Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Reverse (-)

19933416 .. 19935288

Gene Structure 1873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15410.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGGCCTGAGATCGTGTTGTTCGGAGACTCAATCACCGAACAATCCTTCCAATCGGGTGGCTGGGGCGCCGCTCTAGCTGATTCTTACTCCCGCAAGGCCGATGTAAAAGTTCGTGGGTATGGCGGGTACAACACGAGGTGGGCATTGTTCTTGCTGCAGCACCTCTTTCCTCTGGATTCTGATAAACCTCCTGCTGCTGCCACGATTTTCTTTGGGGCCAATGACGCGGCTATTTTAGGCAGAACAAGCGAGCGGCAACATGTTCCTCTTGAAGAGTACAAGGAGAATCTCAGAAAAACTGTTCTTCATCTGAAGGAGTGTTCCCCCACCATTTTGATTGTGCTTATTACTCCACCACCTGTTGACGAGGATGGGCGTAATGAATATGCACAATCTTTATATGGTAAGGATGCTAGGGAACTTCCAGAAAGGACGAATGAAGTGACAGGAGTTTATGCAAAGAAGTGCATTGAGCTAGCTGAAGAAATGGGTCTCCGTTCCATCAATCTTTGGTCCACATTGCAGGAAACAGAGGGTTGGCAGAAGAAATTTCTAAGTGACGGGTTACACCTAACACCAGAAGGCAATGCTGTTGTCCACCAAGAAGTCGTCAAAGTTTTCACCGAAGCATGGTTTTCTGCCGCGGAAATGCCTTATGATTTCCCTCACCACTCAGAAATTGACGGGAAGAACCCTGAGAAAGCTTTCCAGCAACGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

243

Amino Acids

27.27

Weight (kDa)

5.33

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	74, 256
AccII	CGCG	2 cut(s)	230, 647
AciI	CCGC	7 cut(s)	72, 94, 126, 230, 256, 645, 647
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	2 cut(s)	335, 504
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	131, 281
AfiI	CCNNNNNNNGG	1 cut(s)	633
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	275
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	4 cut(s)	80, 478, 482, 707
AluI	AGCT	4 cut(s)	80, 478, 482, 707
Alw26I	GTCTC	2 cut(s)	21, 500
AoxI	GGCC	3 cut(s)	5, 99, 219
ApeKI	GCWGC	4 cut(s)	157, 160, 197, 200
ApoI	RAATTY	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	219, 516
AsuHPI	GGTGA	3 cut(s)	28, 616, 662
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	144, 172, 184, 187
BccI	CCATC	2 cut(s)	368, 512
BcoDI	GTCTC	2 cut(s)	21, 500
BfaI	CTAG	3 cut(s)	77, 417, 479
BfmI	CTRYAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	72
BisI	GCNGC	8 cut(s)	72, 158, 161, 198, 201, 231, 257, 645
BlsI	GCNGC	8 cut(s)	73, 159, 162, 199, 202, 232, 258, 646
Bme18I	GGWCC	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	219, 516
BmiI	GGNNCC	2 cut(s)	70, 220
BmsI	GCATC	2 cut(s)	403, 710
BmtI	GCTAGC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	1 cut(s)	633
Bse3DI	GCAATG	2 cut(s)	521, 595
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	379, 418
BseLI	CCNNNNNNNGG	1 cut(s)	633
BseMI	GCAATG	2 cut(s)	521, 595
BseMII	CTCAG	3 cut(s)	307, 690, 690
BseXI	GCAGC	4 cut(s)	144, 172, 184, 187
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	2 cut(s)	230, 647
BshFI	GGCC	3 cut(s)	7, 101, 221
BshNI	GGYRCC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	633
BsmAI	GTCTC	2 cut(s)	21, 500
BsnI	GGCC	3 cut(s)	7, 101, 221
Bso31I	GGTCTC	1 cut(s)	500
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	7 cut(s)	72, 94, 126, 230, 256, 645, 647
BspANI	GGCC	3 cut(s)	7, 101, 221
BspCNI	CTCAG	3 cut(s)	306, 689, 691
BspFNI	CGCG	2 cut(s)	230, 647
BspLI	GGNNCC	2 cut(s)	70, 220
BspMAI	CTGCAG	1 cut(s)	162
BspOI	GCTAGC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	2 cut(s)	74, 256
BsrDI	GCAATG	2 cut(s)	521, 595
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	1 cut(s)	12
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	136
Bst2BI	CACGAG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	254, 480
BstDEI	CTNAG	5 cut(s)	9, 293, 557, 676, 699
BstDSI	CCRYGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	379, 418
BstFNI	CGCG	2 cut(s)	230, 647
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	15
BstMAI	GTCTC	2 cut(s)	21, 500
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 227, 249
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	158
BstUI	CGCG	2 cut(s)	230, 647
BstV1I	GCAGC	4 cut(s)	144, 172, 184, 187
BstXI	CCANNNNNNTGG	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	7, 101, 221
BtgI	CCRYGG	1 cut(s)	645
BtsCI	GGATG	2 cut(s)	379, 418
Cac8I	GCNNGC	2 cut(s)	254, 480
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	219, 516
Cfr42I	CCGCGG	1 cut(s)	648
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	130, 280
CviAII	CATG	2 cut(s)	263, 633
CviJI	RGCY	9 cut(s)	7, 63, 80, 101, 221, 233, 478, 482, 707
CviKI_1	RGCY	9 cut(s)	7, 63, 80, 101, 221, 233, 478, 482, 707
CviQI	GTAC	2 cut(s)	130, 280
DdeI	CTNAG	5 cut(s)	9, 293, 557, 676, 699
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	335, 504
EcoT22I	ATGCAT	1 cut(s)	725
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
FaeI	CATG	2 cut(s)	266, 636
FatI	CATG	2 cut(s)	262, 632
FauI	CCCGC	2 cut(s)	101, 119
Fnu4HI	GCNGC	8 cut(s)	72, 158, 161, 198, 201, 231, 257, 645
FokI	GGATG	2 cut(s)	386, 425
Fsp4HI	GCNGC	8 cut(s)	72, 158, 161, 198, 201, 231, 257, 645
FspBI	CTAG	3 cut(s)	77, 417, 479
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	8 cut(s)	72, 158, 161, 198, 201, 231, 257, 645
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	3 cut(s)	7, 101, 221
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	266, 636
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	4 cut(s)	29, 83, 179, 289
HphI	GGTGA	3 cut(s)	28, 616, 662
Hpy166II	GTNNAC	3 cut(s)	367, 519, 601
Hpy188I	TCNGA	5 cut(s)	26, 184, 296, 315, 679
Hpy188III	TCNNGA	3 cut(s)	176, 272, 428
Hpy8I	GTNNAC	3 cut(s)	367, 519, 601
HpyAV	CCTTC	3 cut(s)	58, 310, 578
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4V	TGCA	6 cut(s)	160, 392, 461, 471, 526, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 227, 249
HpyF3I	CTNAG	5 cut(s)	9, 293, 557, 676, 699
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	266, 636
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
KspI	CCGCGG	1 cut(s)	648
Kzo9I	GATC	1 cut(s)	12
Lsp1109I	GCAGC	4 cut(s)	144, 172, 184, 187
LweI	GCATC	2 cut(s)	403, 710
MaeI	CTAG	3 cut(s)	77, 417, 479
MaeIII	GTNAC	3 cut(s)	445, 560, 567
MalI	GATC	1 cut(s)	14
MbiI	CCGCTC	2 cut(s)	74, 256
MboI	GATC	1 cut(s)	12
MboII	GAAGA	5 cut(s)	287, 299, 497, 559, 703
MluCI	AATT	2 cut(s)	551, 681
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	8 cut(s)	132, 176, 183, 201, 279, 364, 529, 678
Mph1103I	ATGCAT	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	647
MvnI	CGCG	2 cut(s)	230, 647
MwoI	GCNNNNNNNGC	3 cut(s)	77, 227, 249
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	1 cut(s)	12
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	266, 636
NlaIV	GGNNCC	2 cut(s)	70, 220
NmuCI	GTSAC	2 cut(s)	445, 560
NsiI	ATGCAT	1 cut(s)	725
NspI	RCATGY	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	7
PciI	ACATGT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	3 cut(s)	83, 179, 289
PkrI	GCNGC	8 cut(s)	73, 159, 162, 199, 202, 232, 258, 646
PleI	GAGTC	1 cut(s)	23
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	70, 220
PspPI	GGNCC	2 cut(s)	219, 516
PstI	CTGCAG	1 cut(s)	162
RsaI	GTAC	2 cut(s)	131, 281
RsaNI	GTAC	2 cut(s)	130, 280
SacII	CCGCGG	1 cut(s)	648
SatI	GCNGC	8 cut(s)	72, 158, 161, 198, 201, 231, 257, 645
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	2 cut(s)	219, 516
SchI	GAGTC	1 cut(s)	23
SetI	ASST	9 cut(s)	82, 143, 168, 193, 364, 480, 484, 576, 709
SfaNI	GCATC	2 cut(s)	403, 710
SfcI	CTRYAG	1 cut(s)	158
SfoI	GGCGCC	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	648
SgrBI	CCGCGG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	516
Sse9I	AATT	2 cut(s)	551, 681
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	7 cut(s)	72, 94, 126, 230, 256, 645, 647
SspDI	GGCGCC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	77, 417, 479
StuI	AGGCCT	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	304
TasI	AATT	2 cut(s)	551, 681
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	4 cut(s)	74, 233, 259, 647
TfiI	GAWTC	3 cut(s)	83, 179, 289
TseFI	GTSAC	2 cut(s)	445, 560
TseI	GCWGC	4 cut(s)	157, 160, 197, 200
Tsp45I	GTSAC	2 cut(s)	445, 560
TspDTI	ATGAA	3 cut(s)	299, 399, 456
TspGWI	ACGGA	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	516
XapI	RAATTY	1 cut(s)	551
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	3 cut(s)	77, 417, 479
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.