Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Reverse (-)

10853072 .. 10855994

Gene Structure 2923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATGTGCAGGATTCCAGAAAACCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGATGCAGCTATTTTGGGGAGAACAAGTGAACGGCAACATGTTCCTCTTGAAGAGTTCAAGGAGAATCTCAGAAAAATTGTTCTTCATTTGAAGGAGTGCAGTCCCACAATTCTGATTGTGCTTATCACTCCACCACCTGTGGATGAGGAAGGGCGTAATGAATATGCACGATCTTTGTATGGTGAGGATGCTAGGAAACTGCCAGAAAGGACAAATGAAGCAGCAGAAGTTTATGCAAAAAAGTGCCTTGAGCTAGCTGAGGAAATGGGTATCCGCTCCGTCAATCTTTGGTCCAAGTTGCAGGAAACAGAGGGTTGGCAGAAGAAATTTCTAAGAGACGGGTTGCACCTAACACCAGAAGGCAATGCTGTAGTCCACCAAGAAGTTGTAAGAGTTTTCAAGGAAGCATGGTTTTCTGCTGACGAAATGCCTTATGATTTTCCTCACCACTCAGTAATTGATGGGAAGAGCCCTGAGAAAGCTTTTGAGCAAAGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

187

Amino Acids

21.36

Weight (kDa)

5.59

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	6 - 148	8.8e-22	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	6 - 143	1.8e-14	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	336
AciI	CCGC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	4 cut(s)	110, 118, 151, 460
AluBI	AGCT	4 cut(s)	68, 313, 317, 542
AluI	AGCT	4 cut(s)	68, 313, 317, 542
Alw26I	GTCTC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	32, 35, 65, 281
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	54, 351
AsuHPI	GGTGA	2 cut(s)	254, 497
AsuNHI	GCTAGC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	533
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	19, 22, 77, 293
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	252, 314
BfmI	CTRYAG	1 cut(s)	429
BfuI	GTATCC	1 cut(s)	341
BisI	GCNGC	4 cut(s)	33, 36, 66, 282
BlsI	GCNGC	4 cut(s)	34, 37, 67, 283
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	54, 351
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	3 cut(s)	52, 238, 545
BmtI	GCTAGC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bse3DI	GCAATG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	208, 253
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	4 cut(s)	142, 309, 525, 525
BseXI	GCAGC	4 cut(s)	19, 22, 77, 293
BsgI	GTGCAG	2 cut(s)	29, 178
BshFI	GGCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	4 cut(s)	141, 310, 524, 526
BspLI	GGNNCC	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	521
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	430
BssMI	GATC	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	105, 521
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	5 cut(s)	128, 318, 392, 511, 534
BstF5I	GGATG	2 cut(s)	208, 253
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	4 cut(s)	19, 22, 77, 293
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	208, 253
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	54, 351
CviAII	CATG	2 cut(s)	98, 468
CviJI	RGCY	6 cut(s)	56, 68, 313, 317, 531, 542
CviKI_1	RGCY	6 cut(s)	56, 68, 313, 317, 531, 542
DdeI	CTNAG	5 cut(s)	128, 318, 392, 511, 534
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	105, 521
EarI	CTCTTC	2 cut(s)	105, 521
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	533
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	2 cut(s)	101, 471
FaiI	YATR	8 cut(s)	99, 225, 240, 294, 469, 495, 560, 562
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	2 cut(s)	97, 467
Fnu4HI	GCNGC	4 cut(s)	33, 36, 66, 282
FokI	GGATG	2 cut(s)	215, 260
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	4 cut(s)	33, 36, 66, 282
FspBI	CTAG	2 cut(s)	252, 314
GluI	GCNGC	4 cut(s)	33, 36, 66, 282
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	101, 471
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	2 cut(s)	14, 124
HphI	GGTGA	2 cut(s)	254, 497
Hpy166II	GTNNAC	2 cut(s)	89, 436
Hpy188I	TCNGA	2 cut(s)	131, 174
Hpy188III	TCNNGA	2 cut(s)	18, 107
Hpy8I	GTNNAC	2 cut(s)	89, 436
HpyAV	CCTTC	3 cut(s)	145, 203, 413
HpyCH4V	TGCA	8 cut(s)	10, 65, 159, 227, 296, 361, 406, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	5 cut(s)	128, 318, 392, 511, 534
Hsp92II	CATG	2 cut(s)	101, 471
Kzo9I	GATC	1 cut(s)	230
LguI	GCTCTTC	1 cut(s)	521
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	7 cut(s)	31, 42, 210, 276, 347, 429, 546
Lsp1109I	GCAGC	4 cut(s)	19, 22, 77, 293
LweI	GCATC	3 cut(s)	52, 238, 545
MaeI	CTAG	2 cut(s)	252, 314
MalI	GATC	1 cut(s)	232
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	1 cut(s)	230
MboII	GAAGA	4 cut(s)	122, 134, 394, 538
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	5 cut(s)	42, 135, 168, 386, 516
MnlI	CCTC	7 cut(s)	36, 114, 199, 238, 313, 364, 513
Mph1103I	ATGCAT	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	230
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	101, 471
NlaIV	GGNNCC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	1 cut(s)	101
PciI	ACATGT	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	14, 124
PkrI	GCNGC	4 cut(s)	34, 37, 67, 283
PscI	ACATGT	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	54, 351
SapI	GCTCTTC	1 cut(s)	521
SatI	GCNGC	4 cut(s)	33, 36, 66, 282
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	2 cut(s)	54, 351
SduI	GDGCHC	1 cut(s)	533
SetI	ASST	7 cut(s)	28, 70, 199, 315, 319, 411, 544
SfaNI	GCATC	3 cut(s)	52, 238, 545
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	5 cut(s)	42, 135, 168, 386, 516
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	2 cut(s)	252, 314
TasI	AATT	5 cut(s)	42, 135, 168, 386, 516
TfiI	GAWTC	2 cut(s)	14, 124
TseI	GCWGC	4 cut(s)	32, 35, 65, 281
TspDTI	ATGAA	4 cut(s)	17, 134, 234, 291
TspGWI	ACGGA	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	101
XspI	CTAG	2 cut(s)	252, 314
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.