Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013662

Physical Location & Seq

Genomic Coordinates Forward (+)

6054286 .. 6054913

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTGACCCAAATCCAAATACAAACACTTCCAATATCGTGCATCAAACAATAGACCAATCCACACCCACCGATCCACATCTAGTAGTGTCCCCCCTTGACTTTCACCCTCCTCCACCGCACCAAGTCCTCCCACATTCTCTTCTTCCTCTCCAGCACCAGACGTGTGAAACTATTGAAATACCCTCTCCCTCCGCTAGGGCACCACTACACGTTCAAACACTACCAAAACCTGCCACCATGGCCTCAAGCTCTTCCGGGAAGCACCCCAGGTACCGCGGCATCCGGTGTAGGGGAGGAAAATGGGTATCTGAAATCCGAGAGCCACGGAAGACCAAGCGTATTTGGCTTGGCACTTTCCCAACTCCAGAGATGGCTGCAGCCGCCTATGATGTGGCCGCACTTGCACTCAAAGTACAAGTTTGGCCTCGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043207 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

146

Amino Acids

16.03

Weight (kDa)

9.62

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	90 - 137	1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013662)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01460
malus_domestica	MD04G1067700.v1.1
prunus_persica	Prupe.5G090300_v2.0.a1 Prupe.5G090400_v2.0.a1 Prupe.5G090600_v2.0.a1 Prupe.5G090700_v2.0.a1 Prupe.5G090800_v2.0.a1
pyrus_communis	pycom04g06130
rosa_chinensis	RchiOBHm_Chr7g0199231
rosa_laevigata	RLG00000003804
rosa_multiflora	Rmu_ssc0000043.1_g000001
rosa_roxburghii	Rroxscaffold_3G00256930
rosa_rugosa	Rorug07G0053500
rosa_samantha	Rh7AG177400 Rh7BG181000 Rh7CG186600 Rh7DG180500
rosa_wichuraiana	Rw7G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
Acc65I	GGTACC	1 cut(s)	273
AccB1I	GGYRCC	2 cut(s)	202, 273
AccII	CGCG	1 cut(s)	279
AciI	CCGC	6 cut(s)	119, 195, 277, 279, 384, 399
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	396
AfaI	GTAC	2 cut(s)	275, 417
AfiI	CCNNNNNNNGG	2 cut(s)	198, 292
AflIII	ACRYGT	2 cut(s)	164, 211
AgsI	TTSAA	2 cut(s)	179, 218
AjiI	CACGTC	1 cut(s)	165
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	3 cut(s)	243, 396, 425
ApeKI	GCWGC	2 cut(s)	377, 380
Asp718I	GGTACC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	2 cut(s)	202, 273
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	364, 392
BccI	CCATC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	259
BfaI	CTAG	2 cut(s)	83, 198
BfmI	CTRYAG	2 cut(s)	378, 434
BfuAI	ACCTGC	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	280, 378, 381, 384, 399
BlsI	GCNGC	5 cut(s)	281, 379, 382, 385, 400
Bme1390I	CCNGG	2 cut(s)	259, 271
BmgBI	CACGTC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	204, 275
BmrFI	CCNGG	2 cut(s)	259, 271
BmsI	GCATC	2 cut(s)	52, 291
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	2 cut(s)	137, 351
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	4 cut(s)	240, 269, 277, 326
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 292
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	240, 269, 277, 326
BseGI	GGATG	1 cut(s)	282
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	198, 292
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	364, 392
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	245, 398, 427
BshNI	GGYRCC	2 cut(s)	202, 273
BsiSI	CCGG	2 cut(s)	258, 286
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	198, 292
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	245, 398, 427
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	6 cut(s)	119, 195, 277, 279, 384, 399
BspANI	GGCC	3 cut(s)	245, 398, 427
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	204, 275
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	259
BspT107I	GGYRCC	2 cut(s)	202, 273
BssECI	CCNNGG	4 cut(s)	240, 269, 277, 326
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	147, 259
BstDSI	CCRYGG	3 cut(s)	240, 277, 326
BstENI	CCTNNNNNAGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 346, 383, 404
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	257, 269
BstSFI	CTRYAG	2 cut(s)	378, 434
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	364, 392
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	245, 398, 427
BtgI	CCRYGG	3 cut(s)	240, 277, 326
BtrI	CACGTC	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	241
Cfr42I	CCGCGG	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	274, 416
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	5, 245, 252, 325, 349, 377, 383, 398, 427
CviKI_1	RGCY	9 cut(s)	5, 245, 252, 325, 349, 377, 383, 398, 427
CviQI	GTAC	2 cut(s)	274, 416
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	147, 259
EarI	CTCTTC	2 cut(s)	147, 259
Eco130I	CCWWGG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	244
FaiI	YATR	2 cut(s)	242, 390
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	280, 378, 381, 384, 399
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	5 cut(s)	280, 378, 381, 384, 399
FspBI	CTAG	2 cut(s)	83, 198
GluI	GCNGC	5 cut(s)	280, 378, 381, 384, 399
GsuI	CTGGAG	2 cut(s)	137, 351
HaeIII	GGCC	3 cut(s)	245, 398, 427
HapII	CCGG	2 cut(s)	258, 286
Hin1II	CATG	1 cut(s)	244
HpaII	CCGG	2 cut(s)	258, 286
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	313, 320
Hpy188III	TCNNGA	1 cut(s)	368
HpyCH4IV	ACGT	2 cut(s)	164, 213
HpyCH4V	TGCA	3 cut(s)	43, 380, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 346, 383, 404
HpySE526I	ACGT	2 cut(s)	164, 213
Hsp92II	CATG	1 cut(s)	244
KpnI	GGTACC	1 cut(s)	277
KspI	CCGCGG	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	73
LguI	GCTCTTC	1 cut(s)	259
LpnPI	CCDG	8 cut(s)	167, 173, 246, 256, 271, 283, 299, 381
Lsp1109I	GCAGC	2 cut(s)	364, 392
LweI	GCATC	2 cut(s)	52, 291
MaeI	CTAG	2 cut(s)	83, 198
MaeII	ACGT	2 cut(s)	164, 213
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	4 cut(s)	134, 137, 246, 343
MhlI	GDGCHC	1 cut(s)	205
MnlI	CCTC	9 cut(s)	120, 123, 140, 159, 196, 202, 256, 290, 438
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	2 cut(s)	258, 286
MspR9I	CCNGG	2 cut(s)	259, 271
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	242, 346, 383, 404
NciI	CCSGG	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	2 cut(s)	204, 275
PciSI	GCTCTTC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	5 cut(s)	281, 379, 382, 385, 400
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	204, 275
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	275, 417
RsaNI	GTAC	2 cut(s)	274, 416
SacII	CCGCGG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	259
SatI	GCNGC	5 cut(s)	280, 378, 381, 384, 399
Sau3AI	GATC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	259, 271
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	5 cut(s)	167, 216, 235, 254, 275
SfaNI	GCATC	2 cut(s)	52, 291
SfcI	CTRYAG	2 cut(s)	378, 434
Sfr303I	CCGCGG	1 cut(s)	280
SgrBI	CCGCGG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SsiI	CCGC	6 cut(s)	119, 195, 277, 279, 384, 399
SspMI	CTAG	2 cut(s)	83, 198
StyD4I	CCNGG	2 cut(s)	257, 269
StyI	CCWWGG	1 cut(s)	240
TaiI	ACGT	2 cut(s)	167, 216
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	3 cut(s)	282, 386, 401
TseI	GCWGC	2 cut(s)	377, 380
TspGWI	ACGGA	1 cut(s)	343
XagI	CCTNNNNNAGG	1 cut(s)	196
XspI	CTAG	2 cut(s)	83, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.