Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

10065814 .. 10066356

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCATCAAGCCCTTCCGGGAAGCAGTCTAGGTACCATGGAATCCGGAGTCGGGGCGGAAAATGGGTGTCCGAGATTCGAGAGCCACGTAAGACTAGACGTATATGGCTTGGGACTTTCCCAACTGCGGAGATGGCTGCAGCAGCCTATGACGCGGCCGCGCTCGCTCTCAAGCGCGCCGATGCTGTTCTCAACTTTCCAAGCTCCATGGACTCGTATCCTGTGCCAGCATCCATGTCTCCACAGGACATTCGTAGTGCTGCTGCCGCTGCTGCTGCGGCAACAGCACTACAACGGAATGAGGACGCGGATAACAGTCTTAAGGTCACAGAGAGGCAGAAGAAGTACGAATACGATATGACGATGATGAGTAGTACTAGTTTGGCGTCGTCTGTGGGAATGGATGAAGAAGAGCTTTTCGGGATGCCAAATTTGCTGGCGAACATGGCAGAGGGCATGCTTCTGTCTCCACCGAGACCGTCTGATTATCCCGACTCGTCCGGCAATTCAGACGGAGCGGAAAGTCGTCTATGGAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

181

Amino Acids

19.51

Weight (kDa)

5.5

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	33
AccBSI	CCGCTC	1 cut(s)	518
AccII	CGCG	4 cut(s)	155, 161, 177, 308
AccIII	TCCGGA	1 cut(s)	45
AciI	CCGC	8 cut(s)	57, 128, 155, 159, 267, 278, 308, 518
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	386
AfaI	GTAC	3 cut(s)	35, 347, 376
AfiI	CCNNNNNNNGG	2 cut(s)	52, 127
AflII	CTTAAG	1 cut(s)	320
AhlI	ACTAGT	1 cut(s)	377
AluBI	AGCT	3 cut(s)	204, 415, 537
AluI	AGCT	3 cut(s)	204, 415, 537
Alw26I	GTCTC	3 cut(s)	243, 469, 471
Aor13HI	TCCGGA	1 cut(s)	45
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	8 cut(s)	137, 140, 143, 260, 263, 269, 272, 275
ApoI	RAATTY	1 cut(s)	430
Asp718I	GGTACC	1 cut(s)	33
AspLEI	GCGC	3 cut(s)	163, 177, 179
AsuC2I	CCSGG	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbvI	GCAGC	8 cut(s)	124, 152, 155, 247, 250, 256, 259, 262
BccI	CCATC	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	243, 469, 471
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	3 cut(s)	30, 96, 378
BfmI	CTRYAG	1 cut(s)	138
BfrI	CTTAAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	228
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	4 cut(s)	14, 172, 239, 414
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	19
BsaAI	YACGTR	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	37, 207
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 127
BseAI	TCCGGA	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	37, 207
BseGI	GGATG	3 cut(s)	230, 409, 429
BseLI	CCNNNNNNNGG	2 cut(s)	52, 127
BsePI	GCGCGC	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	8 cut(s)	124, 152, 155, 247, 250, 256, 259, 262
Bsh1236I	CGCG	4 cut(s)	155, 161, 177, 308
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	33
BsiEI	CGRYCG	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	18, 46, 501
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	52, 127
BsmAI	GTCTC	3 cut(s)	243, 469, 471
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	45
Bsp19I	CCATGG	2 cut(s)	37, 207
BspACI	CCGC	8 cut(s)	57, 128, 155, 159, 267, 278, 308, 518
BspANI	GGCC	1 cut(s)	158
BspEI	TCCGGA	1 cut(s)	45
BspFNI	CGCG	4 cut(s)	155, 161, 177, 308
BspLI	GGNNCC	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	142
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	469
BsrBI	CCGCTC	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	37, 207
BssHII	GCGCGC	1 cut(s)	175
BssNI	GRCGYC	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	37, 207
Bst4CI	ACNGT	2 cut(s)	317, 480
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	386
BstAFI	CTTAAG	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	5 cut(s)	165, 177, 228, 438, 458
BstDSI	CCRYGG	2 cut(s)	37, 207
BstF5I	GGATG	3 cut(s)	230, 409, 429
BstFNI	CGCG	4 cut(s)	155, 161, 177, 308
BstHHI	GCGC	3 cut(s)	163, 177, 179
BstMAI	GTCTC	3 cut(s)	243, 469, 471
BstMCI	CGRYCG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	4 cut(s)	155, 161, 177, 308
BstV1I	GCAGC	8 cut(s)	124, 152, 155, 247, 250, 256, 259, 262
BstZI	CGGCCG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	2 cut(s)	37, 207
BtsCI	GGATG	3 cut(s)	230, 409, 429
Cac8I	GCNNGC	5 cut(s)	165, 177, 228, 438, 458
CciNI	GCGGCCGC	1 cut(s)	156
CfoI	GCGC	3 cut(s)	163, 177, 179
CseI	GACGC	3 cut(s)	161, 314, 375
Csp6I	GTAC	3 cut(s)	34, 346, 375
CviAII	CATG	5 cut(s)	38, 208, 235, 445, 457
CviJI	RGCY	9 cut(s)	12, 85, 109, 137, 146, 158, 204, 415, 537
CviKI_1	RGCY	9 cut(s)	12, 85, 109, 137, 146, 158, 204, 415, 537
CviQI	GTAC	3 cut(s)	34, 346, 375
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EciI	GGCGGA	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	37, 207
Eco31I	GGTCTC	1 cut(s)	469
Eco52I	CGGCCG	1 cut(s)	156
EcoT14I	CCWWGG	2 cut(s)	37, 207
ErhI	CCWWGG	2 cut(s)	37, 207
FaeI	CATG	5 cut(s)	41, 211, 238, 448, 460
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	5 cut(s)	37, 207, 234, 444, 456
FokI	GGATG	3 cut(s)	217, 416, 436
FspBI	CTAG	3 cut(s)	30, 96, 378
GlaI	GCGC	3 cut(s)	162, 176, 178
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	3 cut(s)	18, 46, 501
HgaI	GACGC	3 cut(s)	161, 314, 375
HhaI	GCGC	3 cut(s)	163, 177, 179
Hin1I	GRCGYC	1 cut(s)	386
Hin1II	CATG	5 cut(s)	41, 211, 238, 448, 460
Hin6I	GCGC	3 cut(s)	161, 175, 177
HinP1I	GCGC	3 cut(s)	161, 175, 177
HinfI	GANTC	5 cut(s)	42, 49, 76, 212, 494
HpaII	CCGG	3 cut(s)	18, 46, 501
Hpy188I	TCNGA	3 cut(s)	73, 484, 511
Hpy188III	TCNNGA	4 cut(s)	46, 80, 421, 491
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	24
HpyCH4III	ACNGT	2 cut(s)	317, 480
HpyCH4IV	ACGT	2 cut(s)	88, 100
HpyCH4V	TGCA	1 cut(s)	140
HpySE526I	ACGT	2 cut(s)	88, 100
Hsp92I	GRCGYC	1 cut(s)	386
Hsp92II	CATG	5 cut(s)	41, 211, 238, 448, 460
HspAI	GCGC	3 cut(s)	161, 175, 177
Kpn2I	TCCGGA	1 cut(s)	45
KpnI	GGTACC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	209, 515, 534
LpnPI	CCDG	7 cut(s)	31, 59, 230, 234, 240, 422, 514
Lsp1109I	GCAGC	8 cut(s)	124, 152, 155, 247, 250, 256, 259, 262
LweI	GCATC	4 cut(s)	14, 172, 239, 414
MaeI	CTAG	3 cut(s)	30, 96, 378
MaeII	ACGT	2 cut(s)	88, 100
MaeIII	GTNAC	1 cut(s)	325
MbiI	CCGCTC	1 cut(s)	518
MboII	GAAGA	3 cut(s)	352, 419, 422
MluCI	AATT	2 cut(s)	430, 505
MlyI	GAGTC	3 cut(s)	58, 206, 488
MnlI	CCTC	3 cut(s)	295, 327, 445
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	3 cut(s)	18, 46, 501
MspR9I	CCNGG	1 cut(s)	19
MvnI	CGCG	4 cut(s)	155, 161, 177, 308
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	2 cut(s)	37, 207
NlaIII	CATG	5 cut(s)	41, 211, 238, 448, 460
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	325
NotI	GCGGCCGC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	460
PaeI	GCATGC	1 cut(s)	460
PauI	GCGCGC	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	42, 76
PfoI	TCCNGGA	1 cut(s)	17
PleI	GAGTC	3 cut(s)	57, 206, 488
PpsI	GAGTC	3 cut(s)	57, 206, 488
Ppu21I	YACGTR	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	142
PteI	GCGCGC	1 cut(s)	175
RsaI	GTAC	3 cut(s)	35, 347, 376
RsaNI	GTAC	3 cut(s)	34, 346, 375
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	321
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	3 cut(s)	58, 206, 488
ScrFI	CCNGG	1 cut(s)	19
SetI	ASST	7 cut(s)	35, 91, 103, 206, 327, 417, 539
SfaNI	GCATC	4 cut(s)	14, 172, 239, 414
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	2 cut(s)	170, 320
SmoI	CTYRAG	2 cut(s)	170, 320
SpeI	ACTAGT	1 cut(s)	377
SphI	GCATGC	1 cut(s)	460
Sse9I	AATT	2 cut(s)	430, 505
SsiI	CCGC	8 cut(s)	57, 128, 155, 159, 267, 278, 308, 518
SspMI	CTAG	3 cut(s)	30, 96, 378
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	2 cut(s)	37, 207
TaaI	ACNGT	2 cut(s)	317, 480
TaiI	ACGT	2 cut(s)	91, 103
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	430, 505
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	4 cut(s)	158, 161, 269, 281
TfiI	GAWTC	2 cut(s)	42, 76
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	8 cut(s)	137, 140, 143, 260, 263, 269, 272, 275
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	420
TspGWI	ACGGA	2 cut(s)	310, 528
Vha464I	CTTAAG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	460
XspI	CTAG	3 cut(s)	30, 96, 378
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.