Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Forward (+)

3181209 .. 3184148

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05410.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCGATGAGGCCTGAAATCGTGTTGTTTGGGGACTCAATAACAGAGCAGTCCTTCAGATTAGGAGGATGGGGTTCTGCTCTTGCTGACACCTACTCTCGCAAGGCTGATGTCAAAGTTCGTGGCTATGGTGGGTACAACACCAGATGGGCGCTGTTCTTGTTGCAACAGATCTTTCCTCTGGATTCTGGAAAACCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGACGCAGCTATTTTGGGGAGAACAAGCGACCGGCAACATGTTCCTCTCAAAGAGTACAAGGAGAATCTCAGAAAAATTGTTCTTCATTTGAAGGAATGCAGTCCCACTATTCTGATTGTGCTCATCACCCCACCACCTGTGGATGAGGAAGGGCGTAACGAATTTGCACGATTGTTATATGGCGAGGATGCTAGGAAACTGCCAGAAAGGACAAATGAAGTGGCAGGAGATTATGCAAAGCAGTGCCTTGAGCTAGCTGAGGAATTGGGTGTCCGCTTCATCAATCTTTGGTCCAAGTTGCAGGAAACAGAGGGTTGGCAGAAGAAATTTCTAAGTGACGGATTGCACCTAACACCAGAAGGCAATGCTGCAGTCCACCAAGAAGTTGTAAGAGTTTTCAAAGAAGCATGGTTTTCTGCTGACGAAATGCCTTATGATTTTCCTCACCACTCGGTCATTGATGGGAAGAACCCTGAGAAAGCTTTCGAGCAAAGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

245

Amino Acids

27.62

Weight (kDa)

5.75

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	6 - 148	4.3e-23	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	8 - 144	1.2e-16	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	392, 557
AcuI	CTGAAG	1 cut(s)	40
AfaI	GTAC	2 cut(s)	137, 287
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	322, 631
AluBI	AGCT	4 cut(s)	239, 484, 488, 713
AluI	AGCT	4 cut(s)	239, 484, 488, 713
Alw21I	GWGCWC	1 cut(s)	354
AoxI	GGCC	2 cut(s)	11, 225
ApeKI	GCWGC	4 cut(s)	203, 206, 236, 599
ApoI	RAATTY	2 cut(s)	392, 557
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	225, 522
AsuHPI	GGTGA	2 cut(s)	349, 668
AsuNHI	GCTAGC	1 cut(s)	484
AvaII	GGWCC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	190, 193, 248, 586
BccI	CCATC	3 cut(s)	63, 141, 686
BfaI	CTAG	2 cut(s)	423, 485
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	155
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	4 cut(s)	204, 207, 237, 600
BlsI	GCNGC	4 cut(s)	205, 208, 238, 601
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	2 cut(s)	225, 522
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	2 cut(s)	409, 716
BmtI	GCTAGC	1 cut(s)	488
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	601
BseGI	GGATG	3 cut(s)	74, 379, 424
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	3 cut(s)	313, 480, 696
BseXI	GCAGC	4 cut(s)	190, 193, 248, 586
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	13, 227
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	2 cut(s)	47, 318
BsmFI	GGGAC	2 cut(s)	47, 318
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	13, 227
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	2 cut(s)	13, 227
BspCNI	CTCAG	3 cut(s)	312, 481, 697
BspLI	GGNNCC	1 cut(s)	226
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssMI	GATC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	4 cut(s)	299, 489, 563, 705
BstF5I	GGATG	3 cut(s)	74, 379, 424
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	190, 193, 248, 586
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	13, 227
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	74, 379, 424
BtsI	GCAGTG	1 cut(s)	479
BtsIMutI	CAGTG	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	486
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	225, 522
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	136, 286
CspCI	CAANNNNNGTGG	4 cut(s)	103, 138, 432, 467
CviAII	CATG	2 cut(s)	269, 639
CviJI	RGCY	8 cut(s)	13, 107, 126, 227, 239, 484, 488, 713
CviKI_1	RGCY	8 cut(s)	13, 107, 126, 227, 239, 484, 488, 713
CviQI	GTAC	2 cut(s)	136, 286
DdeI	CTNAG	4 cut(s)	299, 489, 563, 705
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	731
FaeI	CATG	2 cut(s)	272, 642
FaiI	YATR	9 cut(s)	129, 270, 409, 411, 465, 640, 666, 731, 733
FaqI	GGGAC	2 cut(s)	47, 318
FatI	CATG	2 cut(s)	268, 638
Fnu4HI	GCNGC	4 cut(s)	204, 207, 237, 600
FokI	GGATG	3 cut(s)	81, 386, 431
Fsp4HI	GCNGC	4 cut(s)	204, 207, 237, 600
FspBI	CTAG	2 cut(s)	423, 485
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	204, 207, 237, 600
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	13, 227
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	272, 642
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	711
HinfI	GANTC	3 cut(s)	35, 185, 295
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	2 cut(s)	349, 668
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	3 cut(s)	59, 302, 345
Hpy188III	TCNNGA	2 cut(s)	182, 189
Hpy8I	GTNNAC	1 cut(s)	607
HpyAV	CCTTC	4 cut(s)	64, 316, 374, 584
HpyCH4V	TGCA	8 cut(s)	166, 330, 398, 467, 532, 577, 602, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	299, 489, 563, 705
Hsp92II	CATG	2 cut(s)	272, 642
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	171
Lsp1109I	GCAGC	4 cut(s)	190, 193, 248, 586
LweI	GCATC	2 cut(s)	409, 716
MaeI	CTAG	2 cut(s)	423, 485
MaeIII	GTNAC	2 cut(s)	386, 566
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	305, 565, 709
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	5 cut(s)	213, 306, 392, 494, 557
MlyI	GAGTC	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	731
MroXI	GAANNNNTTC	1 cut(s)	713
MspI	CCGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	171
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	2 cut(s)	272, 642
NlaIV	GGNNCC	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	13
PciI	ACATGT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	2 cut(s)	185, 295
PkrI	GCNGC	4 cut(s)	205, 208, 238, 601
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PscI	ACATGT	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	225, 522
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	2 cut(s)	137, 287
RsaNI	GTAC	2 cut(s)	136, 286
SatI	GCNGC	4 cut(s)	204, 207, 237, 600
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	225, 522
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	8 cut(s)	95, 199, 241, 370, 486, 490, 582, 715
SfaNI	GCATC	2 cut(s)	409, 716
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	213, 306, 392, 494, 557
SseBI	AGGCCT	1 cut(s)	13
SsiI	CCGC	1 cut(s)	505
SspMI	CTAG	2 cut(s)	423, 485
StuI	AGGCCT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	717
TaqII	GACCGA	1 cut(s)	673
TasI	AATT	5 cut(s)	213, 306, 392, 494, 557
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	185, 295
TscAI	CASTG	1 cut(s)	479
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	4 cut(s)	203, 206, 236, 599
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	3 cut(s)	305, 462, 499
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	392, 557
XceI	RCATGY	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	713
XspI	CTAG	2 cut(s)	423, 485
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.