Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Forward (+)

11050408 .. 11055648

Gene Structure 5241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG131400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGCCCCAGCTTCGAAAAAAGCGACGCCTTCATGTTGCTCCGATTCTGCTTCTTCTTCTTCTTCCATCATTCCTCGCCAGGCCGCGGCGCCTCCTTCGAACGCCGTCGTTTCGGCCGCCGTGGCTCAGGATTGGAGCGTCGCGGCTACCGAGGACCGCCGCGACGATCAGCGCTCCAAGAAGATCGCCATGGCGTCCTTGATTCCTGAACCTTCCGCCAAGAATGCCTCCGCCGCAGGCATCCCGATCATGCTTAGGCCTCAATCAAGGCATCCATTGGAACCTTTATCTGCTGCCGAAATTTCTGTGGCAGTGGCGACCGTCAGGGCTGCTGGAGCAACTCCTGAGGTTAGAGATAGTATGCGTTTTGTTGAAGTGGTTCTTCTAGAACCAGAAAAACATGTCGTTGCATTAGCGGATGCATACTTCTTCCCTCCTTTCCAACCCTCATTACTTCCAAGAACCAAAGGTGGACCTATAATACCCACTAAGCTTCCTCCGAGGCGAGCTAGACTTGTTGTTTACAACAAGAAGTCAAATGAGACAAGCACATGGATTGTTGAGCTGTCAGAAGTACATGCAGCTACTCGTGGTGGGCATCACAGAGGAAAAGTAATATCATCACAAGTTATCCCTGATGTTCAGCCCCCCATGGATGCTGTGGAATACGCTGAATGTGAAGCTGTTGTGAAAGACTTTCCTCCATTTAGAGACGCTATGAAGAAGAGGGGTGTTGAAGATATGGATCTTGTGATGGTTGATGCCTGGTGTGTTGGTTATCATAGTGAGGCTGATGCTCCTAGCAAAAGACTTGCTAAACCACTGATATTCTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGTTATGCACGCCCTGTTGAGGGAATCCATATACTTGTTGATATGCAAAGCATGGCGGTGATAGAGTTTGAAGACCGTAAGCTGGTTCCCCTACCTCCAGCCGATCCATTGAGGAACTATACTTCTGGTGAAACAAGAGGTGGTGTTGATCGGAGTGATGTGAAGCCTTTACAAATTGTTCAGGCTGAAGGTCCAAGCTTTCGTGTTGATGGATATTTTGTGGAGTGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCCAGGGAGGGGCTAGTTATATATTCAATTGCGTATGTTGATGGTAGTCGGGGACGAAGGCCTGTAGCCCATAGGTTGAGTTTTGTGGAAATGGTGGTGCCATATGGAGATCCCAATGATCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCCTTGGTAAAAATGCACATTCCCTAAAGAAGGGGTGTGATTGTTTGGGCTATATCAAATACTTTGATGCCCATTTTACAAACTTTACTGGAGGTGTTGAGACAATTGAGAATTGTGTATGTTTGCACGAAGAGGACCATGGACTTCTGTGGAAGCACCAGGACTGGAGAACAGGTTTAGCAGAAGTGCGCAGGTCAAGACGGCTGACAGTTTCTTTTATATGTACTGTGGCTAATTATGAATACGGATTCTTCTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTTAAACTTACTGGAATACTCAGCTTAGGAGCACTACAACCTGGAGAAGTCCGAAAATATGGTACTGTTATTGCACCGGGGCTATATGCACCAGTTCATCAGCACTTTTTTGTTGCTCGTATGGATATGGCTGTTGATTGCAAACCTGGGGAAACATACAATCAGGTTGTGGAGCTAGATGTTAAAGTTGAACAACCTGGAGACAATAATGTCCACAGCAATGCATTTTATGCTGAAGAGAGACTTCTTAGAACTGAATCGGAGGCAATGCGAGACTGTAATCCCCTGTCCGCCCGCCATTGGATTGTAAGGAACACACGAACTGTTAACAGAACTGGACAATTAACAGGCTACAAGCTTGTACCTGGTTCAAATTGTTTGCCATTGGCTGGTTCTGAGGCCAAGTTTTTGAGAAGAGCTGCTTTCTTGAAACATAATCTTTGGGTTACACCATATGCACGTGATGAGATGTTTCCTGGAGGAGAATTTCCCAACCAAAACCCAAGGGTCGGTGAAGGATTGGCTACATGGGTTAAGCAGAATCGATCTCTTGAAGAAACTGACATTGTCCTTTGGTACGTATTTGGGATAACTCACGTTCCTCGGTTAGAAGACTGGCCTGTCATGCCAGTGGAGCGCATTGGCTTTGTGCTTATGCCTCATGGATTCTTCAACTGCTCTCCTGCAGTGGATGTTCCGCCCAGTGTCTGTGAATTGGAAGTCAAAGAAAATGACGTCAAAGACAATGGGGTTGCAAAGCCAATTCAGACTGGGTTGATGGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

787

Amino Acids

87.52

Weight (kDa)

6.45

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	216 - 319	8.6e-28	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	345 - 753	9.5e-153	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1781, 2192
AatII	GACGTC	1 cut(s)	2310
Acc16I	TGCGCA	1 cut(s)	1472
Acc36I	ACCTGC	1 cut(s)	1464
AccB1I	GGYRCC	2 cut(s)	88, 1219
AccB7I	CCANNNNNTGG	1 cut(s)	1961
AccII	CGCG	3 cut(s)	86, 143, 162
AclWI	GGATC	4 cut(s)	753, 962, 1226, 1235
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	300, 1102, 2057
AcuI	CTGAAG	3 cut(s)	1071, 1590, 1827
AcvI	CACGTG	1 cut(s)	2033
AcyI	GRCGYC	4 cut(s)	26, 89, 194, 2307
AfaI	GTAC	5 cut(s)	576, 1507, 1636, 1935, 2150
AfeI	AGCGCT	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	400
AjnI	CCWGG	9 cut(s)	78, 764, 1124, 1440, 1612, 1717, 1768, 1936, 2047
AjuI	GAANNNNNNNTTGG	2 cut(s)	1269, 1301
Alw21I	GWGCWC	1 cut(s)	1606
Alw26I	GTCTC	6 cut(s)	536, 705, 1376, 1767, 1807, 1839
AlwI	GGATC	4 cut(s)	753, 962, 1226, 1235
AlwNI	CAGNNNCTG	1 cut(s)	2280
Aor51HI	AGCGCT	1 cut(s)	173
AoxI	GGCC	8 cut(s)	3, 81, 114, 257, 1181, 1282, 1971, 2189
ApeKI	GCWGC	4 cut(s)	293, 329, 581, 1991
ApoI	RAATTY	3 cut(s)	300, 1102, 2057
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	4 cut(s)	91, 174, 1473, 2211
AspS9I	GGNCC	5 cut(s)	4, 154, 473, 1055, 1417
AsuC2I	CCSGG	1 cut(s)	1650
AsuHPI	GGTGA	3 cut(s)	934, 1004, 2096
AsuII	TTCGAA	2 cut(s)	14, 98
AvaII	GGWCC	4 cut(s)	154, 473, 1055, 1417
AxyI	CCTNAGG	1 cut(s)	345
BanI	GGYRCC	2 cut(s)	88, 1219
BauI	CACGAG	1 cut(s)	588
BbrPI	CACGTG	1 cut(s)	2033
BbsI	GAAGAC	2 cut(s)	942, 2190
Bbv12I	GWGCWC	1 cut(s)	1606
BbvI	GCAGC	4 cut(s)	280, 316, 593, 1978
BccI	CCATC	7 cut(s)	74, 748, 1067, 1157, 1274, 1547, 2344
BceAI	ACGGC	3 cut(s)	89, 104, 1499
BciT130I	CCWGG	9 cut(s)	80, 766, 1126, 1442, 1614, 1719, 1770, 1938, 2049
BcnI	CCSGG	1 cut(s)	1650
BcoDI	GTCTC	6 cut(s)	536, 705, 1376, 1767, 1807, 1839
BfaI	CTAG	5 cut(s)	386, 510, 801, 1136, 1748
BfmI	CTRYAG	3 cut(s)	832, 1185, 2256
BfoI	RGCGCY	2 cut(s)	92, 175
BfuAI	ACCTGC	1 cut(s)	1464
BglI	GCCNNNNNGGC	1 cut(s)	122
Bme18I	GGWCC	4 cut(s)	154, 473, 1055, 1417
BmgT120I	GGNCC	5 cut(s)	4, 154, 473, 1055, 1417
BmiI	GGNNCC	5 cut(s)	6, 90, 282, 951, 1221
BmrI	ACTGGG	2 cut(s)	2268, 2352
BmsI	GCATC	9 cut(s)	249, 280, 409, 607, 646, 751, 784, 1258, 1339
BmuI	ACTGGG	2 cut(s)	2268, 2352
BpiI	GAAGAC	2 cut(s)	942, 2190
BpmI	CTGGAG	7 cut(s)	354, 945, 1392, 1468, 1635, 1791, 2070
Bpu10I	CCTNAGC	3 cut(s)	126, 254, 1597
Bpu14I	TTCGAA	2 cut(s)	14, 98
BpuMI	CCSGG	1 cut(s)	1650
Bsa29I	ATCGAT	1 cut(s)	2116
BsaAI	YACGTR	2 cut(s)	2033, 2152
BsaBI	GATNNNNATC	1 cut(s)	744
BsaHI	GRCGYC	4 cut(s)	26, 89, 194, 2307
BsaXI	ACNNNNNCTCC	2 cut(s)	1441, 1471
Bse1I	ACTGG	9 cut(s)	1375, 1451, 1588, 1664, 1912, 2192, 2201, 2274, 2347
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	1798, 1845
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	9 cut(s)	80, 766, 1126, 1442, 1614, 1719, 1770, 1938, 2049
BseCI	ATCGAT	1 cut(s)	2116
BseGI	GGATG	6 cut(s)	240, 271, 424, 661, 1558, 2269
BseJI	GATNNNNATC	1 cut(s)	744
BseMI	GCAATG	2 cut(s)	1798, 1845
BseMII	CTCAG	5 cut(s)	140, 336, 831, 1606, 1959
BseNI	ACTGG	9 cut(s)	1375, 1451, 1588, 1664, 1912, 2192, 2201, 2274, 2347
BseRI	GAGGAG	1 cut(s)	2067
BseX3I	CGGCCG	1 cut(s)	114
BseXI	GCAGC	4 cut(s)	280, 316, 593, 1978
BseYI	CCCAGC	2 cut(s)	7, 1271
Bsh1236I	CGCG	3 cut(s)	86, 143, 162
Bsh1285I	CGRYCG	2 cut(s)	117, 321
BshFI	GGCC	8 cut(s)	5, 83, 116, 259, 1183, 1284, 1973, 2191
BshNI	GGYRCC	2 cut(s)	88, 1219
BshVI	ATCGAT	1 cut(s)	2116
BsiEI	CGRYCG	2 cut(s)	117, 321
BsiHKAI	GWGCWC	1 cut(s)	1606
BsiSI	CCGG	1 cut(s)	1649
BslFI	GGGAC	1 cut(s)	1188
BsmAI	GTCTC	6 cut(s)	536, 705, 1376, 1767, 1807, 1839
BsmBI	CGTCTC	1 cut(s)	705
BsmFI	GGGAC	1 cut(s)	1188
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	8 cut(s)	5, 83, 116, 259, 1183, 1284, 1973, 2191
Bsp119I	TTCGAA	2 cut(s)	14, 98
Bsp1286I	GDGCHC	1 cut(s)	1606
Bsp143I	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
Bsp19I	CCATGG	3 cut(s)	189, 651, 1420
BspANI	GGCC	8 cut(s)	5, 83, 116, 259, 1183, 1284, 1973, 2191
BspCNI	CTCAG	5 cut(s)	139, 337, 832, 1605, 1960
BspDI	ATCGAT	1 cut(s)	2116
BspFNI	CGCG	3 cut(s)	86, 143, 162
BspLI	GGNNCC	5 cut(s)	6, 90, 282, 951, 1221
BspMAI	CTGCAG	1 cut(s)	2260
BspMI	ACCTGC	1 cut(s)	1464
BspPI	GGATC	4 cut(s)	753, 962, 1226, 1235
BspQI	GCTCTTC	1 cut(s)	1981
BspT104I	TTCGAA	2 cut(s)	14, 98
BspT107I	GGYRCC	2 cut(s)	88, 1219
BsrDI	GCAATG	2 cut(s)	1798, 1845
BsrI	ACTGG	9 cut(s)	1375, 1451, 1588, 1664, 1912, 2192, 2201, 2274, 2347
BssMI	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
BssNI	GRCGYC	4 cut(s)	26, 89, 194, 2307
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	5 cut(s)	189, 651, 1285, 1420, 2075
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	9 cut(s)	80, 766, 1126, 1442, 1614, 1719, 1770, 1938, 2049
Bst4CI	ACNGT	7 cut(s)	322, 941, 1492, 1510, 1639, 1850, 1897
Bst6I	CTCTTC	4 cut(s)	719, 1407, 1803, 1981
BstACI	GRCGYC	4 cut(s)	26, 89, 194, 2307
BstAPI	GCANNNNNTGC	1 cut(s)	1802
BstBAI	YACGTR	2 cut(s)	2033, 2152
BstBI	TTCGAA	2 cut(s)	14, 98
BstC8I	GCNNGC	4 cut(s)	238, 507, 874, 1867
BstDEI	CTNAG	9 cut(s)	126, 254, 345, 489, 840, 1592, 1597, 1820, 1968
BstDSI	CCRYGG	5 cut(s)	84, 120, 189, 651, 1420
BstENI	CCTNNNNNAGG	1 cut(s)	1310
BstF5I	GGATG	6 cut(s)	240, 271, 424, 661, 1558, 2269
BstFNI	CGCG	3 cut(s)	86, 143, 162
BstH2I	RGCGCY	2 cut(s)	92, 175
BstHHI	GCGC	4 cut(s)	91, 174, 1473, 2211
BstKTI	GATC	9 cut(s)	169, 186, 249, 748, 970, 1015, 1234, 1243, 2120
BstMAI	GTCTC	6 cut(s)	536, 705, 1376, 1767, 1807, 1839
BstMBI	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
BstMCI	CGRYCG	2 cut(s)	117, 321
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 224, 233, 335, 1268, 1802, 2197, 2206
BstNI	CCWGG	9 cut(s)	80, 766, 1126, 1442, 1614, 1719, 1770, 1938, 2049
BstNSI	RCATGY	2 cut(s)	404, 581
BstSFI	CTRYAG	3 cut(s)	832, 1185, 2256
BstSNI	TACGTA	1 cut(s)	2152
BstUI	CGCG	3 cut(s)	86, 143, 162
BstV1I	GCAGC	4 cut(s)	280, 316, 593, 1978
BstV2I	GAAGAC	2 cut(s)	942, 2190
BstX2I	RGATCY	2 cut(s)	745, 1231
BstYI	RGATCY	2 cut(s)	745, 1231
BstZI	CGGCCG	1 cut(s)	114
Bsu15I	ATCGAT	1 cut(s)	2116
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	8 cut(s)	5, 83, 116, 259, 1183, 1284, 1973, 2191
BsuTUI	ATCGAT	1 cut(s)	2116
BtgI	CCRYGG	5 cut(s)	84, 120, 189, 651, 1420
BtsCI	GGATG	6 cut(s)	240, 271, 424, 661, 1558, 2269
BtsI	GCAGTG	2 cut(s)	318, 2265
BtsIMutI	CAGTG	5 cut(s)	318, 821, 2208, 2265, 2281
BveI	ACCTGC	1 cut(s)	1464
Cac8I	GCNNGC	4 cut(s)	238, 507, 874, 1867
CaiI	CAGNNNCTG	1 cut(s)	2280
CfoI	GCGC	4 cut(s)	91, 174, 1473, 2211
Cfr13I	GGNCC	5 cut(s)	4, 154, 473, 1055, 1417
Cfr42I	CCGCGG	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	2116
CseI	GACGC	4 cut(s)	34, 127, 183, 722
CsiI	ACCWGGT	1 cut(s)	1936
Csp6I	GTAC	5 cut(s)	575, 1506, 1635, 1934, 2149
CviQI	GTAC	5 cut(s)	575, 1506, 1635, 1934, 2149
DdeI	CTNAG	9 cut(s)	126, 254, 345, 489, 840, 1592, 1597, 1820, 1968
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	9 cut(s)	168, 185, 248, 747, 969, 1014, 1233, 1242, 2119
DpnII	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
DrdI	GACNNNNNNGTC	2 cut(s)	1781, 2192
DseDI	GACNNNNNNGTC	2 cut(s)	1781, 2192
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	4 cut(s)	719, 1407, 1803, 1981
EarI	CTCTTC	4 cut(s)	719, 1407, 1803, 1981
EciI	GGCGGA	4 cut(s)	205, 220, 1852, 2259
EclXI	CGGCCG	1 cut(s)	114
Eco105I	TACGTA	1 cut(s)	2152
Eco130I	CCWWGG	5 cut(s)	189, 651, 1285, 1420, 2075
Eco147I	AGGCCT	2 cut(s)	259, 1183
Eco47I	GGWCC	4 cut(s)	154, 473, 1055, 1417
Eco47III	AGCGCT	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	1071, 1590, 1827
Eco72I	CACGTG	1 cut(s)	2033
Eco81I	CCTNAGG	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	1310
EcoRII	CCWGG	9 cut(s)	78, 764, 1124, 1440, 1612, 1717, 1768, 1936, 2047
EcoT14I	CCWWGG	5 cut(s)	189, 651, 1285, 1420, 2075
EcoT22I	ATGCAT	2 cut(s)	424, 1798
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	5 cut(s)	189, 651, 1285, 1420, 2075
Esp3I	CGTCTC	1 cut(s)	705
FaqI	GGGAC	1 cut(s)	1188
FauI	CCCGC	1 cut(s)	1874
FauNDI	CATATG	2 cut(s)	1225, 2026
FokI	GGATG	6 cut(s)	227, 258, 431, 668, 1565, 2276
FspBI	CTAG	5 cut(s)	386, 510, 801, 1136, 1748
FspI	TGCGCA	1 cut(s)	1472
GlaI	GCGC	4 cut(s)	90, 173, 1472, 2210
GsaI	CCCAGC	2 cut(s)	11, 1275
GsuI	CTGGAG	7 cut(s)	354, 945, 1392, 1468, 1635, 1791, 2070
HaeII	RGCGCY	2 cut(s)	92, 175
HaeIII	GGCC	8 cut(s)	5, 83, 116, 259, 1183, 1284, 1973, 2191
HapII	CCGG	1 cut(s)	1649
HgaI	GACGC	4 cut(s)	34, 127, 183, 722
HhaI	GCGC	4 cut(s)	91, 174, 1473, 2211
Hin1I	GRCGYC	4 cut(s)	26, 89, 194, 2307
Hin6I	GCGC	4 cut(s)	89, 172, 1471, 2209
HinP1I	GCGC	4 cut(s)	89, 172, 1471, 2209
HincII	GTYRAC	1 cut(s)	1900
HindII	GTYRAC	1 cut(s)	1900
HindIII	AAGCTT	4 cut(s)	491, 1060, 1928, 2357
HinfI	GANTC	8 cut(s)	44, 202, 888, 1116, 1530, 1829, 2113, 2238
HpaI	GTTAAC	1 cut(s)	1900
HpaII	CCGG	1 cut(s)	1649
HphI	GGTGA	3 cut(s)	934, 1004, 2096
Hpy166II	GTNNAC	4 cut(s)	473, 523, 1786, 1900
Hpy188I	TCNGA	8 cut(s)	43, 501, 571, 1017, 1625, 1834, 1969, 2340
Hpy188III	TCNNGA	9 cut(s)	128, 206, 244, 344, 386, 1479, 1550, 1999, 2123
Hpy8I	GTNNAC	4 cut(s)	473, 523, 1786, 1900
Hpy99I	CGWCG	4 cut(s)	28, 110, 143, 167
HpyAV	CCTTC	7 cut(s)	39, 105, 222, 1046, 1173, 1306, 2081
HpyCH4III	ACNGT	7 cut(s)	322, 941, 1492, 1510, 1639, 1850, 1897
HpyCH4IV	ACGT	4 cut(s)	2032, 2151, 2169, 2307
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 224, 233, 335, 1268, 1802, 2197, 2206
HpyF3I	CTNAG	9 cut(s)	126, 254, 345, 489, 840, 1592, 1597, 1820, 1968
HpySE526I	ACGT	4 cut(s)	2032, 2151, 2169, 2307
Hsp92I	GRCGYC	4 cut(s)	26, 89, 194, 2307
HspAI	GCGC	4 cut(s)	89, 172, 1471, 2209
KasI	GGCGCC	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	1900
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
LguI	GCTCTTC	1 cut(s)	1981
LmnI	GCTCC	8 cut(s)	44, 135, 179, 335, 802, 1601, 1744, 2206
Lsp1109I	GCAGC	4 cut(s)	280, 316, 593, 1978
LweI	GCATC	9 cut(s)	249, 280, 409, 607, 646, 751, 784, 1258, 1339
MabI	ACCWGGT	1 cut(s)	1936
MaeI	CTAG	5 cut(s)	386, 510, 801, 1136, 1748
MaeII	ACGT	4 cut(s)	2032, 2151, 2169, 2307
MaeIII	GTNAC	2 cut(s)	845, 2017
MalI	GATC	9 cut(s)	168, 185, 248, 747, 969, 1014, 1233, 1242, 2119
MboI	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
MfeI	CAATTG	2 cut(s)	1149, 1386
MflI	RGATCY	2 cut(s)	745, 1231
MhlI	GDGCHC	1 cut(s)	1606
Mly113I	GGCGCC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	466
Mph1103I	ATGCAT	2 cut(s)	424, 1798
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	5 cut(s)	1575, 1755, 1899, 1916, 2106
MslI	CAYNNNNRTG	3 cut(s)	920, 1791, 2201
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	1649
MunI	CAATTG	2 cut(s)	1149, 1386
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	9 cut(s)	80, 766, 1126, 1442, 1614, 1719, 1770, 1938, 2049
MvnI	CGCG	3 cut(s)	86, 143, 162
MwoI	GCNNNNNNNGC	8 cut(s)	122, 224, 233, 335, 1268, 1802, 2197, 2206
NarI	GGCGCC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	1650
NcoI	CCATGG	3 cut(s)	189, 651, 1420
NdeI	CATATG	2 cut(s)	1225, 2026
NdeII	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
NlaIV	GGNNCC	5 cut(s)	6, 90, 282, 951, 1221
NmuCI	GTSAC	1 cut(s)	845
NsbI	TGCGCA	1 cut(s)	1472
NsiI	ATGCAT	2 cut(s)	424, 1798
NspI	RCATGY	2 cut(s)	404, 581
NspV	TTCGAA	2 cut(s)	14, 98
PasI	CCCWGGG	1 cut(s)	1125
PceI	AGGCCT	2 cut(s)	259, 1183
PciI	ACATGT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	1981
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 147
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	8 cut(s)	44, 202, 888, 1116, 1530, 1829, 2113, 2238
PflFI	GACNNNGTC	1 cut(s)	2138
PflMI	CCANNNNNTGG	1 cut(s)	1961
PfoI	TCCNGGA	1 cut(s)	2047
PluTI	GGCGCC	1 cut(s)	92
PmaCI	CACGTG	1 cut(s)	2033
PmlI	CACGTG	1 cut(s)	2033
Ppu21I	YACGTR	2 cut(s)	2033, 2152
PscI	ACATGT	1 cut(s)	400
Psp6I	CCWGG	9 cut(s)	78, 764, 1124, 1440, 1612, 1717, 1768, 1936, 2047
PspCI	CACGTG	1 cut(s)	2033
PspFI	CCCAGC	2 cut(s)	7, 1271
PspGI	CCWGG	9 cut(s)	78, 764, 1124, 1440, 1612, 1717, 1768, 1936, 2047
PspN4I	GGNNCC	5 cut(s)	6, 90, 282, 951, 1221
PspPI	GGNCC	5 cut(s)	4, 154, 473, 1055, 1417
PstI	CTGCAG	1 cut(s)	2260
PstNI	CAGNNNCTG	1 cut(s)	2280
PsuI	RGATCY	2 cut(s)	745, 1231
PsyI	GACNNNGTC	1 cut(s)	2138
RsaI	GTAC	5 cut(s)	576, 1507, 1636, 1935, 2150
RsaNI	GTAC	5 cut(s)	575, 1506, 1635, 1934, 2149
RseI	CAYNNNNRTG	3 cut(s)	920, 1791, 2201
SacII	CCGCGG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	1981
SaqAI	TTAA	5 cut(s)	1575, 1755, 1899, 1916, 2106
Sau3AI	GATC	9 cut(s)	166, 183, 246, 745, 967, 1012, 1231, 1240, 2117
Sau96I	GGNCC	5 cut(s)	4, 154, 473, 1055, 1417
SduI	GDGCHC	1 cut(s)	1606
SexAI	ACCWGGT	1 cut(s)	1936
SfaNI	GCATC	9 cut(s)	249, 280, 409, 607, 646, 751, 784, 1258, 1339
SfcI	CTRYAG	3 cut(s)	832, 1185, 2256
SfoI	GGCGCC	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	87
SfuI	TTCGAA	2 cut(s)	14, 98
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	4 cut(s)	154, 473, 1055, 1417
SmiMI	CAYNNNNRTG	3 cut(s)	920, 1791, 2201
SnaBI	TACGTA	1 cut(s)	2152
SseBI	AGGCCT	2 cut(s)	259, 1183
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	5 cut(s)	386, 510, 801, 1136, 1748
StuI	AGGCCT	2 cut(s)	259, 1183
StyI	CCWWGG	5 cut(s)	189, 651, 1285, 1420, 2075
TaaI	ACNGT	7 cut(s)	322, 941, 1492, 1510, 1639, 1850, 1897
TaiI	ACGT	4 cut(s)	2035, 2154, 2172, 2310
TaqI	TCGA	3 cut(s)	14, 98, 2116
TatI	WGTACW	2 cut(s)	574, 1505
TauI	GCSGC	6 cut(s)	86, 89, 119, 146, 162, 236
TfiI	GAWTC	8 cut(s)	44, 202, 888, 1116, 1530, 1829, 2113, 2238
Tru1I	TTAA	5 cut(s)	1575, 1755, 1899, 1916, 2106
Tru9I	TTAA	5 cut(s)	1575, 1755, 1899, 1916, 2106
TscAI	CASTG	5 cut(s)	318, 828, 2208, 2265, 2281
TseFI	GTSAC	1 cut(s)	845
TseI	GCWGC	4 cut(s)	293, 329, 581, 1991
Tsp45I	GTSAC	1 cut(s)	845
TspDTI	ATGAA	4 cut(s)	21, 734, 1536, 1658
TspGWI	ACGGA	1 cut(s)	1542
TspRI	CASTG	5 cut(s)	318, 828, 2208, 2265, 2281
Tth111I	GACNNNGTC	1 cut(s)	2138
Van91I	CCANNNNNTGG	1 cut(s)	1961
VpaK11BI	GGWCC	4 cut(s)	154, 473, 1055, 1417
XagI	CCTNNNNNAGG	1 cut(s)	1310
XapI	RAATTY	3 cut(s)	300, 1102, 2057
XbaI	TCTAGA	1 cut(s)	385
XceI	RCATGY	2 cut(s)	404, 581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	5 cut(s)	386, 510, 801, 1136, 1748
ZraI	GACGTC	1 cut(s)	2308
Zsp2I	ATGCAT	2 cut(s)	424, 1798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.