Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Forward (+)

57894691 .. 57896992

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGACCTGAAATCGTGTTGTTTGGAGACTCGATAACAGAGCAGTCCTTCCAATTAGGAGGCTGGGGTGCCGCTCTTGCTGACACCTATTCTCGCAAGGATTCCAGAAAACCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGATGCAGCTATTTTGGGGAGAACAAGTGAACGGCAACATGTTCCTCTTGAAGAGTTCAAGGAGAATCTCAGAAAAATTGTTCTCCATTTGAAGGAGTGCAGTCCCACAATTCTGATTGTGCTTATCACTCCACCACCTGTGGATGAGGAAGGGCGTAATGAATATGCACGATCTTTGTATGGTGAGGATGCTAGGAAACTGCCAGAAAGGACAAATGAAGCAGCAGAAGTTTATGCAAAGAAGTGCCTTGAGCTAGCTGAGGAAATGGGTATCCGCTCCATCAATCTTTGGTCCAAGTTGCAGGAAACAGAGGGTTGGCAGAAGAAGTTTCAAAGCGACGGGTTGCACCTAACACCAGAAGGCAATGCTGTAGTCCACCAAGAAGTTGTAAGAGTTTTCAAGGAAGCATGGTTTTCTGCTGACGAAATGCCTTATGATTTTCCTCACCACTCAGTAATTGATGGGAAGAACCCTGAGAAAGCTTTTGAGCAAAGATGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

217

Amino Acids

24.5

Weight (kDa)

5.36

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL_2	PF13472	32 - 172	1.4e-14	GDSL-like Lipase/Acylhydrolase family
Lipase_GDSL	PF00657	33 - 177	8.9e-22	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	74, 423
AciI	CCGC	2 cut(s)	72, 421
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	197, 205, 238, 479, 547
AluBI	AGCT	4 cut(s)	155, 400, 404, 629
AluI	AGCT	4 cut(s)	155, 400, 404, 629
Alw26I	GTCTC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	4 cut(s)	119, 122, 152, 368
AspS9I	GGNCC	2 cut(s)	141, 438
AsuHPI	GGTGA	2 cut(s)	341, 584
AsuNHI	GCTAGC	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	106, 109, 164, 380
BccI	CCATC	2 cut(s)	434, 602
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	339, 401
BfmI	CTRYAG	1 cut(s)	516
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	5 cut(s)	72, 120, 123, 153, 369
BlsI	GCNGC	5 cut(s)	73, 121, 124, 154, 370
Bme18I	GGWCC	1 cut(s)	438
BmgT120I	GGNCC	2 cut(s)	141, 438
BmiI	GGNNCC	2 cut(s)	70, 142
BmsI	GCATC	3 cut(s)	139, 325, 632
BmtI	GCTAGC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	517
BseGI	GGATG	2 cut(s)	295, 340
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	4 cut(s)	229, 396, 612, 612
BseXI	GCAGC	4 cut(s)	106, 109, 164, 380
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	317
BspACI	CCGC	2 cut(s)	72, 421
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	4 cut(s)	228, 397, 611, 613
BspLI	GGNNCC	2 cut(s)	70, 142
BspOI	GCTAGC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	2 cut(s)	74, 423
BsrDI	GCAATG	1 cut(s)	517
BssMI	GATC	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	215, 405, 598, 621
BstF5I	GGATG	2 cut(s)	295, 340
BstKTI	GATC	1 cut(s)	320
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 149
BstNSI	RCATGY	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	106, 109, 164, 380
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	295, 340
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	141, 438
CviAII	CATG	2 cut(s)	185, 555
CviJI	RGCY	6 cut(s)	63, 143, 155, 400, 404, 629
CviKI_1	RGCY	6 cut(s)	63, 143, 155, 400, 404, 629
DdeI	CTNAG	4 cut(s)	215, 405, 598, 621
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	438
EcoT22I	ATGCAT	1 cut(s)	647
FaeI	CATG	2 cut(s)	188, 558
FaiI	YATR	8 cut(s)	186, 312, 327, 381, 556, 582, 647, 649
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	2 cut(s)	184, 554
Fnu4HI	GCNGC	5 cut(s)	72, 120, 123, 153, 369
FokI	GGATG	2 cut(s)	302, 347
Fsp4HI	GCNGC	5 cut(s)	72, 120, 123, 153, 369
FspBI	CTAG	2 cut(s)	339, 401
GluI	GCNGC	5 cut(s)	72, 120, 123, 153, 369
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	188, 558
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	3 cut(s)	29, 101, 211
HphI	GGTGA	2 cut(s)	341, 584
Hpy166II	GTNNAC	2 cut(s)	176, 523
Hpy188I	TCNGA	2 cut(s)	218, 261
Hpy188III	TCNNGA	2 cut(s)	105, 194
Hpy8I	GTNNAC	2 cut(s)	176, 523
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	4 cut(s)	58, 232, 290, 500
HpyCH4V	TGCA	7 cut(s)	152, 246, 314, 383, 448, 493, 645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 149
HpyF3I	CTNAG	4 cut(s)	215, 405, 598, 621
Hsp92II	CATG	2 cut(s)	188, 558
Kzo9I	GATC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	428
LpnPI	CCDG	9 cut(s)	21, 49, 118, 129, 297, 363, 434, 516, 633
Lsp1109I	GCAGC	4 cut(s)	106, 109, 164, 380
LweI	GCATC	3 cut(s)	139, 325, 632
MaeI	CTAG	2 cut(s)	339, 401
MalI	GATC	1 cut(s)	319
MbiI	CCGCTC	2 cut(s)	74, 423
MboI	GATC	1 cut(s)	317
MboII	GAAGA	3 cut(s)	209, 481, 625
MluCI	AATT	5 cut(s)	53, 129, 222, 255, 603
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	8 cut(s)	53, 123, 201, 286, 325, 400, 451, 600
Mph1103I	ATGCAT	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	77, 149
NdeII	GATC	1 cut(s)	317
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	188, 558
NlaIV	GGNNCC	2 cut(s)	70, 142
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	1 cut(s)	188
PciI	ACATGT	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	101, 211
PkrI	GCNGC	5 cut(s)	73, 121, 124, 154, 370
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	70, 142
PspPI	GGNCC	2 cut(s)	141, 438
SatI	GCNGC	5 cut(s)	72, 120, 123, 153, 369
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	2 cut(s)	141, 438
SchI	GAGTC	1 cut(s)	23
SetI	ASST	9 cut(s)	10, 89, 115, 157, 286, 402, 406, 498, 631
SfaNI	GCATC	3 cut(s)	139, 325, 632
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	438
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	5 cut(s)	53, 129, 222, 255, 603
SsiI	CCGC	2 cut(s)	72, 421
SspMI	CTAG	2 cut(s)	339, 401
TaqI	TCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	53, 129, 222, 255, 603
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	101, 211
TseI	GCWGC	4 cut(s)	119, 122, 152, 368
TspDTI	ATGAA	2 cut(s)	321, 378
VpaK11BI	GGWCC	1 cut(s)	438
XceI	RCATGY	1 cut(s)	188
XspI	CTAG	2 cut(s)	339, 401
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.