Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8502973.1

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Reverse (-)

643 .. 2987

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8502973.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgagacctgaaatcgtgttgtttggagactcgataacagagcagtccttccaatcaggaggctggggtgccgctcttgctgacacttattctcgcaaggctgatgtcaaagttcgtggctatggtgggtacaacaccagatgggcgctgttcttgttgcatcagatctttcctctggattccagaaaacctcctgctgctgctacaattttctttggggccaatgatgcagctattttggggagaacaagtgaacggcaacatgttcctcttgaagagttcaaggagaatctcagaaaaattgttctccatttgaaggagtgcagtcccacaattctgattgtgcttatcactccaccacctgtggatgaggaagggcgtaatgaatatgcacgatctttgtatggtgaggatgctaggaaactgccagaaaggacaaatgaagcagcagaagtttatgcaaagaagtgccttgagctagctgaggaaatgggtatccgctccatcaatctttggtccaagttgcaggaaacagagggttggcagaagaaatttctaagcgacgggttgcacctaacaccagaaggcaatgctgtagtcctccaagaagttgtaagagttttcaaggaagcatggttttctgctgacgaaatgccttatgattttcctcaccactcagtaattgatgggaagagccctgagaaagcttttgagcaaagatgcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

242

Amino Acids

27.42

Weight (kDa)

5.62

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	74, 501
AciI	CCGC	2 cut(s)	72, 499
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	275, 283, 316, 625
AluBI	AGCT	4 cut(s)	233, 478, 482, 707
AluI	AGCT	4 cut(s)	233, 478, 482, 707
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	4 cut(s)	197, 200, 230, 446
ApoI	RAATTY	1 cut(s)	551
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	219, 516
AsuHPI	GGTGA	2 cut(s)	419, 662
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	698
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	4 cut(s)	184, 187, 242, 458
BccI	CCATC	3 cut(s)	135, 512, 680
BceAI	ACGGC	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	417, 479
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	506
BglII	AGATCT	1 cut(s)	165
BisI	GCNGC	5 cut(s)	72, 198, 201, 231, 447
BlsI	GCNGC	5 cut(s)	73, 199, 202, 232, 448
Bme18I	GGWCC	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	219, 516
BmiI	GGNNCC	2 cut(s)	70, 220
BmsI	GCATC	4 cut(s)	169, 217, 403, 710
BmtI	GCTAGC	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	494
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	595
BseGI	GGATG	2 cut(s)	373, 418
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	4 cut(s)	307, 474, 690, 690
BseXI	GCAGC	4 cut(s)	184, 187, 242, 458
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	698
Bsp143I	GATC	2 cut(s)	165, 395
BspACI	CCGC	2 cut(s)	72, 499
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	4 cut(s)	306, 475, 689, 691
BspLI	GGNNCC	2 cut(s)	70, 220
BspOI	GCTAGC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	686
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	2 cut(s)	74, 501
BsrDI	GCAATG	1 cut(s)	595
BssMI	GATC	2 cut(s)	165, 395
Bst6I	CTCTTC	2 cut(s)	270, 686
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	5 cut(s)	293, 483, 557, 676, 699
BstF5I	GGATG	2 cut(s)	373, 418
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	168, 398
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	2 cut(s)	165, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 227
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	184, 187, 242, 458
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	506
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	373, 418
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	219, 516
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CviAII	CATG	2 cut(s)	263, 633
CviJI	RGCY	9 cut(s)	63, 101, 120, 221, 233, 478, 482, 696, 707
CviKI_1	RGCY	9 cut(s)	63, 101, 120, 221, 233, 478, 482, 696, 707
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	293, 483, 557, 676, 699
DpnI	GATC	2 cut(s)	167, 397
DpnII	GATC	2 cut(s)	165, 395
Eam1104I	CTCTTC	2 cut(s)	270, 686
EarI	CTCTTC	2 cut(s)	270, 686
Eco24I	GRGCYC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	725
EcoT38I	GRGCYC	1 cut(s)	698
FaeI	CATG	2 cut(s)	266, 636
FaiI	YATR	9 cut(s)	123, 264, 390, 405, 459, 634, 660, 725, 727
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	2 cut(s)	262, 632
Fnu4HI	GCNGC	5 cut(s)	72, 198, 201, 231, 447
FokI	GGATG	2 cut(s)	380, 425
FriOI	GRGCYC	1 cut(s)	698
Fsp4HI	GCNGC	5 cut(s)	72, 198, 201, 231, 447
FspBI	CTAG	2 cut(s)	417, 479
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	5 cut(s)	72, 198, 201, 231, 447
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	266, 636
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	3 cut(s)	29, 179, 289
HphI	GGTGA	2 cut(s)	419, 662
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	165, 296, 339
Hpy188III	TCNNGA	4 cut(s)	57, 176, 183, 272
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	4 cut(s)	58, 310, 368, 578
HpyCH4V	TGCA	8 cut(s)	160, 230, 324, 392, 461, 526, 571, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 227
HpyF3I	CTNAG	5 cut(s)	293, 483, 557, 676, 699
Hsp92II	CATG	2 cut(s)	266, 636
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	165, 395
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	4 cut(s)	184, 187, 242, 458
LweI	GCATC	4 cut(s)	169, 217, 403, 710
MaeI	CTAG	2 cut(s)	417, 479
MalI	GATC	2 cut(s)	167, 397
MbiI	CCGCTC	2 cut(s)	74, 501
MboI	GATC	2 cut(s)	165, 395
MboII	GAAGA	3 cut(s)	287, 559, 703
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	698
MluCI	AATT	5 cut(s)	207, 300, 333, 551, 681
MlyI	GAGTC	1 cut(s)	23
Mph1103I	ATGCAT	1 cut(s)	725
MwoI	GCNNNNNNNGC	2 cut(s)	77, 227
NdeII	GATC	2 cut(s)	165, 395
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	266, 636
NlaIV	GGNNCC	2 cut(s)	70, 220
NsiI	ATGCAT	1 cut(s)	725
NspI	RCATGY	1 cut(s)	266
PciI	ACATGT	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	686
PfeI	GAWTC	2 cut(s)	179, 289
PkrI	GCNGC	5 cut(s)	73, 199, 202, 232, 448
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	70, 220
PspPI	GGNCC	2 cut(s)	219, 516
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	686
SatI	GCNGC	5 cut(s)	72, 198, 201, 231, 447
Sau3AI	GATC	2 cut(s)	165, 395
Sau96I	GGNCC	2 cut(s)	219, 516
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	698
SetI	ASST	8 cut(s)	10, 193, 235, 364, 480, 484, 576, 709
SfaNI	GCATC	4 cut(s)	169, 217, 403, 710
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	5 cut(s)	207, 300, 333, 551, 681
SsiI	CCGC	2 cut(s)	72, 499
SspMI	CTAG	2 cut(s)	417, 479
TaqI	TCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	207, 300, 333, 551, 681
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	179, 289
TseI	GCWGC	4 cut(s)	197, 200, 230, 446
TspDTI	ATGAA	2 cut(s)	399, 456
VpaK11BI	GGWCC	1 cut(s)	516
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	2 cut(s)	417, 479
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.