GANTC	4 cut(s)	277, 324, 797, 826
HpaII	CCGG	5 cut(s)	319, 334, 509, 572, 803
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	72, 736
Hpy188I	TCNGA	7 cut(s)	79, 211, 329, 355, 453, 790, 814
Hpy188III	TCNNGA	4 cut(s)	161, 394, 410, 832
Hpy8I	GTNNAC	2 cut(s)	72, 736
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	3 cut(s)	108, 795, 809
HpyCH4III	ACNGT	2 cut(s)	220, 662
HpyCH4IV	ACGT	2 cut(s)	435, 457
HpyCH4V	TGCA	3 cut(s)	422, 551, 563
HpyF3I	CTNAG	2 cut(s)	411, 744
HpySE526I	ACGT	2 cut(s)	435, 457
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	3 cut(s)	286, 520, 742
HspAI	GCGC	2 cut(s)	34, 370
KpnI	GGTACC	1 cut(s)	319
LguI	GCTCTTC	2 cut(s)	156, 301
LmnI	GCTCC	3 cut(s)	136, 599, 683
Lsp1109I	GCAGC	7 cut(s)	241, 406, 434, 526, 535, 563, 566
LweI	GCATC	3 cut(s)	454, 521, 708
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	2 cut(s)	435, 457
MboII	GAAGA	5 cut(s)	116, 143, 146, 288, 716
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	724, 808
MlyI	GAGTC	3 cut(s)	271, 791, 835
MmeI	TCCRAC	2 cut(s)	333, 595
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	5 cut(s)	319, 334, 509, 572, 803
MspR9I	CCNGG	4 cut(s)	320, 335, 527, 572
Mva1269I	GAATGC	1 cut(s)	756
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	2 cut(s)	363, 370
NciI	CCSGG	3 cut(s)	320, 335, 572
NcoI	CCATGG	1 cut(s)	282
NlaIII	CATG	3 cut(s)	286, 520, 742
NlaIV	GGNNCC	2 cut(s)	317, 595
NmeAIII	GCCGAG	1 cut(s)	792
OliI	CACNNNNGTG	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	289
PciSI	GCTCTTC	2 cut(s)	156, 301
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PctI	GAATGC	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	324
PleI	GAGTC	3 cut(s)	271, 791, 834
PpsI	GAGTC	3 cut(s)	271, 791, 834
PshBI	ATTAAT	1 cut(s)	654
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	2 cut(s)	317, 595
PspPI	GGNCC	1 cut(s)	569
PspXI	VCTCGAGB	1 cut(s)	289
PstI	CTGCAG	3 cut(s)	424, 553, 565
PstNI	CAGNNNCTG	1 cut(s)	560
RsaI	GTAC	4 cut(s)	225, 317, 507, 664
RsaNI	GTAC	4 cut(s)	224, 316, 506, 663
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	2 cut(s)	156, 301
SaqAI	TTAA	1 cut(s)	654
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	3 cut(s)	271, 791, 835
ScrFI	CCNGG	4 cut(s)	320, 335, 527, 572
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	9 cut(s)	77, 133, 234, 240, 296, 317, 438, 460, 559
SfaNI	GCATC	3 cut(s)	454, 521, 708
SfcI	CTRYAG	4 cut(s)	233, 420, 549, 561
Sfr274I	CTCGAG	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	2 cut(s)	724, 808
SsiI	CCGC	9 cut(s)	266, 361, 368, 426, 440, 543, 546, 764, 782
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	318, 333, 525, 570
StyI	CCWWGG	2 cut(s)	249, 282
TaaI	ACNGT	2 cut(s)	220, 662
TaiI	ACGT	2 cut(s)	438, 460
TaqI	TCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	724, 808
TatI	WGTACW	2 cut(s)	223, 662
TauI	GCSGC	6 cut(s)	370, 428, 443, 545, 548, 784
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	7 cut(s)	229, 419, 422, 539, 548, 551, 554
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	450
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	2 cut(s)	724, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XhoI	CTCGAG	1 cut(s)	289
XspI	CTAG	1 cut(s)	483
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.