Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Forward (+)

16651440 .. 16653137

Gene Structure 1698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG180500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTGACCCAAATACTCCTCCCACTAACTTGCGCCAAATAACAATAGACCAACCCACACCGACCCAGTTCACCTCTGACTTTCCTCCTCCTCCTTCTCCTACACTACACCAGCCTCTTCTTCCAGCTCCATCACATTCTCTTGCTCTTCTTCCTCTTGACCACCCGTGTGGAACACCAATTATACCCATAATATCCCCCACCTCTGAAGCAACAGTAGTACAGCAGCTACAGCTTCAAACACCCAAGGAGGCAACAGCACCGCAGGGAAAGACTCCCATGGCCTCGAGCTCTTCTGGAAAGCACCCGAGGTACCGGGGAATCCGAAGCCGGGGAGGAAAATGGGTGTCGGAAATCCGCGAGCCACGCAAGACCAAGCGAATATGGCTCGGGACTTTCCCAACTCCTGAGATGGCTGCAGCCGCCTATGACGTGGCGGCACTGGCTCTGAAACGTGAGGATGCTGTTCTCAACTTTCCTAGTTTTATCAAGTCGTATCCAGTACCGGCATCCATGTCTGCCCTTGACATTCGTGCTGCCGCCGCTGCAGCCGCTAGTGCAGTAGGCCCGGCAACGCTGAAAAAGAGTGGCTCCACGGGGACTTCAAATGTTGGACAACAACAGAAAGAGTATGAGGATATGTTGAGTATTAATAACAGTACTTTGGCGTCGTCTGTGGGAGCAGACTTTATGGACGAGGAAGAGATTTTTGGAATGCCGAATTTGCTGGTGGACATGGCTGAGGGAATGCTGGTTTCTCCGCCCAGGATAAACTCGCCGCCTTCTGATTATGACTCGCCGGAGAATTCAGAAGGAGGAGAGAGTCTCTGGAACTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

280

Amino Acids

29.94

Weight (kDa)

5.17

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	103 - 151	2.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccII	CGCG	1 cut(s)	360
AciI	CCGC	9 cut(s)	263, 358, 423, 437, 540, 543, 552, 761, 779
AcsI	RAATTY	2 cut(s)	721, 805
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	4 cut(s)	222, 314, 504, 661
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	239, 606
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	764
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AleI	CACNNNNGTG	1 cut(s)	168
AluBI	AGCT	4 cut(s)	128, 229, 235, 291
AluI	AGCT	4 cut(s)	128, 229, 235, 291
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	830
Ama87I	CYCGRG	3 cut(s)	286, 307, 389
AoxI	GGCC	2 cut(s)	282, 565
ApeKI	GCWGC	6 cut(s)	226, 416, 419, 536, 545, 548
ApoI	RAATTY	2 cut(s)	721, 805
AseI	ATTAAT	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	1 cut(s)	566
AsuC2I	CCSGG	3 cut(s)	317, 332, 569
AsuHPI	GGTGA	1 cut(s)	64
AvaI	CYCGRG	3 cut(s)	286, 307, 389
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	6 cut(s)	238, 403, 431, 523, 532, 560
BccI	CCATC	2 cut(s)	139, 406
BciT130I	CCWGG	1 cut(s)	766
BciVI	GTATCC	1 cut(s)	507
BcnI	CCSGG	3 cut(s)	317, 332, 569
BcoDI	GTCTC	1 cut(s)	830
BfaI	CTAG	2 cut(s)	480, 555
BfmI	CTRYAG	3 cut(s)	230, 417, 546
BfuI	GTATCC	1 cut(s)	507
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	4 cut(s)	317, 332, 569, 766
BmeT110I	CYCGRG	3 cut(s)	286, 307, 389
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	314, 592
BmrFI	CCNGG	4 cut(s)	317, 332, 569, 766
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	2 cut(s)	451, 518
BmuI	ACTGGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	810, 842
Bpu10I	CCTNAGC	1 cut(s)	741
BpuMI	CCSGG	3 cut(s)	317, 332, 569
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	7 cut(s)	246, 279, 308, 316, 331, 594, 764
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	3 cut(s)	67, 447, 500
BseBI	CCWGG	1 cut(s)	766
BseDI	CCNNGG	7 cut(s)	246, 279, 308, 316, 331, 594, 764
BseGI	GGATG	2 cut(s)	466, 509
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	399, 732
BseNI	ACTGG	3 cut(s)	67, 447, 500
BseRI	GAGGAG	4 cut(s)	9, 78, 81, 831
BseXI	GCAGC	6 cut(s)	238, 403, 431, 523, 532, 560
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	284, 567
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	293
BsiHKCI	CYCGRG	3 cut(s)	286, 307, 389
BsiSI	CCGG	5 cut(s)	316, 331, 506, 569, 800
BslFI	GGGAC	2 cut(s)	406, 613
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	830
BsmFI	GGGAC	2 cut(s)	406, 613
BsmI	GAATGC	2 cut(s)	720, 753
BsnI	GGCC	2 cut(s)	284, 567
BsoBI	CYCGRG	3 cut(s)	286, 307, 389
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	9 cut(s)	263, 358, 423, 437, 540, 543, 552, 761, 779
BspANI	GGCC	2 cut(s)	284, 567
BspCNI	CTCAG	2 cut(s)	400, 733
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	314, 592
BspMAI	CTGCAG	2 cut(s)	421, 550
BspQI	GCTCTTC	2 cut(s)	153, 298
BspT107I	GGYRCC	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	67, 447, 500
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	7 cut(s)	246, 279, 308, 316, 331, 594, 764
BssNI	GRCGYC	1 cut(s)	668
BssT1I	CCWWGG	2 cut(s)	246, 279
Bst2UI	CCWGG	1 cut(s)	766
Bst4CI	ACNGT	2 cut(s)	217, 659
Bst6I	CTCTTC	4 cut(s)	123, 153, 298, 696
BstACI	GRCGYC	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	408, 741
BstDSI	CCRYGG	2 cut(s)	279, 594
BstF5I	GGATG	2 cut(s)	466, 509
BstFNI	CGCG	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	830
BstNI	CCWGG	1 cut(s)	766
BstSCI	CCNGG	4 cut(s)	315, 330, 567, 764
BstSFI	CTRYAG	3 cut(s)	230, 417, 546
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	6 cut(s)	238, 403, 431, 523, 532, 560
BstXI	CCANNNNNNTGG	1 cut(s)	170
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	284, 567
BtgI	CCRYGG	2 cut(s)	279, 594
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	2 cut(s)	466, 509
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	566
CseI	GACGC	1 cut(s)	657
Csp6I	GTAC	4 cut(s)	221, 313, 503, 660
CviAII	CATG	3 cut(s)	280, 514, 736
CviQI	GTAC	4 cut(s)	221, 313, 503, 660
DdeI	CTNAG	2 cut(s)	408, 741
Eam1104I	CTCTTC	4 cut(s)	123, 153, 298, 696
EarI	CTCTTC	4 cut(s)	123, 153, 298, 696
EciI	GGCGGA	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	246, 279
Eco24I	GRGCYC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	3 cut(s)	286, 307, 389
EcoICRI	GAGCTC	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	764
EcoT14I	CCWWGG	2 cut(s)	246, 279
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	2 cut(s)	246, 279
FaeI	CATG	3 cut(s)	283, 517, 739
FaqI	GGGAC	2 cut(s)	406, 613
FatI	CATG	3 cut(s)	279, 513, 735
FokI	GGATG	2 cut(s)	473, 496
FriOI	GRGCYC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	480, 555
GlaI	GCGC	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	284, 567
HapII	CCGG	5 cut(s)	316, 331, 506, 569, 800
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	3 cut(s)	283, 517, 739
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	4 cut(s)	274, 321, 794, 823
HpaII	CCGG	5 cut(s)	316, 331, 506, 569, 800
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	2 cut(s)	72, 733
Hpy188I	TCNGA	7 cut(s)	79, 208, 326, 352, 450, 787, 811
Hpy188III	TCNNGA	5 cut(s)	158, 297, 391, 407, 829
Hpy8I	GTNNAC	2 cut(s)	72, 733
Hpy99I	CGWCG	1 cut(s)	673
HpyAV	CCTTC	3 cut(s)	105, 792, 806
HpyCH4III	ACNGT	2 cut(s)	217, 659
HpyCH4IV	ACGT	2 cut(s)	432, 454
HpyCH4V	TGCA	3 cut(s)	419, 548, 560
HpyF3I	CTNAG	2 cut(s)	408, 741
HpySE526I	ACGT	2 cut(s)	432, 454
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	3 cut(s)	283, 517, 739
HspAI	GCGC	1 cut(s)	34
KpnI	GGTACC	1 cut(s)	316
LguI	GCTCTTC	2 cut(s)	153, 298
LmnI	GCTCC	3 cut(s)	133, 596, 680
Lsp1109I	GCAGC	6 cut(s)	238, 403, 431, 523, 532, 560
LweI	GCATC	2 cut(s)	451, 518
MaeI	CTAG	2 cut(s)	480, 555
MaeII	ACGT	2 cut(s)	432, 454
MboII	GAAGA	6 cut(s)	110, 113, 140, 143, 285, 713
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	3 cut(s)	180, 721, 805
MlyI	GAGTC	3 cut(s)	268, 788, 832
MmeI	TCCRAC	2 cut(s)	330, 592
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	5 cut(s)	316, 331, 506, 569, 800
MspR9I	CCNGG	4 cut(s)	317, 332, 569, 766
Mva1269I	GAATGC	2 cut(s)	720, 753
MvaI	CCWGG	1 cut(s)	766
MvnI	CGCG	1 cut(s)	360
NciI	CCSGG	3 cut(s)	317, 332, 569
NcoI	CCATGG	1 cut(s)	279
NlaIII	CATG	3 cut(s)	283, 517, 739
NlaIV	GGNNCC	2 cut(s)	314, 592
OliI	CACNNNNGTG	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	286
PciSI	GCTCTTC	2 cut(s)	153, 298
PctI	GAATGC	2 cut(s)	720, 753
PfeI	GAWTC	1 cut(s)	321
PleI	GAGTC	3 cut(s)	268, 788, 831
PpsI	GAGTC	3 cut(s)	268, 788, 831
PshBI	ATTAAT	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	764
PspN4I	GGNNCC	2 cut(s)	314, 592
PspPI	GGNCC	1 cut(s)	566
PspXI	VCTCGAGB	1 cut(s)	286
PstI	CTGCAG	2 cut(s)	421, 550
RsaI	GTAC	4 cut(s)	222, 314, 504, 661
RsaNI	GTAC	4 cut(s)	221, 313, 503, 660
RseI	CAYNNNNRTG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	293
SapI	GCTCTTC	2 cut(s)	153, 298
SaqAI	TTAA	1 cut(s)	651
Sau96I	GGNCC	1 cut(s)	566
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	3 cut(s)	268, 788, 832
ScrFI	CCNGG	4 cut(s)	317, 332, 569, 766
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	9 cut(s)	77, 130, 206, 231, 237, 293, 314, 435, 457
SfaNI	GCATC	2 cut(s)	451, 518
SfcI	CTRYAG	3 cut(s)	230, 417, 546
Sfr274I	CTCGAG	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	180, 721, 805
SsiI	CCGC	9 cut(s)	263, 358, 423, 437, 540, 543, 552, 761, 779
SspMI	CTAG	2 cut(s)	480, 555
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	4 cut(s)	315, 330, 567, 764
StyI	CCWWGG	2 cut(s)	246, 279
TaaI	ACNGT	2 cut(s)	217, 659
TaiI	ACGT	2 cut(s)	435, 457
TaqI	TCGA	1 cut(s)	287
TasI	AATT	3 cut(s)	180, 721, 805
TatI	WGTACW	2 cut(s)	220, 659
TauI	GCSGC	6 cut(s)	425, 440, 542, 545, 554, 781
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	6 cut(s)	226, 416, 419, 536, 545, 548
TspRI	CASTG	1 cut(s)	447
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	2 cut(s)	721, 805
XhoI	CTCGAG	1 cut(s)	286
XspI	CTAG	2 cut(s)	480, 555
ZrmI	AGTACT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.