Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Reverse (-)

3574961 .. 3580995

Gene Structure 6035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06090.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGGCCTCAGCTTCGCAAAAAGCGACGCCTTCTTCTTCATGTTGCGGCGGCGGCGACGCTTCTTCCGTTGCTCCTCGCGAGGCCGCGGCGCCTCCATCGAACGCCGTCGTTTCGGCCGCCGTGGCGAAGGATTGGACCGGCTCGGTGACCGAGGATCGCCGCGACGATCAGCGCGTGCCTCCCAAGAAGATCGCCATGGCGTCCTTGGTTTCCGAACCTTCCGCCAAGAATGCCTCCGCCGCAGGCATCCCGATCATGGTTAGGCCTCAGTCAAGGCACCCCTTGGAACCTTTATCTCCTGCCGAAATATCTGTGGCAGTGGCGACTGTCAGGGCAGCTGGAGCAACACCTGAGGTTAGAGATAGTATGCGTTTTGTTGAAGTGGTTCTACTAGAACCAGATAAGCATGTTGTTGCATTAGCAGATGCTTACTTCTTCCCTCCTTTCCAACCCACATTACTTCCAAGAACCAAAGGTGGACCTATAATACCCAGTAAGCTTCCTCCGAGGCGAGCTAGACTTATTGTTTACAACAAGACGTCAAATGAGATAAGCACATGGATTGTTGAGCTGTCAGAAGTGCATGCAGCTACTCGTGGTGGACATCACAGAGGAAAAGTAATATCATCTCAAGTTATCCCTGATGTTCAGCCTCCAATGGATGCAGTGGAATATGCTGAATGTGAAGCTGTTGTGAAAGACTTTCCTCCATTTGGAGAGGCTATGAAGAAGAGGGGCATTGAAGATATGGACCTAGTGATGGTTGATGCCTGGTGTGTTGGTTATCATAGTGAGGCTGATGCTCCTAGCAAAAGGCTTGCTAAACCATTGATATTCTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGTTACGCGCGCCCTGTTGAGGGAATCCATATACTTGTTGATATGCAGAGCATGGTGGTGTTAGAGTTTGAAGACCGTAAGCTTGTACCCTTACCTCCAGCCGATCCATTGAGGAACTATACTTCTGGTGAAACAAGAGGTGGTGTTGATCGAAGTGATGTGAAGCCATTGAAAATTGTTCAGGCTGAAGGTCCAAGCTTTCGTGTGGATGGATACTTTGTGGAGTGGCAGAAGTGGAATTTCCGTGTTGGATTCACTCCCAGGGAGGGGCTAGTAATATATTCAATTGCATATGATGATGGTAGTAGGGGGCGAAGGCCTGTAGCCCATAGGTTGAGTTTTGTGGAAATGGTGGTGCCATATGGAGATCCCAATGATCCACATTACAGAAAAAATGCTTTTGACGCTGGGGAAGATGGCCTTGGTAAAAACGCGCATTCTCTAAAGAAGGGGTGTGACTGTTTGGGCTATATCAAATACTTTGATGCCCATTTTACAAACTTTACTGGAGGTGTTGAAACAATTGAGAATTGTGTATGTTTGCACGAAGAGGACCATGGAATGTTGTGGAAGCACCAGGACTGGAGAACAGGCTTAGCAGAAGTGCGCAGGTCGAGAAGGCTGACAGTGTCTTTTATATGTACTGTTGCTAATTATGAATACGGATTCTTCTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTTAAACTCACTGGAATACTCAGCTTAGGAGCACTACAGCCTGGAGAAGTTCGAAAATATGGTACTGTTATTGCACCAGGGTTATATGCACCAGTTCATCAGCACTTTTTTGTTGCTCGTATGGATATGGCTGTTGATTGCAAACCTGGGGAAGCATACAATCAGGTAGTGGAGCTAGATGTTAAAGTTGAAAAACCTGGAGAGAATAATGTCCACAGCAATGCATTTTATGCTGAAGAGAGACTTCTTAGAACTGAATTGGAGGCAATGCGAGACTGTAATCCCTTATCTGCCCGGCATTGGATTGTAAGAAATACACGAACTGTTAACAGGACCGGACAGTTAACAGGCTACAAGCTTGTACCTGGTTCAAATTGCCTGCCATTAGCTGGTCCTGAGGCCAAGTTTTTGAGAAGAGCTGCCTTCTTGAAACATAATCTTTGGGTTACACCATATTCACGTGATGAGATGTATCCTGGAGGAGAATTTCCCAACCAAAACCCACGGGTGGGTGAAGGATTGGCTACATGGGTTAAGAAGAATCGATCTCTTGAAGAAACTGATATTGTCCTTTGGTATGTATTTGGGATAACTCACATTCCTCGGTTAGAAGACTGGCCTGTCATGCCAGTGGAGCACCTTGGCTTTGTTCTCATGCCTCATGGATTCTTCAACTGCTGTCCTGCAGTGGATGTTCCTCCTAGTGCCTGTGAATCGGAAGTCAAAGAAGATGATGTCAAAGACAATGGGGTAGCCAAACCAATTCAGAATGGGTTGATGGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

790

Amino Acids

87.56

Weight (kDa)

6.25

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	218 - 321	1.2e-27	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	347 - 744	6.3e-149	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2198
AatII	GACGTC	1 cut(s)	542
Acc16I	TGCGCA	1 cut(s)	1478
Acc36I	ACCTGC	1 cut(s)	1470
AccB1I	GGYRCC	3 cut(s)	88, 276, 1225
AccB7I	CCANNNNNTGG	1 cut(s)	1967
AccII	CGCG	7 cut(s)	78, 86, 162, 174, 878, 880, 1304
AclWI	GGATC	4 cut(s)	162, 968, 1232, 1241
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	1108, 2063
AcuI	CTGAAG	3 cut(s)	1077, 1596, 1833
AcvI	CACGTG	1 cut(s)	2039
AcyI	GRCGYC	4 cut(s)	26, 89, 200, 539
AfaI	GTAC	4 cut(s)	957, 1513, 1642, 1941
AjnI	CCWGG	9 cut(s)	770, 1130, 1446, 1618, 1654, 1723, 1774, 1942, 2053
AjuI	GAANNNNNNNTTGG	2 cut(s)	1275, 1307
Alw21I	GWGCWC	2 cut(s)	1612, 2217
Alw26I	GTCTC	2 cut(s)	1813, 1845
AlwI	GGATC	4 cut(s)	162, 968, 1232, 1241
AoxI	GGCC	8 cut(s)	3, 81, 114, 263, 1187, 1288, 1977, 2195
ApeKI	GCWGC	3 cut(s)	335, 587, 1997
ApoI	RAATTY	2 cut(s)	1108, 2063
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	6 cut(s)	91, 174, 880, 882, 1306, 1479
AspS9I	GGNCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
AsuC2I	CCSGG	1 cut(s)	1873
AsuHPI	GGTGA	3 cut(s)	157, 1010, 2102
AsuII	TTCGAA	1 cut(s)	1630
AvaII	GGWCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
AxyI	CCTNAGG	2 cut(s)	351, 1974
BanI	GGYRCC	3 cut(s)	88, 276, 1225
BarI	GAAGNNNNNNTAC	2 cut(s)	372, 404
BauI	CACGAG	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	2039
BbsI	GAAGAC	2 cut(s)	948, 2196
Bbv12I	GWGCWC	2 cut(s)	1612, 2217
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	3 cut(s)	347, 599, 1984
BccI	CCATC	7 cut(s)	103, 754, 1073, 1163, 1280, 1553, 2350
BceAI	ACGGC	2 cut(s)	89, 104
BciT130I	CCWGG	9 cut(s)	772, 1132, 1448, 1620, 1656, 1725, 1776, 1944, 2055
BciVI	GTATCC	2 cut(s)	1076, 2061
BcnI	CCSGG	1 cut(s)	1873
BcoDI	GTCTC	2 cut(s)	1813, 1845
BfaI	CTAG	7 cut(s)	392, 516, 755, 807, 1142, 1754, 2280
BfmI	CTRYAG	4 cut(s)	838, 1191, 1613, 2262
BfoI	RGCGCY	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	1470
BfuI	GTATCC	2 cut(s)	1076, 2061
BglI	GCCNNNNNGGC	1 cut(s)	122
BlpI	GCTNAGC	1 cut(s)	1465
Bme18I	GGWCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
BmgT120I	GGNCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
BmiI	GGNNCC	4 cut(s)	90, 278, 288, 1227
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	6 cut(s)	255, 415, 652, 757, 790, 1345
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	948, 2196
BpmI	CTGGAG	7 cut(s)	360, 951, 1398, 1474, 1641, 1797, 2076
Bpu10I	CCTNAGC	2 cut(s)	7, 1603
Bpu1102I	GCTNAGC	1 cut(s)	1465
Bpu14I	TTCGAA	1 cut(s)	1630
BpuEI	CTTGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	1873
Bsa29I	ATCGAT	1 cut(s)	2122
BsaAI	YACGTR	1 cut(s)	2039
BsaHI	GRCGYC	4 cut(s)	26, 89, 200, 539
BsaWI	WCCGGW	1 cut(s)	1913
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	7 cut(s)	492, 1381, 1457, 1594, 1670, 2198, 2207
Bse21I	CCTNAGG	2 cut(s)	351, 1974
Bse3DI	GCAATG	2 cut(s)	1804, 1851
BseBI	CCWGG	9 cut(s)	772, 1132, 1448, 1620, 1656, 1725, 1776, 1944, 2055
BseCI	ATCGAT	1 cut(s)	2122
BseGI	GGATG	5 cut(s)	246, 667, 1084, 1564, 2275
BseMI	GCAATG	2 cut(s)	1804, 1851
BseMII	CTCAG	6 cut(s)	21, 281, 342, 837, 1612, 1965
BseNI	ACTGG	7 cut(s)	492, 1381, 1457, 1594, 1670, 2198, 2207
BsePI	GCGCGC	1 cut(s)	878
BseRI	GAGGAG	2 cut(s)	63, 2073
BseX3I	CGGCCG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	347, 599, 1984
BseYI	CCCAGC	1 cut(s)	1277
Bsh1236I	CGCG	7 cut(s)	78, 86, 162, 174, 878, 880, 1304
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	8 cut(s)	5, 83, 116, 265, 1189, 1290, 1979, 2197
BshNI	GGYRCC	3 cut(s)	88, 276, 1225
BshVI	ATCGAT	1 cut(s)	2122
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	1612, 2217
BsiSI	CCGG	3 cut(s)	138, 1873, 1914
BsmAI	GTCTC	2 cut(s)	1813, 1845
BsmI	GAATGC	2 cut(s)	235, 1306
BsnI	GGCC	8 cut(s)	5, 83, 116, 265, 1189, 1290, 1979, 2197
Bsp119I	TTCGAA	1 cut(s)	1630
Bsp1286I	GDGCHC	2 cut(s)	1612, 2217
Bsp143I	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
Bsp1720I	GCTNAGC	1 cut(s)	1465
Bsp19I	CCATGG	2 cut(s)	195, 1426
Bsp68I	TCGCGA	1 cut(s)	78
BspANI	GGCC	8 cut(s)	5, 83, 116, 265, 1189, 1290, 1979, 2197
BspCNI	CTCAG	6 cut(s)	20, 280, 343, 838, 1611, 1966
BspDI	ATCGAT	1 cut(s)	2122
BspFNI	CGCG	7 cut(s)	78, 86, 162, 174, 878, 880, 1304
BspLI	GGNNCC	4 cut(s)	90, 278, 288, 1227
BspMAI	CTGCAG	1 cut(s)	2266
BspMI	ACCTGC	1 cut(s)	1470
BspPI	GGATC	4 cut(s)	162, 968, 1232, 1241
BspQI	GCTCTTC	1 cut(s)	1987
BspT104I	TTCGAA	1 cut(s)	1630
BspT107I	GGYRCC	3 cut(s)	88, 276, 1225
BsrDI	GCAATG	2 cut(s)	1804, 1851
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	7 cut(s)	492, 1381, 1457, 1594, 1670, 2198, 2207
BssAI	RCCGGY	1 cut(s)	137
BssHII	GCGCGC	1 cut(s)	878
BssMI	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
BssNI	GRCGYC	4 cut(s)	26, 89, 200, 539
BssSI	CACGAG	1 cut(s)	594
BssT1I	CCWWGG	6 cut(s)	195, 204, 282, 1291, 1426, 2218
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	9 cut(s)	772, 1132, 1448, 1620, 1656, 1725, 1776, 1944, 2055
Bst4CI	ACNGT	9 cut(s)	328, 947, 1331, 1498, 1516, 1645, 1856, 1903, 1920
Bst6I	CTCTTC	4 cut(s)	725, 1413, 1809, 1987
BstACI	GRCGYC	4 cut(s)	26, 89, 200, 539
BstAPI	GCANNNNNTGC	1 cut(s)	1808
BstBAI	YACGTR	1 cut(s)	2039
BstBI	TTCGAA	1 cut(s)	1630
BstC8I	GCNNGC	7 cut(s)	176, 244, 513, 585, 819, 880, 1958
BstDEI	CTNAG	9 cut(s)	7, 267, 351, 846, 1465, 1598, 1603, 1826, 1974
BstDSI	CCRYGG	5 cut(s)	84, 120, 195, 1426, 2081
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	5 cut(s)	246, 667, 1084, 1564, 2275
BstFNI	CGCG	7 cut(s)	78, 86, 162, 174, 878, 880, 1304
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	6 cut(s)	91, 174, 880, 882, 1306, 1479
BstKTI	GATC	9 cut(s)	157, 169, 192, 255, 976, 1021, 1240, 1249, 2126
BstMAI	GTCTC	2 cut(s)	1813, 1845
BstMBI	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	9 cut(s)	51, 122, 230, 239, 341, 1274, 1808, 2203, 2212
BstNI	CCWGG	9 cut(s)	772, 1132, 1448, 1620, 1656, 1725, 1776, 1944, 2055
BstNSI	RCATGY	2 cut(s)	410, 587
BstPI	GGTNACC	1 cut(s)	145
BstSFI	CTRYAG	4 cut(s)	838, 1191, 1613, 2262
BstUI	CGCG	7 cut(s)	78, 86, 162, 174, 878, 880, 1304
BstV1I	GCAGC	3 cut(s)	347, 599, 1984
BstV2I	GAAGAC	2 cut(s)	948, 2196
BstX2I	RGATCY	1 cut(s)	1237
BstYI	RGATCY	1 cut(s)	1237
BstZI	CGGCCG	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	2122
Bsu36I	CCTNAGG	2 cut(s)	351, 1974
BsuI	GTATCC	2 cut(s)	1076, 2061
BsuRI	GGCC	8 cut(s)	5, 83, 116, 265, 1189, 1290, 1979, 2197
BsuTUI	ATCGAT	1 cut(s)	2122
BtgI	CCRYGG	5 cut(s)	84, 120, 195, 1426, 2081
BtsCI	GGATG	5 cut(s)	246, 667, 1084, 1564, 2275
BtsI	GCAGTG	3 cut(s)	324, 672, 2271
BtsIMutI	CAGTG	6 cut(s)	324, 672, 1503, 1587, 2214, 2271
BtuMI	TCGCGA	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	1470
Cac8I	GCNNGC	7 cut(s)	176, 244, 513, 585, 819, 880, 1958
CfoI	GCGC	6 cut(s)	91, 174, 880, 882, 1306, 1479
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
Cfr42I	CCGCGG	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	2122
CseI	GACGC	4 cut(s)	34, 65, 189, 1283
CsiI	ACCWGGT	1 cut(s)	1942
Csp6I	GTAC	4 cut(s)	956, 1512, 1641, 1940
CviQI	GTAC	4 cut(s)	956, 1512, 1641, 1940
DdeI	CTNAG	9 cut(s)	7, 267, 351, 846, 1465, 1598, 1603, 1826, 1974
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	9 cut(s)	156, 168, 191, 254, 975, 1020, 1239, 1248, 2125
DpnII	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
DrdI	GACNNNNNNGTC	1 cut(s)	2198
DseDI	GACNNNNNNGTC	1 cut(s)	2198
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	4 cut(s)	725, 1413, 1809, 1987
EarI	CTCTTC	4 cut(s)	725, 1413, 1809, 1987
EciI	GGCGGA	2 cut(s)	211, 226
EclXI	CGGCCG	1 cut(s)	114
Eco130I	CCWWGG	6 cut(s)	195, 204, 282, 1291, 1426, 2218
Eco147I	AGGCCT	2 cut(s)	265, 1189
Eco47I	GGWCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
Eco52I	CGGCCG	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	1077, 1596, 1833
Eco72I	CACGTG	1 cut(s)	2039
Eco81I	CCTNAGG	2 cut(s)	351, 1974
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoRII	CCWGG	9 cut(s)	770, 1130, 1446, 1618, 1654, 1723, 1774, 1942, 2053
EcoT14I	CCWWGG	6 cut(s)	195, 204, 282, 1291, 1426, 2218
EcoT22I	ATGCAT	1 cut(s)	1804
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	6 cut(s)	195, 204, 282, 1291, 1426, 2218
FalI	AAGNNNNNCTT	4 cut(s)	1275, 1307, 1806, 1838
FauNDI	CATATG	2 cut(s)	1162, 1231
FokI	GGATG	5 cut(s)	233, 674, 1091, 1571, 2282
FspBI	CTAG	7 cut(s)	392, 516, 755, 807, 1142, 1754, 2280
FspI	TGCGCA	1 cut(s)	1478
GlaI	GCGC	6 cut(s)	90, 173, 879, 881, 1305, 1478
GsaI	CCCAGC	1 cut(s)	1281
GsuI	CTGGAG	7 cut(s)	360, 951, 1398, 1474, 1641, 1797, 2076
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	8 cut(s)	5, 83, 116, 265, 1189, 1290, 1979, 2197
HapII	CCGG	3 cut(s)	138, 1873, 1914
HgaI	GACGC	4 cut(s)	34, 65, 189, 1283
HhaI	GCGC	6 cut(s)	91, 174, 880, 882, 1306, 1479
Hin1I	GRCGYC	4 cut(s)	26, 89, 200, 539
Hin6I	GCGC	6 cut(s)	89, 172, 878, 880, 1304, 1477
HinP1I	GCGC	6 cut(s)	89, 172, 878, 880, 1304, 1477
HincII	GTYRAC	2 cut(s)	1906, 1923
HindII	GTYRAC	2 cut(s)	1906, 1923
HindIII	AAGCTT	5 cut(s)	497, 950, 1066, 1934, 2363
HinfI	GANTC	6 cut(s)	894, 1122, 1536, 2119, 2244, 2291
HpaI	GTTAAC	2 cut(s)	1906, 1923
HpaII	CCGG	3 cut(s)	138, 1873, 1914
HphI	GGTGA	3 cut(s)	157, 1010, 2102
Hpy166II	GTNNAC	6 cut(s)	479, 529, 602, 1792, 1906, 1923
Hpy188I	TCNGA	5 cut(s)	214, 507, 577, 2296, 2346
Hpy188III	TCNNGA	7 cut(s)	77, 250, 1485, 1556, 1973, 2005, 2129
Hpy8I	GTNNAC	6 cut(s)	479, 529, 602, 1792, 1906, 1923
Hpy99I	CGWCG	4 cut(s)	28, 59, 110, 167
HpyAV	CCTTC	9 cut(s)	39, 121, 228, 1052, 1179, 1312, 1482, 2011, 2087
HpyCH4III	ACNGT	9 cut(s)	328, 947, 1331, 1498, 1516, 1645, 1856, 1903, 1920
HpyCH4IV	ACGT	2 cut(s)	539, 2038
HpyF10VI	GCNNNNNNNGC	9 cut(s)	51, 122, 230, 239, 341, 1274, 1808, 2203, 2212
HpyF3I	CTNAG	9 cut(s)	7, 267, 351, 846, 1465, 1598, 1603, 1826, 1974
HpySE526I	ACGT	2 cut(s)	539, 2038
Hsp92I	GRCGYC	4 cut(s)	26, 89, 200, 539
HspAI	GCGC	6 cut(s)	89, 172, 878, 880, 1304, 1477
KasI	GGCGCC	1 cut(s)	88
KspAI	GTTAAC	2 cut(s)	1906, 1923
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
LguI	GCTCTTC	1 cut(s)	1987
LmnI	GCTCC	6 cut(s)	76, 341, 808, 1607, 1750, 2212
Lsp1109I	GCAGC	3 cut(s)	347, 599, 1984
LweI	GCATC	6 cut(s)	255, 415, 652, 757, 790, 1345
MabI	ACCWGGT	1 cut(s)	1942
MaeI	CTAG	7 cut(s)	392, 516, 755, 807, 1142, 1754, 2280
MaeII	ACGT	2 cut(s)	539, 2038
MaeIII	GTNAC	5 cut(s)	145, 851, 872, 1325, 2023
MalI	GATC	9 cut(s)	156, 168, 191, 254, 975, 1020, 1239, 1248, 2125
MboI	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
MfeI	CAATTG	2 cut(s)	1155, 1392
MflI	RGATCY	1 cut(s)	1237
MhlI	GDGCHC	2 cut(s)	1612, 2217
Mly113I	GGCGCC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	472, 1099
Mph1103I	ATGCAT	1 cut(s)	1804
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	5 cut(s)	1581, 1761, 1905, 1922, 2112
MslI	CAYNNNNRTG	3 cut(s)	926, 1797, 2207
MspA1I	CMGCKG	2 cut(s)	86, 338
MspI	CCGG	3 cut(s)	138, 1873, 1914
MunI	CAATTG	2 cut(s)	1155, 1392
Mva1269I	GAATGC	2 cut(s)	235, 1306
MvaI	CCWGG	9 cut(s)	772, 1132, 1448, 1620, 1656, 1725, 1776, 1944, 2055
MvnI	CGCG	7 cut(s)	78, 86, 162, 174, 878, 880, 1304
MwoI	GCNNNNNNNGC	9 cut(s)	51, 122, 230, 239, 341, 1274, 1808, 2203, 2212
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	1873
NcoI	CCATGG	2 cut(s)	195, 1426
NdeI	CATATG	2 cut(s)	1162, 1231
NdeII	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
NlaIV	GGNNCC	4 cut(s)	90, 278, 288, 1227
NmuCI	GTSAC	3 cut(s)	145, 851, 1325
NruI	TCGCGA	1 cut(s)	78
NsbI	TGCGCA	1 cut(s)	1478
NsiI	ATGCAT	1 cut(s)	1804
NspI	RCATGY	2 cut(s)	410, 587
NspV	TTCGAA	1 cut(s)	1630
PaeI	GCATGC	1 cut(s)	587
PasI	CCCWGGG	1 cut(s)	1131
PauI	GCGCGC	1 cut(s)	878
PceI	AGGCCT	2 cut(s)	265, 1189
PciSI	GCTCTTC	1 cut(s)	1987
PcsI	WCGNNNNNNNCGW	3 cut(s)	20, 63, 171
PctI	GAATGC	2 cut(s)	235, 1306
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	6 cut(s)	894, 1122, 1536, 2119, 2244, 2291
PflFI	GACNNNGTC	1 cut(s)	1498
PflMI	CCANNNNNTGG	1 cut(s)	1967
PfoI	TCCNGGA	1 cut(s)	2053
PluTI	GGCGCC	1 cut(s)	92
PmaCI	CACGTG	1 cut(s)	2039
PmlI	CACGTG	1 cut(s)	2039
Ppu21I	YACGTR	1 cut(s)	2039
Psp6I	CCWGG	9 cut(s)	770, 1130, 1446, 1618, 1654, 1723, 1774, 1942, 2053
PspCI	CACGTG	1 cut(s)	2039
PspEI	GGTNACC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	1277
PspGI	CCWGG	9 cut(s)	770, 1130, 1446, 1618, 1654, 1723, 1774, 1942, 2053
PspN4I	GGNNCC	4 cut(s)	90, 278, 288, 1227
PspPI	GGNCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
PstI	CTGCAG	1 cut(s)	2266
PsuI	RGATCY	1 cut(s)	1237
PsyI	GACNNNGTC	1 cut(s)	1498
PteI	GCGCGC	1 cut(s)	878
PvuII	CAGCTG	1 cut(s)	338
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	4 cut(s)	957, 1513, 1642, 1941
RsaNI	GTAC	4 cut(s)	956, 1512, 1641, 1940
RseI	CAYNNNNRTG	3 cut(s)	926, 1797, 2207
SacII	CCGCGG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	1987
SaqAI	TTAA	5 cut(s)	1581, 1761, 1905, 1922, 2112
Sau3AI	GATC	9 cut(s)	154, 166, 189, 252, 973, 1018, 1237, 1246, 2123
Sau96I	GGNCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
SduI	GDGCHC	2 cut(s)	1612, 2217
SexAI	ACCWGGT	1 cut(s)	1942
SfaNI	GCATC	6 cut(s)	255, 415, 652, 757, 790, 1345
SfcI	CTRYAG	4 cut(s)	838, 1191, 1613, 2262
SfoI	GGCGCC	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	1630
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
SmiMI	CAYNNNNRTG	3 cut(s)	926, 1797, 2207
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
SphI	GCATGC	1 cut(s)	587
SseBI	AGGCCT	2 cut(s)	265, 1189
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	7 cut(s)	392, 516, 755, 807, 1142, 1754, 2280
StuI	AGGCCT	2 cut(s)	265, 1189
StyI	CCWWGG	6 cut(s)	195, 204, 282, 1291, 1426, 2218
TaaI	ACNGT	9 cut(s)	328, 947, 1331, 1498, 1516, 1645, 1856, 1903, 1920
TaiI	ACGT	2 cut(s)	542, 2041
TaqI	TCGA	5 cut(s)	98, 1021, 1484, 1630, 2122
TaqII	GACCGA	1 cut(s)	164
TatI	WGTACW	1 cut(s)	1511
TauI	GCSGC	8 cut(s)	48, 51, 54, 86, 89, 119, 162, 242
TfiI	GAWTC	6 cut(s)	894, 1122, 1536, 2119, 2244, 2291
Tru1I	TTAA	5 cut(s)	1581, 1761, 1905, 1922, 2112
Tru9I	TTAA	5 cut(s)	1581, 1761, 1905, 1922, 2112
TscAI	CASTG	6 cut(s)	324, 672, 1503, 1594, 2214, 2271
TseFI	GTSAC	3 cut(s)	145, 851, 1325
TseI	GCWGC	3 cut(s)	335, 587, 1997
Tsp45I	GTSAC	3 cut(s)	145, 851, 1325
TspDTI	ATGAA	4 cut(s)	27, 740, 1542, 1664
TspGWI	ACGGA	3 cut(s)	55, 1103, 1548
TspRI	CASTG	6 cut(s)	324, 672, 1503, 1594, 2214, 2271
Tth111I	GACNNNGTC	1 cut(s)	1498
Van91I	CCANNNNNTGG	1 cut(s)	1967
VpaK11BI	GGWCC	7 cut(s)	135, 479, 751, 1061, 1423, 1911, 1970
XapI	RAATTY	2 cut(s)	1108, 2063
XceI	RCATGY	2 cut(s)	410, 587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	7 cut(s)	392, 516, 755, 807, 1142, 1754, 2280
ZraI	GACGTC	1 cut(s)	540
Zsp2I	ATGCAT	1 cut(s)	1804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.