Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Reverse (-)

10118570 .. 10119124

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCTCAACCTCTTCCGGGAAGCACCCCACGTACCGCGGCATCCGGTGCCGCGGCGGAAAATGGGTTTCTGAAATCCGGGAGCCACGCAAGACCAAGAGAATATGGCTTGGCACTTTCCCAACTGCGGAGATGGCTGCGGCCGCCTATGATGTGGCCGCACTCGCTCTGAAAGGTGCCGATGTTGTTCTCAACTTTCCCGGTTTCATTGGATCATATCCAGTGCCAGCATCCACTTCGGCACAAGATATTCGTAGTGCCGCAGCTGCTGCAGCGGCGACACTACGAAAGAATGATGACTCCAGAGAGAGCCCGGGACAGAGGCAGACGGATGATAAGGACGATATGACGGTGAGTAATAGTATAAGTTTGGCGTCGTCTTCTGTGGGAGATTTCATGGACGAGGAAGAGCTTTTTGGGATGCCTAATTTACTGATGGACATGGCAGAGGGAATGCTGGTGTCTCCACCGCGAATGAACGACTCGCCGCCTTCGGATTATGACGACTCACCGGGAAACTCAGACGGTGGAGAAAGTCTCCTTTGGAGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

185

Amino Acids

19.71

Weight (kDa)

4.64

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	48, 176
AccII	CGCG	3 cut(s)	39, 54, 472
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	2 cut(s)	141, 156
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	18, 127
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	266, 412, 549
AluI	AGCT	3 cut(s)	266, 412, 549
Alw26I	GTCTC	2 cut(s)	468, 542
AlwI	GGATC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	3 cut(s)	3, 141, 156
ApeKI	GCWGC	5 cut(s)	137, 263, 266, 269, 272
AsuC2I	CCSGG	6 cut(s)	19, 80, 201, 314, 315, 513
AsuHPI	GGTGA	2 cut(s)	364, 501
AvaI	CYCGRG	1 cut(s)	313
BanI	GGYRCC	2 cut(s)	48, 176
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	5 cut(s)	124, 253, 256, 275, 284
BccI	CCATC	2 cut(s)	127, 430
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BcnI	CCSGG	6 cut(s)	19, 80, 201, 314, 315, 513
BcoDI	GTCTC	2 cut(s)	468, 542
BfmI	CTRYAG	1 cut(s)	270
Bme1390I	CCNGG	6 cut(s)	19, 80, 201, 314, 315, 513
BmeT110I	CYCGRG	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	50, 84, 178
BmrFI	CCNGG	6 cut(s)	19, 80, 201, 314, 315, 513
BmsI	GCATC	3 cut(s)	51, 239, 411
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpmI	CTGGAG	1 cut(s)	286
BpuMI	CCSGG	6 cut(s)	19, 80, 201, 314, 315, 513
BsaAI	YACGTR	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	37, 52, 313
BsaWI	WCCGGW	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 127
Bse1I	ACTGG	1 cut(s)	221
BseDI	CCNNGG	3 cut(s)	37, 52, 313
BseGI	GGATG	4 cut(s)	42, 230, 337, 426
BseLI	CCNNNNNNNGG	2 cut(s)	18, 127
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	221
BseX3I	CGGCCG	1 cut(s)	141
BseXI	GCAGC	5 cut(s)	124, 253, 256, 275, 284
Bsh1236I	CGCG	3 cut(s)	39, 54, 472
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	5, 143, 158
BshNI	GGYRCC	2 cut(s)	48, 176
BsiEI	CGRYCG	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	6 cut(s)	18, 46, 79, 201, 314, 512
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	18, 127
BsmAI	GTCTC	2 cut(s)	468, 542
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	5, 143, 158
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	212
BspANI	GGCC	3 cut(s)	5, 143, 158
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	3 cut(s)	39, 54, 472
BspLI	GGNNCC	3 cut(s)	50, 84, 178
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	220
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	2 cut(s)	48, 176
BsrI	ACTGG	1 cut(s)	221
BssECI	CCNNGG	3 cut(s)	37, 52, 313
BssMI	GATC	1 cut(s)	212
BssNI	GRCGYC	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	352, 527
Bst6I	CTCTTC	2 cut(s)	19, 402
BstACI	GRCGYC	1 cut(s)	374
BstAPI	GCANNNNNTGC	2 cut(s)	48, 269
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	2 cut(s)	37, 52
BstF5I	GGATG	4 cut(s)	42, 230, 337, 426
BstFNI	CGCG	3 cut(s)	39, 54, 472
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	2 cut(s)	468, 542
BstMBI	GATC	1 cut(s)	212
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 134, 143, 164, 266, 269, 272, 275
BstSCI	CCNGG	6 cut(s)	17, 78, 199, 312, 313, 511
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	3 cut(s)	39, 54, 472
BstV1I	GCAGC	5 cut(s)	124, 253, 256, 275, 284
BstV2I	GAAGAC	1 cut(s)	372
BstZI	CGGCCG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	5, 143, 158
BtgI	CCRYGG	2 cut(s)	37, 52
BtsCI	GGATG	4 cut(s)	42, 230, 337, 426
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	269
CciNI	GCGGCCGC	1 cut(s)	141
Cfr42I	CCGCGG	2 cut(s)	40, 55
Cfr9I	CCCGGG	1 cut(s)	313
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	397, 442
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
EaeI	YGGCCR	2 cut(s)	141, 156
EagI	CGGCCG	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	19, 402
EarI	CTCTTC	2 cut(s)	19, 402
EciI	GGCGGA	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	314
Eco52I	CGGCCG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	2 cut(s)	400, 445
FaiI	YATR	8 cut(s)	106, 150, 217, 347, 365, 398, 443, 501
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	2 cut(s)	396, 441
FokI	GGATG	4 cut(s)	29, 217, 344, 433
FriOI	GRGCYC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	5, 143, 158
HapII	CCGG	6 cut(s)	18, 46, 79, 201, 314, 512
HgaI	GACGC	1 cut(s)	363
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	400, 445
HinfI	GANTC	3 cut(s)	299, 482, 506
HpaII	CCGG	6 cut(s)	18, 46, 79, 201, 314, 512
HphI	GGTGA	2 cut(s)	364, 501
Hpy188I	TCNGA	4 cut(s)	73, 171, 496, 523
Hpy188III	TCNNGA	1 cut(s)	303
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	2 cut(s)	352, 527
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 134, 143, 164, 266, 269, 272, 275
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	400, 445
KspI	CCGCGG	2 cut(s)	40, 55
Kzo9I	GATC	1 cut(s)	212
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	82, 546
Lsp1109I	GCAGC	5 cut(s)	124, 253, 256, 275, 284
LweI	GCATC	3 cut(s)	51, 239, 411
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	3 cut(s)	6, 372, 419
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	3 cut(s)	293, 476, 500
MnlI	CCTC	5 cut(s)	16, 22, 315, 397, 442
MseI	TTAA	1 cut(s)	553
MspA1I	CMGCKG	4 cut(s)	39, 54, 266, 275
MspI	CCGG	6 cut(s)	18, 46, 79, 201, 314, 512
MspR9I	CCNGG	6 cut(s)	19, 80, 201, 314, 315, 513
Mva1269I	GAATGC	1 cut(s)	459
MvnI	CGCG	3 cut(s)	39, 54, 472
MwoI	GCNNNNNNNGC	8 cut(s)	48, 134, 143, 164, 266, 269, 272, 275
NciI	CCSGG	6 cut(s)	19, 80, 201, 314, 315, 513
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	400, 445
NlaIV	GGNNCC	3 cut(s)	50, 84, 178
NotI	GCGGCCGC	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	402
PctI	GAATGC	1 cut(s)	459
PfoI	TCCNGGA	2 cut(s)	17, 78
PleI	GAGTC	3 cut(s)	293, 476, 500
PpsI	GAGTC	3 cut(s)	293, 476, 500
Ppu21I	YACGTR	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	50, 84, 178
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacII	CCGCGG	2 cut(s)	40, 55
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	553
Sau3AI	GATC	1 cut(s)	212
SchI	GAGTC	3 cut(s)	293, 476, 500
ScrFI	CCNGG	6 cut(s)	19, 80, 201, 314, 315, 513
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	6 cut(s)	14, 35, 178, 268, 414, 551
SfaNI	GCATC	3 cut(s)	51, 239, 411
SfcI	CTRYAG	1 cut(s)	270
Sfr303I	CCGCGG	2 cut(s)	40, 55
SgrBI	CCGCGG	2 cut(s)	40, 55
SmaI	CCCGGG	1 cut(s)	315
Sse9I	AATT	1 cut(s)	427
StyD4I	CCNGG	6 cut(s)	17, 78, 199, 312, 313, 511
TaaI	ACNGT	2 cut(s)	352, 527
TaiI	ACGT	1 cut(s)	35
TasI	AATT	1 cut(s)	427
TauI	GCSGC	9 cut(s)	42, 54, 57, 143, 146, 161, 263, 278, 490
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	5 cut(s)	137, 263, 266, 269, 272
TspDTI	ATGAA	3 cut(s)	196, 385, 491
TspGWI	ACGGA	1 cut(s)	344
TspMI	CCCGGG	1 cut(s)	313
TspRI	CASTG	1 cut(s)	228
XmaI	CCCGGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.