Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

10102898 .. 10103434

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCATCAAGCTCTTGCGGGAAGCACTCTAGGTACCATGGAATCCGGTGCCGAGGCGGAAAATGGGTGTCCGAAATCCGTGAGCCACGTAAGACTAGACGGATATGGCTCGGGACTTACCCAACCCCAGAGATGGCTGCGGCCGCCTATGACGTCGCCGCTCTCGCTCTCAAGCGGGGCGATGCTGTTCTCAACTTTCCGAGCTCCATTGCCTCTTATCCAGTGCCAGCATCCACGTCACCGGAGGACATTCGCAGTGCCGCCTCCGCCGCCGCTGCACTACAGTGGAATGAGGAGGCCAATAACAGTCTGAAGCACAGAGAGAGGCAGAAGAAGCAAGAGGACGACATGAGGACGATGATGAATAGTTCCAGTTTGGCGTCATCTGTGGGAATAGACGAAGAAGAGCTTTTTGGGATGCCGAATTTGTTGGTCGAAATGGCAGAAGGAATGCTGTTGTCTCCGCCGAGACCGCCTGATTATCCTGACTCCTCGGGCAATTCAGACGGAGGAGAAAGTGGTCTGTGGAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

179

Amino Acids

19.41

Weight (kDa)

5.67

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	156
Acc65I	GGTACC	1 cut(s)	33
AccB1I	GGYRCC	2 cut(s)	33, 48
AccBSI	CCGCTC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	2 cut(s)	153, 380
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AleI	CACNNNNGTG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	12, 204, 409, 531
AluI	AGCT	4 cut(s)	12, 204, 409, 531
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	463, 465
Ama87I	CYCGRG	2 cut(s)	110, 493
AoxI	GGCC	2 cut(s)	141, 297
ApeKI	GCWGC	2 cut(s)	137, 275
ApoI	RAATTY	1 cut(s)	424
Asp718I	GGTACC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	231
AvaI	CYCGRG	2 cut(s)	110, 493
BanI	GGYRCC	2 cut(s)	33, 48
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	124, 262
BccI	CCATC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	463, 465
BfaI	CTAG	2 cut(s)	30, 96
BfmI	CTRYAG	1 cut(s)	281
BisI	GCNGC	8 cut(s)	138, 141, 144, 159, 261, 270, 273, 276
BlsI	GCNGC	8 cut(s)	139, 142, 145, 160, 262, 271, 274, 277
BmeT110I	CYCGRG	2 cut(s)	110, 493
BmgBI	CACGTC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	35, 50
BmsI	GCATC	4 cut(s)	14, 172, 239, 408
BpuEI	CTTGAG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	89
BsaHI	GRCGYC	2 cut(s)	153, 380
BsaI	GGTCTC	1 cut(s)	463
BsaJI	CCNNGG	3 cut(s)	37, 52, 492
BsaWI	WCCGGW	2 cut(s)	45, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	221, 372
Bse3DI	GCAATG	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	37, 52, 492
BseGI	GGATG	2 cut(s)	230, 423
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	221, 372
BseRI	GAGGAG	3 cut(s)	308, 481, 525
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	124, 262
BsgI	GTGCAG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	2 cut(s)	143, 299
BshNI	GGYRCC	2 cut(s)	33, 48
BsiEI	CGRYCG	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	206
BsiHKCI	CYCGRG	2 cut(s)	110, 493
BsiSI	CCGG	2 cut(s)	46, 242
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	463, 465
BsmFI	GGGAC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	143, 299
Bso31I	GGTCTC	1 cut(s)	463
BsoBI	CYCGRG	2 cut(s)	110, 493
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp19I	CCATGG	1 cut(s)	37
BspANI	GGCC	2 cut(s)	143, 299
BspLI	GGNNCC	2 cut(s)	35, 50
BspQI	GCTCTTC	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	33, 48
BspTNI	GGTCTC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	221, 372
BssECI	CCNNGG	3 cut(s)	37, 52, 492
BssNI	GRCGYC	2 cut(s)	153, 380
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	285, 308
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	2 cut(s)	153, 380
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	228
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	230, 423
BstMAI	GTCTC	2 cut(s)	463, 465
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 164, 266, 269, 275, 334, 472
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	2 cut(s)	124, 262
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	143, 299
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	230, 423
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	3 cut(s)	228, 262, 290
Cac8I	GCNNGC	1 cut(s)	228
CciNI	GCGGCCGC	1 cut(s)	141
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	38, 349
CviJI	RGCY	9 cut(s)	12, 85, 109, 137, 143, 204, 299, 409, 531
CviKI_1	RGCY	9 cut(s)	12, 85, 109, 137, 143, 204, 299, 409, 531
CviQI	GTAC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	141
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	3 cut(s)	72, 256, 453
Ecl136II	GAGCTC	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	463
Eco52I	CGGCCG	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	332
Eco88I	CYCGRG	2 cut(s)	110, 493
EcoICRI	GAGCTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	41, 352
FaiI	YATR	4 cut(s)	39, 106, 150, 350
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	37, 348
FauI	CCCGC	2 cut(s)	11, 168
Fnu4HI	GCNGC	8 cut(s)	138, 141, 144, 159, 261, 270, 273, 276
FokI	GGATG	2 cut(s)	217, 430
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	8 cut(s)	138, 141, 144, 159, 261, 270, 273, 276
FspBI	CTAG	2 cut(s)	30, 96
GluI	GCNGC	8 cut(s)	138, 141, 144, 159, 261, 270, 273, 276
HaeIII	GGCC	2 cut(s)	143, 299
HapII	CCGG	2 cut(s)	46, 242
HgaI	GACGC	1 cut(s)	369
Hin1I	GRCGYC	2 cut(s)	153, 380
Hin1II	CATG	2 cut(s)	41, 352
HinfI	GANTC	2 cut(s)	42, 488
HpaII	CCGG	2 cut(s)	46, 242
HphI	GGTGA	1 cut(s)	231
Hpy188I	TCNGA	4 cut(s)	73, 201, 312, 505
Hpy188III	TCNNGA	2 cut(s)	112, 485
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	285, 308
HpyCH4IV	ACGT	3 cut(s)	88, 153, 236
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 164, 266, 269, 275, 334, 472
HpySE526I	ACGT	3 cut(s)	88, 153, 236
Hsp92I	GRCGYC	2 cut(s)	153, 380
Hsp92II	CATG	2 cut(s)	41, 352
KpnI	GGTACC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	2 cut(s)	209, 528
LpnPI	CCDG	8 cut(s)	59, 141, 234, 240, 255, 385, 489, 498
Lsp1109I	GCAGC	2 cut(s)	124, 262
LweI	GCATC	4 cut(s)	14, 172, 239, 408
MaeI	CTAG	2 cut(s)	30, 96
MaeII	ACGT	3 cut(s)	88, 153, 236
MaeIII	GTNAC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	343, 413, 416
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	2 cut(s)	424, 499
MlyI	GAGTC	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	46, 242
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	7 cut(s)	143, 164, 266, 269, 275, 334, 472
NcoI	CCATGG	1 cut(s)	37
NlaIII	CATG	2 cut(s)	41, 352
NlaIV	GGNNCC	2 cut(s)	35, 50
NmeAIII	GCCGAG	2 cut(s)	77, 492
NmuCI	GTSAC	1 cut(s)	237
NotI	GCGGCCGC	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	1 cut(s)	42
PkrI	GCNGC	8 cut(s)	139, 142, 145, 160, 262, 271, 274, 277
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	35, 50
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
RseI	CAYNNNNRTG	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	399
SatI	GCNGC	8 cut(s)	138, 141, 144, 159, 261, 270, 273, 276
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	206
SetI	ASST	8 cut(s)	14, 35, 91, 156, 206, 239, 411, 533
SfaNI	GCATC	4 cut(s)	14, 172, 239, 408
SfcI	CTRYAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	2 cut(s)	424, 499
SspMI	CTAG	2 cut(s)	30, 96
SstI	GAGCTC	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	285, 308
TaiI	ACGT	3 cut(s)	91, 156, 239
TaqI	TCGA	1 cut(s)	435
TasI	AATT	2 cut(s)	424, 499
TauI	GCSGC	6 cut(s)	143, 146, 161, 263, 272, 275
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	3 cut(s)	228, 262, 290
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	2 cut(s)	137, 275
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	3 cut(s)	68, 115, 522
TspRI	CASTG	3 cut(s)	228, 262, 290
XapI	RAATTY	1 cut(s)	424
XspI	CTAG	2 cut(s)	30, 96
ZraI	GACGTC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.