Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Reverse (-)

10868838 .. 10871181

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGACCTGAAATCGTGTTGTTTGGAGACTCGATAACAGAGCAGTCCTTCCAATCAGGAGGCTGGGGTGCCGCTCTTGCTGACACCTATTCTCGCAAGGCTGATGTCAAAGTTCGTGGCTATGGTGGGTACAACACCAGATGGGCGCTGTTCTTGTTGCATCAGATCTTTCCTCTGGATTCCAGAAAACCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGATGCAGCTATTTTGGGGAGGACAAGTGAACGACAACATGTTCCTCTTGAAGAGTTCAAGGAGAATCTCAGAAAAATTGTTCTCCATTTGAAGGAGTGCAGTCCCACAATTCTGATTGTGCTTATCACTCCACCACCTGTGGATGAGGAAGGGCGTAATGAATATGCACGATCTTTGTATGGTGAGGATGCTAGGAAACTGCCAGAAAGGACAAATGAACTAGCTGAGGAAATGGGTATCCGCTCCATCAATCTTTGGTCCAAGTTGCAGGAAACAGAGGGTTGGCAGAAGAAATTTCTAAGCGACGGGTTGCACCTAACACCAGAAGGCAATGCTGTAGTCCACCAAGAAGTTGTAAGAGTTTTCAAGGAAGCATGGTTTTCTGCTGACGAAATGCCTTATGATTTTCCTCACCACTCAGTAATTGATGGGAAGAGCCCTGAGAAAGCTTTTGAGCAAAGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

231

Amino Acids

26.24

Weight (kDa)

5.7

Isoelectric Point (pI)

50.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	5 - 192	3.2e-31	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL_2	PF13472	7 - 187	4.9e-27	GDSL-like Lipase/Acylhydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	74, 468
AciI	CCGC	2 cut(s)	72, 466
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	275, 283, 316, 592
AluBI	AGCT	3 cut(s)	233, 449, 674
AluI	AGCT	3 cut(s)	233, 449, 674
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	3 cut(s)	197, 200, 230
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	219, 483
AsuHPI	GGTGA	2 cut(s)	419, 629
AvaII	GGWCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	665
BbvCI	CCTCAGC	1 cut(s)	450
BbvI	GCAGC	3 cut(s)	184, 187, 242
BccI	CCATC	3 cut(s)	135, 479, 647
BciVI	GTATCC	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	417, 446
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	4 cut(s)	72, 198, 201, 231
BlsI	GCNGC	4 cut(s)	73, 199, 202, 232
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	219, 483
BmiI	GGNNCC	2 cut(s)	70, 220
BmsI	GCATC	4 cut(s)	169, 217, 403, 677
Bpu10I	CCTNAGC	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	562
BseGI	GGATG	2 cut(s)	373, 418
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	4 cut(s)	307, 441, 657, 657
BseXI	GCAGC	3 cut(s)	184, 187, 242
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	665
Bsp143I	GATC	2 cut(s)	165, 395
BspACI	CCGC	2 cut(s)	72, 466
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	4 cut(s)	306, 442, 656, 658
BspLI	GGNNCC	2 cut(s)	70, 220
BspQI	GCTCTTC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	2 cut(s)	74, 468
BsrDI	GCAATG	1 cut(s)	562
BssMI	GATC	2 cut(s)	165, 395
Bst6I	CTCTTC	2 cut(s)	270, 653
BstDEI	CTNAG	5 cut(s)	293, 450, 524, 643, 666
BstF5I	GGATG	2 cut(s)	373, 418
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	168, 398
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	165, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 227
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	184, 187, 242
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	373, 418
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	219, 483
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	2 cut(s)	263, 600
CviJI	RGCY	8 cut(s)	63, 101, 120, 221, 233, 449, 663, 674
CviKI_1	RGCY	8 cut(s)	63, 101, 120, 221, 233, 449, 663, 674
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	293, 450, 524, 643, 666
DpnI	GATC	2 cut(s)	167, 397
DpnII	GATC	2 cut(s)	165, 395
Eam1104I	CTCTTC	2 cut(s)	270, 653
EarI	CTCTTC	2 cut(s)	270, 653
Eco24I	GRGCYC	1 cut(s)	665
Eco47I	GGWCC	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	692
EcoT38I	GRGCYC	1 cut(s)	665
FaeI	CATG	2 cut(s)	266, 603
FaiI	YATR	8 cut(s)	123, 264, 390, 405, 601, 627, 692, 694
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	2 cut(s)	262, 599
Fnu4HI	GCNGC	4 cut(s)	72, 198, 201, 231
FokI	GGATG	2 cut(s)	380, 425
FriOI	GRGCYC	1 cut(s)	665
Fsp4HI	GCNGC	4 cut(s)	72, 198, 201, 231
FspBI	CTAG	2 cut(s)	417, 446
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	4 cut(s)	72, 198, 201, 231
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	266, 603
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	3 cut(s)	29, 179, 289
HphI	GGTGA	2 cut(s)	419, 629
Hpy166II	GTNNAC	2 cut(s)	254, 568
Hpy188I	TCNGA	3 cut(s)	165, 296, 339
Hpy188III	TCNNGA	4 cut(s)	57, 176, 183, 272
Hpy8I	GTNNAC	2 cut(s)	254, 568
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	4 cut(s)	58, 310, 368, 545
HpyCH4V	TGCA	7 cut(s)	160, 230, 324, 392, 493, 538, 690
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 227
HpyF3I	CTNAG	5 cut(s)	293, 450, 524, 643, 666
Hsp92II	CATG	2 cut(s)	266, 603
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	165, 395
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	3 cut(s)	184, 187, 242
LweI	GCATC	4 cut(s)	169, 217, 403, 677
MaeI	CTAG	2 cut(s)	417, 446
MalI	GATC	2 cut(s)	167, 397
MbiI	CCGCTC	2 cut(s)	74, 468
MboI	GATC	2 cut(s)	165, 395
MboII	GAAGA	3 cut(s)	287, 526, 670
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	665
MluCI	AATT	5 cut(s)	207, 300, 333, 518, 648
MlyI	GAGTC	1 cut(s)	23
Mph1103I	ATGCAT	1 cut(s)	692
MwoI	GCNNNNNNNGC	2 cut(s)	77, 227
NdeII	GATC	2 cut(s)	165, 395
NlaIII	CATG	2 cut(s)	266, 603
NlaIV	GGNNCC	2 cut(s)	70, 220
NsiI	ATGCAT	1 cut(s)	692
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	179, 289
PkrI	GCNGC	4 cut(s)	73, 199, 202, 232
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	70, 220
PspPI	GGNCC	2 cut(s)	219, 483
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	653
SatI	GCNGC	4 cut(s)	72, 198, 201, 231
Sau3AI	GATC	2 cut(s)	165, 395
Sau96I	GGNCC	2 cut(s)	219, 483
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	665
SetI	ASST	8 cut(s)	10, 89, 193, 235, 364, 451, 543, 676
SfaNI	GCATC	4 cut(s)	169, 217, 403, 677
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	1 cut(s)	483
Sse9I	AATT	5 cut(s)	207, 300, 333, 518, 648
SsiI	CCGC	2 cut(s)	72, 466
SspMI	CTAG	2 cut(s)	417, 446
TaqI	TCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	207, 300, 333, 518, 648
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	179, 289
TseI	GCWGC	3 cut(s)	197, 200, 230
TspDTI	ATGAA	2 cut(s)	399, 456
VpaK11BI	GGWCC	1 cut(s)	483
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	417, 446
Zsp2I	ATGCAT	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.