Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Forward (+)

9138605 .. 9139399

Gene Structure 795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1067700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTGACCCAAATCCAAATCCAAACACTTCCAATATCGTGCATCAAACGTTAGACCAATCCACACCCACCTATCCACATCTAGTAGTGTTCCCCCTTGACTTTCACCCTCCTCCACCGCACCAAGTCCTCCCACATTCTCTTCTTCCTCTCCACCACCAGACGTGTGAAACTATTGAAATGCCCTCTCCCTCCGCTAGGGCACCACTACAAGTTCAAACACTACCAAAACTTGCTACCATGGCCTCAAGCTCTTCCGGGAAGCACCCCAGGTACCGCGGCATCAGGTGTAGGGGAGGAAAATGGGTATCTGAAATCCGAGAACCACGGAAGACCAAGCGTATTTGGCTTGGCACTTTCCCAACTCCGGAGATGGCTGCAGCCGCGTATGATGTGGCCGCACTTACACTCAAAGGTACCGATGTTGCTCTCAACTTTCCTAGTTTAATTGGATCGTATCCAGTGCCACCGTCCACATCGGCACTTGATATTCGTACTGCCGCCACTACTGCAGCAGCAGCGCTACGAAATAATAGTGACCAGATGGAGAGTCCAAAAATGGGACAGATGCAGAAACACGAGGTTGATGATATGATGATGAGTAGTACAAGTTTGGCTTCTTCTGTAGGATACTTTATGGACGAGGAAGAGCTTTTCCAAATGCCGAATTTGCTGGTGGACATGGCAGAGGGAATGCTGGTGTCTCCGCCGAGAATGAACGACTCTCCACCGTCTGATTATGATGACTTGCCGGGAAATTCAGACGGAAGAGAAGGTCGTCTGTGGAGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

265

Amino Acids

29.0

Weight (kDa)

5.68

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	90 - 139	1.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	273, 416
AccB1I	GGYRCC	3 cut(s)	202, 273, 416
AccII	CGCG	2 cut(s)	279, 386
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	8 cut(s)	119, 195, 277, 279, 384, 399, 501, 707
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	667, 757
AfaI	GTAC	4 cut(s)	275, 418, 496, 607
AfeI	AGCGCT	1 cut(s)	522
AfiI	CCNNNNNNNGG	3 cut(s)	198, 367, 560
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	179, 218
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	252, 652, 789
AluI	AGCT	3 cut(s)	252, 652, 789
Alw26I	GTCTC	1 cut(s)	708
AlwI	GGATC	1 cut(s)	460
Aor13HI	TCCGGA	1 cut(s)	367
Aor51HI	AGCGCT	1 cut(s)	522
AoxI	GGCC	2 cut(s)	243, 396
ApeKI	GCWGC	5 cut(s)	377, 380, 512, 515, 518
ApoI	RAATTY	2 cut(s)	667, 757
Asp718I	GGTACC	2 cut(s)	273, 416
AspLEI	GCGC	1 cut(s)	523
AsuC2I	CCSGG	2 cut(s)	259, 753
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	205
BaeI	ACNNNNGTAYC	2 cut(s)	408, 441
BanI	GGYRCC	3 cut(s)	202, 273, 416
BauI	CACGAG	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	5 cut(s)	364, 392, 524, 527, 530
BccI	CCATC	2 cut(s)	367, 538
BciT130I	CCWGG	1 cut(s)	271
BciVI	GTATCC	2 cut(s)	468, 623
BcnI	CCSGG	2 cut(s)	259, 753
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	3 cut(s)	83, 198, 441
BfmI	CTRYAG	3 cut(s)	378, 510, 624
BfoI	RGCGCY	1 cut(s)	524
BfuI	GTATCC	2 cut(s)	468, 623
BisI	GCNGC	9 cut(s)	280, 378, 381, 384, 399, 501, 513, 516, 519
BlsI	GCNGC	9 cut(s)	281, 379, 382, 385, 400, 502, 514, 517, 520
Bme1390I	CCNGG	3 cut(s)	259, 271, 753
BmgBI	CACGTC	1 cut(s)	165
BmiI	GGNNCC	3 cut(s)	204, 275, 418
BmrFI	CCNGG	3 cut(s)	259, 271, 753
BmsI	GCATC	3 cut(s)	52, 291, 558
BpiI	GAAGAC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	259, 753
BsaJI	CCNNGG	4 cut(s)	240, 269, 277, 326
BsaWI	WCCGGW	1 cut(s)	367
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 367, 560
Bse1I	ACTGG	1 cut(s)	461
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	240, 269, 277, 326
BseLI	CCNNNNNNNGG	3 cut(s)	198, 367, 560
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	364, 392, 524, 527, 530
Bsh1236I	CGCG	2 cut(s)	279, 386
BshFI	GGCC	2 cut(s)	245, 398
BshNI	GGYRCC	3 cut(s)	202, 273, 416
BsiSI	CCGG	3 cut(s)	258, 368, 752
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	3 cut(s)	198, 367, 560
BsmAI	GTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	2 cut(s)	245, 398
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	452
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	8 cut(s)	119, 195, 277, 279, 384, 399, 501, 707
BspANI	GGCC	2 cut(s)	245, 398
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	2 cut(s)	279, 386
BspLI	GGNNCC	3 cut(s)	204, 275, 418
BspMAI	CTGCAG	2 cut(s)	382, 514
BspPI	GGATC	1 cut(s)	460
BspQI	GCTCTTC	2 cut(s)	259, 642
BspT107I	GGYRCC	3 cut(s)	202, 273, 416
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	4 cut(s)	240, 269, 277, 326
BssMI	GATC	1 cut(s)	452
BssSI	CACGAG	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	471, 732
Bst6I	CTCTTC	4 cut(s)	147, 259, 642, 763
BstDSI	CCRYGG	3 cut(s)	240, 277, 326
BstENI	CCTNNNNNAGG	1 cut(s)	196
BstFNI	CGCG	2 cut(s)	279, 386
BstH2I	RGCGCY	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	1 cut(s)	455
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	6 cut(s)	242, 346, 383, 509, 518, 670
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	257, 269, 751
BstSFI	CTRYAG	3 cut(s)	378, 510, 624
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	2 cut(s)	279, 386
BstV1I	GCAGC	5 cut(s)	364, 392, 524, 527, 530
BstV2I	GAAGAC	1 cut(s)	338
BsuI	GTATCC	2 cut(s)	468, 623
BsuRI	GGCC	2 cut(s)	245, 398
BtgI	CCRYGG	3 cut(s)	240, 277, 326
BtrI	CACGTC	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	468
CfoI	GCGC	1 cut(s)	523
Cfr42I	CCGCGG	1 cut(s)	280
Csp6I	GTAC	4 cut(s)	274, 417, 495, 606
CviAII	CATG	2 cut(s)	241, 682
CviQI	GTAC	4 cut(s)	274, 417, 495, 606
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	4 cut(s)	147, 259, 642, 763
EarI	CTCTTC	4 cut(s)	147, 259, 642, 763
EciI	GGCGGA	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	522
EcoNI	CCTNNNNNAGG	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	244, 685
FaiI	YATR	6 cut(s)	242, 390, 593, 638, 683, 741
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	2 cut(s)	240, 681
Fnu4HI	GCNGC	9 cut(s)	280, 378, 381, 384, 399, 501, 513, 516, 519
Fsp4HI	GCNGC	9 cut(s)	280, 378, 381, 384, 399, 501, 513, 516, 519
FspBI	CTAG	3 cut(s)	83, 198, 441
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	9 cut(s)	280, 378, 381, 384, 399, 501, 513, 516, 519
HaeII	RGCGCY	1 cut(s)	524
HaeIII	GGCC	2 cut(s)	245, 398
HapII	CCGG	3 cut(s)	258, 368, 752
HhaI	GCGC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	244, 685
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HinfI	GANTC	2 cut(s)	550, 722
HpaII	CCGG	3 cut(s)	258, 368, 752
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	474, 679
Hpy188I	TCNGA	4 cut(s)	313, 320, 736, 763
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	2 cut(s)	474, 679
HpyAV	CCTTC	1 cut(s)	767
HpyCH4III	ACNGT	2 cut(s)	471, 732
HpyCH4IV	ACGT	2 cut(s)	50, 164
HpyCH4V	TGCA	4 cut(s)	43, 380, 512, 571
HpyF10VI	GCNNNNNNNGC	6 cut(s)	242, 346, 383, 509, 518, 670
HpySE526I	ACGT	2 cut(s)	50, 164
Hsp92II	CATG	2 cut(s)	244, 685
HspAI	GCGC	1 cut(s)	521
Kpn2I	TCCGGA	1 cut(s)	367
KpnI	GGTACC	2 cut(s)	277, 420
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	452
LguI	GCTCTTC	2 cut(s)	259, 642
LmnI	GCTCC	1 cut(s)	786
Lsp1109I	GCAGC	5 cut(s)	364, 392, 524, 527, 530
LweI	GCATC	3 cut(s)	52, 291, 558
MaeI	CTAG	3 cut(s)	83, 198, 441
MaeII	ACGT	2 cut(s)	50, 164
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	7 cut(s)	134, 137, 246, 343, 612, 659, 780
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	3 cut(s)	447, 667, 757
MlyI	GAGTC	2 cut(s)	559, 716
MroI	TCCGGA	1 cut(s)	367
MseI	TTAA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	3 cut(s)	258, 368, 752
MspR9I	CCNGG	3 cut(s)	259, 271, 753
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	2 cut(s)	279, 386
MwoI	GCNNNNNNNGC	6 cut(s)	242, 346, 383, 509, 518, 670
NciI	CCSGG	2 cut(s)	259, 753
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	452
NlaIII	CATG	2 cut(s)	244, 685
NlaIV	GGNNCC	3 cut(s)	204, 275, 418
NmeAIII	GCCGAG	1 cut(s)	735
NmuCI	GTSAC	1 cut(s)	536
PciSI	GCTCTTC	2 cut(s)	259, 642
PctI	GAATGC	1 cut(s)	699
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	9 cut(s)	281, 379, 382, 385, 400, 502, 514, 517, 520
PleI	GAGTC	2 cut(s)	558, 716
PpsI	GAGTC	2 cut(s)	558, 716
Psp1406I	AACGTT	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	3 cut(s)	204, 275, 418
PstI	CTGCAG	2 cut(s)	382, 514
RsaI	GTAC	4 cut(s)	275, 418, 496, 607
RsaNI	GTAC	4 cut(s)	274, 417, 495, 606
SacII	CCGCGG	1 cut(s)	280
SapI	GCTCTTC	2 cut(s)	259, 642
SaqAI	TTAA	1 cut(s)	446
SatI	GCNGC	9 cut(s)	280, 378, 381, 384, 399, 501, 513, 516, 519
Sau3AI	GATC	1 cut(s)	452
SchI	GAGTC	2 cut(s)	559, 716
ScrFI	CCNGG	3 cut(s)	259, 271, 753
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	3 cut(s)	52, 291, 558
SfcI	CTRYAG	3 cut(s)	378, 510, 624
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	447, 667, 757
SsiI	CCGC	8 cut(s)	119, 195, 277, 279, 384, 399, 501, 707
SspMI	CTAG	3 cut(s)	83, 198, 441
StyD4I	CCNGG	3 cut(s)	257, 269, 751
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	471, 732
TaiI	ACGT	2 cut(s)	53, 167
TasI	AATT	3 cut(s)	447, 667, 757
TatI	WGTACW	1 cut(s)	605
TauI	GCSGC	4 cut(s)	282, 386, 401, 503
Tru1I	TTAA	1 cut(s)	446
Tru9I	TTAA	1 cut(s)	446
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	5 cut(s)	377, 380, 512, 515, 518
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	731
TspGWI	ACGGA	2 cut(s)	343, 780
TspRI	CASTG	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	196
XapI	RAATTY	2 cut(s)	667, 757
XspI	CTAG	3 cut(s)	83, 198, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.