Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009216

Physical Location & Seq

Genomic Coordinates Reverse (-)

14694266 .. 14696789

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGGCCTGAGATTGTGCTGTTCGGAGACTCAATTACAGAGCAATCCTTCAGATCAGGTGGCTGGGGTGCCGCTCTTGCTGATACTTACTCTCGCAAGGCTGATGTAAAAGTTCGTGGGTATGGTGGGTACAACACCCGATGGGCATTGTTCTTGATGCAGCACCTCTTCCCTCTGGATTCTAAAAAGCCTCCTGCTGCTGCCACAATTTTCTTTGGGGCCAATGATGCTGCTATTTTGGGGAGAACAAGTGAACGACAACATGTTCCTGTTGAAGAGTACAAGGAGAATCTCAGAAAAATTGTTCTTCATATGAAGGAATGTTCTCCCGCCATTTTGATTGTGCTTATTACTCCACCACCTGTTGATGAGGATGGGCGTAATGAATATGCCCGATCTTTATATGGTGAGGATGCTAGGGAAGAGCCGGAGAGGATGAATGAAGTGACAGGAATTTATGCAAAGAAGTGCATTGAGCTAGCTGAGGAAATGGGTCTCCGCTCCATCAATCTTTGGTCCAAGTTGCAGGAAACGGAGGGTTGGCAGAAGAAATTTCTGAGTGACGGGTTGCACCTAACACCAGAAGGCAATGCTGTAGTCCACCAAGAAGTTGTAAGAGATTTCAGGGAAGCATGGTTTTCTGCTGAAGAAATGCCTTATGATTTCCCTCACCACTCAAACATTGATGAGAAGAACCCTGAGAAAGCTTTCCAGCAACGATGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL Lipase_GDSL_2

Protein Analysis

243

Amino Acids

27.62

Weight (kDa)

5.47

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62930 AT5G62930 AT5G62930
fragaria_vesca	FvH4_5g05410 FvH4_5g05410 FvH4_5g05410
malus_domestica	MD06G1173000.v1.1 MD14G1179100.v1.1
prunus_persica	Prupe.5G172500_v2.0.a1
pyrus_communis	pycom06g15410 pycom14g14920
rosa_chinensis	RchiOBHm_Chr7g0193421
rosa_laevigata	RLG00000004269
rosa_multiflora	Rmu_co8502973.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262110
rosa_rugosa	Rorug07G0009400 Rorug07G0009500
rosa_samantha	Rh7AG136000 Rh7BG136400 Rh7CG139900 Rh7DG137700
rosa_wichuraiana	Rw7G011600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	724
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	2 cut(s)	74, 501
AciI	CCGC	3 cut(s)	72, 330, 499
AcsI	RAATTY	2 cut(s)	453, 551
AcuI	CTGAAG	2 cut(s)	34, 666
AfaI	GTAC	2 cut(s)	131, 281
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	3 cut(s)	478, 482, 707
AluI	AGCT	3 cut(s)	478, 482, 707
Alw26I	GTCTC	2 cut(s)	21, 500
AoxI	GGCC	2 cut(s)	5, 219
ApeKI	GCWGC	4 cut(s)	160, 197, 200, 230
ApoI	RAATTY	2 cut(s)	453, 551
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	219, 516
AsuHPI	GGTGA	2 cut(s)	419, 662
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	4 cut(s)	172, 184, 187, 217
BccI	CCATC	3 cut(s)	135, 368, 512
BcoDI	GTCTC	2 cut(s)	21, 500
BfaI	CTAG	2 cut(s)	417, 479
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	5 cut(s)	72, 161, 198, 201, 231
BlsI	GCNGC	5 cut(s)	73, 162, 199, 202, 232
Bme18I	GGWCC	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	219, 516
BmiI	GGNNCC	2 cut(s)	70, 220
BmsI	GCATC	4 cut(s)	147, 217, 403, 710
BmtI	GCTAGC	1 cut(s)	482
Bpu10I	CCTNAGC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse3DI	GCAATG	1 cut(s)	595
BseGI	GGATG	3 cut(s)	379, 418, 441
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	4 cut(s)	307, 474, 548, 690
BseXI	GCAGC	4 cut(s)	172, 184, 187, 217
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	2 cut(s)	7, 221
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	21, 500
BsnI	GGCC	2 cut(s)	7, 221
Bso31I	GGTCTC	1 cut(s)	500
Bsp143I	GATC	2 cut(s)	53, 395
BspACI	CCGC	3 cut(s)	72, 330, 499
BspANI	GGCC	2 cut(s)	7, 221
BspCNI	CTCAG	4 cut(s)	306, 475, 549, 691
BspLI	GGNNCC	2 cut(s)	70, 220
BspOI	GCTAGC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	500
BsrBI	CCGCTC	2 cut(s)	74, 501
BsrDI	GCAATG	1 cut(s)	595
BssMI	GATC	2 cut(s)	53, 395
Bst6I	CTCTTC	3 cut(s)	173, 270, 417
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	5 cut(s)	9, 293, 483, 557, 699
BstF5I	GGATG	3 cut(s)	379, 418, 441
BstHHI	GCGC	1 cut(s)	725
BstKTI	GATC	2 cut(s)	56, 398
BstMAI	GTCTC	2 cut(s)	21, 500
BstMBI	GATC	2 cut(s)	53, 395
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 227
BstNSI	RCATGY	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	4 cut(s)	172, 184, 187, 217
BsuRI	GGCC	2 cut(s)	7, 221
BtsCI	GGATG	3 cut(s)	379, 418, 441
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	1 cut(s)	725
Cfr13I	GGNCC	2 cut(s)	219, 516
Csp6I	GTAC	2 cut(s)	130, 280
CviAII	CATG	2 cut(s)	263, 633
CviJI	RGCY	9 cut(s)	7, 63, 101, 190, 221, 427, 478, 482, 707
CviKI_1	RGCY	9 cut(s)	7, 63, 101, 190, 221, 427, 478, 482, 707
CviQI	GTAC	2 cut(s)	130, 280
DdeI	CTNAG	5 cut(s)	9, 293, 483, 557, 699
DpnI	GATC	2 cut(s)	55, 397
DpnII	GATC	2 cut(s)	53, 395
Eam1104I	CTCTTC	3 cut(s)	173, 270, 417
EarI	CTCTTC	3 cut(s)	173, 270, 417
Eco147I	AGGCCT	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	34, 666
FaeI	CATG	2 cut(s)	266, 636
FatI	CATG	2 cut(s)	262, 632
FauI	CCCGC	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	72, 161, 198, 201, 231
FokI	GGATG	3 cut(s)	386, 425, 448
Fsp4HI	GCNGC	5 cut(s)	72, 161, 198, 201, 231
FspAI	RTGCGCAY	1 cut(s)	724
FspBI	CTAG	2 cut(s)	417, 479
FspI	TGCGCA	1 cut(s)	724
GlaI	GCGC	1 cut(s)	724
GluI	GCNGC	5 cut(s)	72, 161, 198, 201, 231
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	7, 221
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	725
Hin1II	CATG	2 cut(s)	266, 636
Hin6I	GCGC	1 cut(s)	723
HinP1I	GCGC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	3 cut(s)	29, 179, 289
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	419, 662
Hpy166II	GTNNAC	2 cut(s)	254, 601
Hpy188I	TCNGA	4 cut(s)	26, 53, 296, 558
Hpy188III	TCNNGA	2 cut(s)	154, 176
Hpy8I	GTNNAC	2 cut(s)	254, 601
HpyAV	CCTTC	3 cut(s)	58, 310, 578
HpyCH4V	TGCA	5 cut(s)	160, 461, 471, 526, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 227
HpyF3I	CTNAG	5 cut(s)	9, 293, 483, 557, 699
Hsp92II	CATG	2 cut(s)	266, 636
HspAI	GCGC	1 cut(s)	723
Kzo9I	GATC	2 cut(s)	53, 395
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	4 cut(s)	172, 184, 187, 217
LweI	GCATC	4 cut(s)	147, 217, 403, 710
MaeI	CTAG	2 cut(s)	417, 479
MaeIII	GTNAC	2 cut(s)	445, 560
MalI	GATC	2 cut(s)	55, 397
MbiI	CCGCTC	2 cut(s)	74, 501
MboI	GATC	2 cut(s)	53, 395
MboII	GAAGA	7 cut(s)	160, 287, 299, 434, 559, 659, 703
MluCI	AATT	5 cut(s)	33, 207, 300, 453, 551
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	9 cut(s)	176, 183, 201, 364, 403, 426, 478, 529, 678
MroXI	GAANNNNTTC	1 cut(s)	707
MspI	CCGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	77, 227
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	2 cut(s)	53, 395
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	266, 636
NlaIV	GGNNCC	2 cut(s)	70, 220
NmuCI	GTSAC	2 cut(s)	445, 560
NsbI	TGCGCA	1 cut(s)	724
NspI	RCATGY	1 cut(s)	266
PceI	AGGCCT	1 cut(s)	7
PciI	ACATGT	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	2 cut(s)	179, 289
PkrI	GCNGC	5 cut(s)	73, 162, 199, 202, 232
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	70, 220
PspPI	GGNCC	2 cut(s)	219, 516
RsaI	GTAC	2 cut(s)	131, 281
RsaNI	GTAC	2 cut(s)	130, 280
SapI	GCTCTTC	1 cut(s)	417
SatI	GCNGC	5 cut(s)	72, 161, 198, 201, 231
Sau3AI	GATC	2 cut(s)	53, 395
Sau96I	GGNCC	2 cut(s)	219, 516
SchI	GAGTC	1 cut(s)	23
SetI	ASST	7 cut(s)	61, 168, 364, 480, 484, 576, 709
SfaNI	GCATC	4 cut(s)	147, 217, 403, 710
SfcI	CTRYAG	1 cut(s)	594
SinI	GGWCC	1 cut(s)	516
Sse9I	AATT	5 cut(s)	33, 207, 300, 453, 551
SseBI	AGGCCT	1 cut(s)	7
SsiI	CCGC	3 cut(s)	72, 330, 499
SspMI	CTAG	2 cut(s)	417, 479
StuI	AGGCCT	1 cut(s)	7
TasI	AATT	5 cut(s)	33, 207, 300, 453, 551
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	179, 289
TseFI	GTSAC	2 cut(s)	445, 560
TseI	GCWGC	4 cut(s)	160, 197, 200, 230
Tsp45I	GTSAC	2 cut(s)	445, 560
TspDTI	ATGAA	5 cut(s)	299, 329, 399, 452, 456
TspGWI	ACGGA	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	516
XapI	RAATTY	2 cut(s)	453, 551
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	2 cut(s)	417, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.