Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Reverse (-)

31293966 .. 31296668

Gene Structure 2703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1173000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCCAAATCTACAAAGAACAATGCTATTATTTGGTCGTGTTAAGAAACGAGTTGTCGTTTTACGTACGAAACACGAGTCTCAACCGTCAACCGAACGAGTCAACAGTAAAAAGCGTAGGAGCAGGGAGGAAGAAGAAGCAAGAGCGATGAGGCCTGAGATCGTCTTGTTCGGAGACTCAATCACCGAACAATCCTTCCAATCAGGTGGCTGGGGCGCTGCTCTAGCCGATTCTTACTCCCGCAAGGCCGATGTAAAAGTTCGTGGGTATGGCGGGTACAACACGAGATGGGCTTTGTTCTTGCTGCAGAACCTCTTTCCTCTGGATTCTGATAAACCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGACGCGGCTATTTTAGGCAGAACAAGCGAGCGGCAACATGTTCCTCTTGAAGAGTACAAGGAGAATCTCAGAAAATTTGTTCTTCATCTGAAGGAGTGTTCCCCCACCATTTTGATTGTGCTTATTACTCCACCACCTGTTGACGAGGATGGACGTAATGAATATGCACGATCTTTATATGGTAAGGATGCTAGGGAACTTCCAGAAAGGACGAATGAAGTGACAGGAGTTTATGCAAAGAAGTGCATTGAGCTAGCTGAAGAAATGGGTCTCCGCTCCATCAATCTTTGGTCCACATTGCAGGAAACAGAGGGTTGGCAGAAGAAATTTCTAAGTGACGGGCTACACCTAACACCAGAAGGCAATGCTGTTGTCCACCAAGAAGTCGTCAAAGTTTTCACCGAAGCATGGTTTTCTGCCACGGAAATGCCTCATGATTTCCCTCACCACTCAGAAATTGACGGGAAGAACCCTGAGAAAGCTTTCCAGCAACGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

292

Amino Acids

33.17

Weight (kDa)

7.11

Isoelectric Point (pI)

63.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	54 - 252	1.3e-32	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	56 - 247	1e-23	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	403, 648
AccII	CGCG	1 cut(s)	377
AciI	CCGC	5 cut(s)	241, 273, 377, 403, 646
AcsI	RAATTY	2 cut(s)	446, 698
AcuI	CTGAAG	2 cut(s)	482, 651
AfaI	GTAC	3 cut(s)	67, 278, 428
AfiI	CCNNNNNNNGG	1 cut(s)	780
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	422
AloI	GAACNNNNNNTCC	2 cut(s)	180, 212
AluBI	AGCT	3 cut(s)	625, 629, 854
AluI	AGCT	3 cut(s)	625, 629, 854
Alw26I	GTCTC	3 cut(s)	84, 168, 647
AoxI	GGCC	3 cut(s)	152, 246, 366
ApeKI	GCWGC	4 cut(s)	218, 304, 344, 347
ApoI	RAATTY	2 cut(s)	446, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
Asp700I	GAANNNNTTC	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	366, 663
AsuHPI	GGTGA	3 cut(s)	175, 763, 809
AsuNHI	GCTAGC	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	663
BauI	CACGAG	2 cut(s)	74, 283
BbvI	GCAGC	4 cut(s)	205, 291, 331, 334
BccI	CCATC	3 cut(s)	282, 515, 659
BcoDI	GTCTC	3 cut(s)	84, 168, 647
BfaI	CTAG	3 cut(s)	224, 564, 626
BfmI	CTRYAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	6 cut(s)	219, 305, 345, 348, 378, 404
BlsI	GCNGC	6 cut(s)	220, 306, 346, 349, 379, 405
Bme18I	GGWCC	1 cut(s)	663
BmgT120I	GGNCC	2 cut(s)	366, 663
BmiI	GGNNCC	1 cut(s)	367
BmsI	GCATC	2 cut(s)	550, 857
BmtI	GCTAGC	1 cut(s)	629
BsaAI	YACGTR	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse3DI	GCAATG	2 cut(s)	668, 742
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	2 cut(s)	526, 565
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMI	GCAATG	2 cut(s)	668, 742
BseMII	CTCAG	4 cut(s)	147, 454, 837, 837
BseXI	GCAGC	4 cut(s)	205, 291, 331, 334
BseYI	CCCAGC	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	3 cut(s)	154, 248, 368
BsiWI	CGTACG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmAI	GTCTC	3 cut(s)	84, 168, 647
BsnI	GGCC	3 cut(s)	154, 248, 368
Bso31I	GGTCTC	1 cut(s)	647
Bsp143I	GATC	2 cut(s)	159, 542
BspACI	CCGC	5 cut(s)	241, 273, 377, 403, 646
BspANI	GGCC	3 cut(s)	154, 248, 368
BspCNI	CTCAG	4 cut(s)	148, 453, 836, 838
BspFNI	CGCG	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	309
BspOI	GCTAGC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	647
BsrBI	CCGCTC	2 cut(s)	403, 648
BsrDI	GCAATG	2 cut(s)	668, 742
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	2 cut(s)	159, 542
BssSI	CACGAG	2 cut(s)	74, 283
Bst2BI	CACGAG	2 cut(s)	74, 283
Bst4CI	ACNGT	2 cut(s)	87, 107
Bst6I	CTCTTC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	401, 627
BstDEI	CTNAG	5 cut(s)	156, 440, 704, 823, 846
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	526, 565
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	2 cut(s)	162, 545
BstMAI	GTCTC	3 cut(s)	84, 168, 647
BstMBI	GATC	2 cut(s)	159, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 374, 396
BstNSI	RCATGY	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	305
BstSNI	TACGTA	1 cut(s)	65
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	4 cut(s)	205, 291, 331, 334
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	154, 248, 368
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	526, 565
Cac8I	GCNNGC	2 cut(s)	401, 627
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	366, 663
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	66, 277, 427
CviAII	CATG	3 cut(s)	410, 780, 806
CviQI	GTAC	3 cut(s)	66, 277, 427
DdeI	CTNAG	5 cut(s)	156, 440, 704, 823, 846
DpnI	GATC	2 cut(s)	161, 544
DpnII	GATC	2 cut(s)	159, 542
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco105I	TACGTA	1 cut(s)	65
Eco147I	AGGCCT	1 cut(s)	154
Eco31I	GGTCTC	1 cut(s)	647
Eco47I	GGWCC	1 cut(s)	663
Eco57I	CTGAAG	2 cut(s)	482, 651
EcoT22I	ATGCAT	1 cut(s)	872
FaeI	CATG	3 cut(s)	413, 783, 809
FatI	CATG	3 cut(s)	409, 779, 805
FauI	CCCGC	2 cut(s)	248, 266
Fnu4HI	GCNGC	6 cut(s)	219, 305, 345, 348, 378, 404
FokI	GGATG	2 cut(s)	533, 572
Fsp4HI	GCNGC	6 cut(s)	219, 305, 345, 348, 378, 404
FspBI	CTAG	3 cut(s)	224, 564, 626
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	6 cut(s)	219, 305, 345, 348, 378, 404
GsaI	CCCAGC	1 cut(s)	214
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	154, 248, 368
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	3 cut(s)	413, 783, 809
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	3 cut(s)	90, 103, 514
HindII	GTYRAC	3 cut(s)	90, 103, 514
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	6 cut(s)	77, 99, 176, 230, 326, 436
HphI	GGTGA	3 cut(s)	175, 763, 809
Hpy166II	GTNNAC	5 cut(s)	90, 103, 514, 666, 748
Hpy188I	TCNGA	5 cut(s)	173, 331, 443, 462, 826
Hpy188III	TCNNGA	4 cut(s)	323, 419, 575, 806
Hpy8I	GTNNAC	5 cut(s)	90, 103, 514, 666, 748
HpyAV	CCTTC	3 cut(s)	205, 457, 725
HpyCH4III	ACNGT	2 cut(s)	87, 107
HpyCH4IV	ACGT	2 cut(s)	64, 526
HpyCH4V	TGCA	6 cut(s)	307, 539, 608, 618, 673, 870
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 374, 396
HpyF3I	CTNAG	5 cut(s)	156, 440, 704, 823, 846
HpySE526I	ACGT	2 cut(s)	64, 526
Hsp92II	CATG	3 cut(s)	413, 783, 809
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	159, 542
LmnI	GCTCC	2 cut(s)	120, 653
Lsp1109I	GCAGC	4 cut(s)	205, 291, 331, 334
LweI	GCATC	2 cut(s)	550, 857
MaeI	CTAG	3 cut(s)	224, 564, 626
MaeII	ACGT	2 cut(s)	64, 526
MaeIII	GTNAC	2 cut(s)	592, 707
MalI	GATC	2 cut(s)	161, 544
MbiI	CCGCTC	2 cut(s)	403, 648
MboI	GATC	2 cut(s)	159, 542
MboII	GAAGA	7 cut(s)	143, 146, 434, 446, 644, 706, 850
MluCI	AATT	4 cut(s)	354, 446, 698, 828
MlyI	GAGTC	3 cut(s)	86, 108, 170
Mph1103I	ATGCAT	1 cut(s)	872
MroXI	GAANNNNTTC	1 cut(s)	854
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	797
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	224, 374, 396
NdeII	GATC	2 cut(s)	159, 542
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	413, 783, 809
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	592, 707
NsiI	ATGCAT	1 cut(s)	872
NspI	RCATGY	1 cut(s)	413
PagI	TCATGA	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	154
PciI	ACATGT	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	3 cut(s)	230, 326, 436
Pfl23II	CGTACG	1 cut(s)	65
PkrI	GCNGC	6 cut(s)	220, 306, 346, 349, 379, 405
PleI	GAGTC	3 cut(s)	85, 107, 170
PpsI	GAGTC	3 cut(s)	85, 107, 170
Ppu21I	YACGTR	1 cut(s)	65
PscI	ACATGT	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	210
PspLI	CGTACG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	2 cut(s)	366, 663
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	3 cut(s)	67, 278, 428
RsaNI	GTAC	3 cut(s)	66, 277, 427
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	6 cut(s)	219, 305, 345, 348, 378, 404
Sau3AI	GATC	2 cut(s)	159, 542
Sau96I	GGNCC	2 cut(s)	366, 663
SchI	GAGTC	3 cut(s)	86, 108, 170
SfaNI	GCATC	2 cut(s)	550, 857
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	663
SmiMI	CAYNNNNRTG	1 cut(s)	797
SnaBI	TACGTA	1 cut(s)	65
Sse9I	AATT	4 cut(s)	354, 446, 698, 828
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	5 cut(s)	241, 273, 377, 403, 646
SspMI	CTAG	3 cut(s)	224, 564, 626
StuI	AGGCCT	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	87, 107
TaiI	ACGT	2 cut(s)	67, 529
TasI	AATT	4 cut(s)	354, 446, 698, 828
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	2 cut(s)	380, 406
TfiI	GAWTC	3 cut(s)	230, 326, 436
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	592, 707
TseI	GCWGC	4 cut(s)	218, 304, 344, 347
Tsp45I	GTSAC	2 cut(s)	592, 707
TspDTI	ATGAA	3 cut(s)	446, 546, 603
TspGWI	ACGGA	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	663
XapI	RAATTY	2 cut(s)	446, 698
XceI	RCATGY	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	3 cut(s)	224, 564, 626
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.