Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

10105430 .. 10105987

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCATCAAGCTCTTGCGGGAACCACACTAGGTACCATGGAATCCGGTGCCGGGGCGGAAAATGGGTGTCCGAAATCCGTGAGCCACGTAAGACTAGGCGGATATGGCTCGGGACCTACCCAACCCCGGAGATGGCAGCGTCTGCCTATGACGTGGCCGCGCTCGCTCTCAAGGGCGGTGATGCTGTTCTAAACTTTCCGAGCTCCATTGCCTTGTATCCAGTGCCAGCATCCAGGTCACCGGAGGACATTCGCAGTGCCGCCGCCGCTGCTGCCGCTGCTGCAGCTGCTGTTTCTGCTGCACTACAGTCGAATGAGGAGGCCAATAACAGCCTGGAGCTCAAGGAGAGTCCGAAGAAGCAAGAGGACAACATGACGACGATGATGAATAGTACTAGTTTGGCGTCGTCTGTGGGAATGGACGAAGAAGAGCTTTTCGGGATGCCAAATTTGCTGGCCGAGATGGCAGAGGGAATGCTGTTGTCTCCTCCGAGACCGCCTGATTATCCCGAATCGGGCAATTCAGACGGAGGAGAAAGTGGTCTGTGGAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

186

Amino Acids

19.63

Weight (kDa)

4.89

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 48
AccII	CGCG	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	156, 456
AcsI	RAATTY	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	2 cut(s)	35, 394
AfiI	CCNNNNNNNGG	4 cut(s)	52, 127, 133, 515
AhlI	ACTAGT	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	233, 333
AluBI	AGCT	6 cut(s)	12, 204, 287, 340, 433, 552
AluI	AGCT	6 cut(s)	12, 204, 287, 340, 433, 552
Alw21I	GWGCWC	2 cut(s)	206, 342
Alw26I	GTCTC	2 cut(s)	487, 489
AlwNI	CAGNNNCTG	2 cut(s)	143, 290
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	156, 321, 456
ApeKI	GCWGC	8 cut(s)	137, 269, 272, 278, 281, 284, 287, 299
ApoI	RAATTY	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	53, 128
AsuHPI	GGTGA	2 cut(s)	191, 231
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	114
BanI	GGYRCC	2 cut(s)	33, 48
BanII	GRGCYC	2 cut(s)	206, 342
Bbv12I	GWGCWC	2 cut(s)	206, 342
BbvI	GCAGC	8 cut(s)	149, 256, 259, 265, 268, 274, 286, 296
BccI	CCATC	2 cut(s)	127, 457
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BciT130I	CCWGG	2 cut(s)	235, 335
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	53, 128
BcoDI	GTCTC	2 cut(s)	487, 489
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	30, 96, 396
BfmI	CTRYAG	2 cut(s)	282, 305
BfuI	GTATCC	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	464
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	4 cut(s)	53, 128, 235, 335
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	4 cut(s)	23, 35, 50, 115
BmrFI	CCNGG	4 cut(s)	53, 128, 235, 335
BmsI	GCATC	4 cut(s)	14, 172, 239, 432
BpmI	CTGGAG	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	155, 326
BpuMI	CCSGG	2 cut(s)	53, 128
BsaAI	YACGTR	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	37, 52, 126
BsaWI	WCCGGW	2 cut(s)	45, 241
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 127, 133, 515
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	235, 335
BseDI	CCNNGG	3 cut(s)	37, 52, 126
BseGI	GGATG	2 cut(s)	230, 447
BseLI	CCNNNNNNNGG	4 cut(s)	52, 127, 133, 515
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	221
BseRI	GAGGAG	3 cut(s)	332, 477, 546
BseXI	GCAGC	8 cut(s)	149, 256, 259, 265, 268, 274, 286, 296
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	158, 323, 458
BshNI	GGYRCC	2 cut(s)	33, 48
BsiHKAI	GWGCWC	2 cut(s)	206, 342
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	46, 52, 128, 242
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	4 cut(s)	52, 127, 133, 515
BsmAI	GTCTC	2 cut(s)	487, 489
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	480
BsnI	GGCC	3 cut(s)	158, 323, 458
Bso31I	GGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	206, 342
Bsp19I	CCATGG	1 cut(s)	37
BspANI	GGCC	3 cut(s)	158, 323, 458
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	4 cut(s)	23, 35, 50, 115
BspMAI	CTGCAG	1 cut(s)	286
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	2 cut(s)	33, 48
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	37, 52, 126
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	235, 335
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	404
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	165, 228, 456
BstDSI	CCRYGG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	230, 447
BstFNI	CGCG	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	487, 489
BstNI	CCWGG	2 cut(s)	235, 335
BstPI	GGTNACC	1 cut(s)	237
BstSCI	CCNGG	4 cut(s)	51, 126, 233, 333
BstSFI	CTRYAG	2 cut(s)	282, 305
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	8 cut(s)	149, 256, 259, 265, 268, 274, 286, 296
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	158, 323, 458
BtgI	CCRYGG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	230, 447
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	228, 262
Cac8I	GCNNGC	3 cut(s)	165, 228, 456
CaiI	CAGNNNCTG	2 cut(s)	143, 290
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	2 cut(s)	129, 393
Csp6I	GTAC	2 cut(s)	34, 393
CviAII	CATG	2 cut(s)	38, 373
CviQI	GTAC	2 cut(s)	34, 393
EaeI	YGGCCR	2 cut(s)	156, 456
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	2 cut(s)	72, 115
Ecl136II	GAGCTC	2 cut(s)	204, 340
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	206, 342
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	114
Eco53kI	GAGCTC	2 cut(s)	204, 340
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	237
EcoICRI	GAGCTC	2 cut(s)	204, 340
EcoO109I	RGGNCCY	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	233, 333
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	206, 342
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	41, 376
FaiI	YATR	4 cut(s)	39, 106, 150, 374
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	37, 372
FauI	CCCGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	217, 454
FriOI	GRGCYC	2 cut(s)	206, 342
FspBI	CTAG	3 cut(s)	30, 96, 396
GlaI	GCGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	158, 323, 458
HapII	CCGG	4 cut(s)	46, 52, 128, 242
HgaI	GACGC	2 cut(s)	129, 393
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	41, 376
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	42, 349, 512
HpaII	CCGG	4 cut(s)	46, 52, 128, 242
HphI	GGTGA	2 cut(s)	191, 231
Hpy188I	TCNGA	5 cut(s)	73, 201, 354, 492, 526
Hpy188III	TCNNGA	3 cut(s)	112, 439, 509
Hpy99I	CGWCG	2 cut(s)	382, 409
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	2 cut(s)	88, 153
HpyCH4V	TGCA	2 cut(s)	284, 302
HpySE526I	ACGT	2 cut(s)	88, 153
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	2 cut(s)	41, 376
HspAI	GCGC	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	3 cut(s)	209, 337, 549
Lsp1109I	GCAGC	8 cut(s)	149, 256, 259, 265, 268, 274, 286, 296
LweI	GCATC	4 cut(s)	14, 172, 239, 432
MaeI	CTAG	3 cut(s)	30, 96, 396
MaeII	ACGT	2 cut(s)	88, 153
MaeIII	GTNAC	1 cut(s)	237
MboII	GAAGA	3 cut(s)	367, 437, 440
MhlI	GDGCHC	2 cut(s)	206, 342
MluCI	AATT	2 cut(s)	448, 520
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	7 cut(s)	238, 310, 313, 358, 463, 498, 524
MspA1I	CMGCKG	3 cut(s)	269, 278, 287
MspI	CCGG	4 cut(s)	46, 52, 128, 242
MspR9I	CCNGG	4 cut(s)	53, 128, 235, 335
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	2 cut(s)	235, 335
MvnI	CGCG	1 cut(s)	161
NciI	CCSGG	2 cut(s)	53, 128
NcoI	CCATGG	1 cut(s)	37
NlaIII	CATG	2 cut(s)	41, 376
NlaIV	GGNNCC	4 cut(s)	23, 35, 50, 115
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	423
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	42, 512
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
Ppu21I	YACGTR	1 cut(s)	89
PpuMI	RGGWCCY	1 cut(s)	114
Psp124BI	GAGCTC	2 cut(s)	206, 342
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	233, 333
PspEI	GGTNACC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	233, 333
PspN4I	GGNNCC	4 cut(s)	23, 35, 50, 115
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	2 cut(s)	143, 290
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	2 cut(s)	35, 394
RsaNI	GTAC	2 cut(s)	34, 393
SacI	GAGCTC	2 cut(s)	206, 342
SapI	GCTCTTC	1 cut(s)	423
Sau96I	GGNCC	1 cut(s)	114
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	4 cut(s)	53, 128, 235, 335
SduI	GDGCHC	2 cut(s)	206, 342
SfaNI	GCATC	4 cut(s)	14, 172, 239, 432
SfcI	CTRYAG	2 cut(s)	282, 305
SinI	GGWCC	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	170, 341
SmoI	CTYRAG	2 cut(s)	170, 341
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	2 cut(s)	448, 520
SspMI	CTAG	3 cut(s)	30, 96, 396
SstI	GAGCTC	2 cut(s)	206, 342
StyD4I	CCNGG	4 cut(s)	51, 126, 233, 333
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	2 cut(s)	91, 156
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	448, 520
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	5 cut(s)	161, 263, 266, 269, 278
TfiI	GAWTC	2 cut(s)	42, 512
TscAI	CASTG	2 cut(s)	228, 262
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	8 cut(s)	137, 269, 272, 278, 281, 284, 287, 299
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	401
TspGWI	ACGGA	2 cut(s)	68, 543
TspRI	CASTG	2 cut(s)	228, 262
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XspI	CTAG	3 cut(s)	30, 96, 396
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.