Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Reverse (-)

49085693 .. 49091462

Gene Structure 5770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG325500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2307 bp

ATGGCCCCAACTCAGGAAAAAGCGACGCCTCCATGTTGCCCGAGCCCTCCACCTCTATCCTCCAAACCCATTCTCCAGCTTCGAACCGCCTCCTCCGATCCGGCCCAGGATCCGATCTCAACCCGACCCTCCGTCCCGCCGCCCCTCATCCGACCCCTCGACACCACCTCAGCCAACACCGCTGCCGCCAAAGGCCTCCCAGTCATGTTGAGGGCTCAATCCAGCCATCCCTTGGAGCCTTTATCTGCCGCTGAAATCTCGGTAGCCGTGGCCACTGTCAGGGCAGCTGGAGCAACCCCTGAGGTGAGGGATAGTATGCGCTTTGTTGAAGTAGCTTTGGTAGAACCAGATAAGCGTGTTGTTGCATTGGCAGATGCGTATTTCTTCCCTCCTTTCCAGCCATCATTGCTTCCCAGAACAAAAGGAGGACCTATGATTCCTAGTAAACTTCCTCCGAGGCAAGCGAGGCTTGTAGTTTATAACAAAAAGTCAAATGAGACGAGTGTTTGGGTTGTTGAGCTATCGGAAGTTCATGCTGCAACTCGAGGTGGTCACCATAGGGGTAAAGTCATCTCATCCAAAGTTGTTCCAGATGTTCAGCCTCCCATGGATGCTATGGAATATGCTGAATGTGAAGCTGTTGTAAAGGACTATCCTCTGTTTCGGGATGCAATGAAGAAGAGGGGTATTGAAGATTTGGACCTCGTAATGGTGGATCCATGGTGCGCAGGATATCACAGTGAGGCTGATGCTCCTAGCCGCAGGCTTGCTAAACCACTTATCTTCTGTAGAACTGAGAGTGATTGCCCTATGGAAAATGGTTATGCACGTCCAGTGGAAGGAATCCATGTACTAGTTGATATGCAAAATATGGTTGTTCTGGAGTTTGAAGACCGTAAACTTGTTCCCCTGCCTCCTGCTGATCCTTTGAGAAATTATACTCCTGGTGAAACACGAGGAGGTGTTGATCGAAGTGATGTGAAACCCCTAAAGATAGTTCAGCCTGAAGGGCCAAGTTTTCGTGTTAATGGGCACTTTGTTGAATGGCAGAAGTGGAATTTCCGTATTGGCTTTACTTCGAGGGAAGGTTTGGTTATCTACTCTGTTGCTTATATTGACGGTAGTCGAGGCCGGAGGCCTGTGGCCCACAGGTTAAGTTTTGTTGAGATGGTGGTTCCTTATGGAGATCCAAATGATCCCCACTACAGGAAAAATGCATTTGATGCTGGGGAAGATGGGCTGGGTAAAAATGCACATTCTCTTAAAAAGGGTTGTGATTGTTTAGGTTATATCAAGTACTTTGATGCACACTTTACAAATTTCACTGGGGGTGTTGAAACAATTGAGAATTGTGTTTGCTTGCATGAGGAGGATCATGGAATATTATGGAAGCATCAGGATTGGAGAACAGGTTTAGCAGAAGTTCGACGGTCTAGAAGGCTGACAGTGTCTTTTATCTGTACAGTAGCTAACTATGAGTACGGATTTTACTGGCATTTTTATCAGGATGGGAAAATTGAAGCTGAGGTGAGACTTACAGGAATTCTAAGCTTAGGTGCGCTTCAACCAGGAGAAACCCGAAAGTATGGTACAACTATTGCACCTGGACTATATGCTCCTGTACATCAACACTTTTTTGTTGCTCGTATGGACATGGCAGTTGATAGTAAGCCTGGTGAAACTTTTAATCAGGTGGTTGAAGTAAATGTTAAAGTTGAAGAACCAGGAAAGAACAATGTTCATAACAATGCATTCTATGCTGAGGAGAAACTTCTGAAATCAGAATTGCAAGCAATGCGTGATTGTAATCCTTTATCTGCTCGCCATTGGATTGTTAGGCACACAAGAAATGTCAACCGGACAGGACAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCTGGTTCTGAGGCAAAGTTTCTGAGAAGAGCTGCTTTTTTGAAGCATAATCTTTGGGTCACGTCTTATGCACGTGATGAAATGTATCCTGGAGGAGAATTTCCTAATCAAAATCCACGTATTGGGGAGGGATTAGCCACTTGGGTTCAGCAAGATCGGTCTCTGGAAGAAGCTGACATTGTTCTTTGGTATGTATTTGGAGTGACCCACATTCCTCGACTGGAAGACTGGCCGGTCATGCCTGTGGAACATATTGGTTTTACGCTCATGCCACATGGTTTCTTTAACTGCTCAACGGCAGTGGACGTCCCTCCGAATACATGTGAGATGGACCTCAAGGAAAATGAGATGGCTGCAAAACCTATTCAGAACGGTCTTATAGCAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

768

Amino Acids

85.75

Weight (kDa)

6.68

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	201 - 304	1.7e-27	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	330 - 737	8e-154	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AasI	GACNNNNNNGTC	1 cut(s)	2147
AatII	GACGTC	1 cut(s)	2223
Acc16I	TGCGCA	1 cut(s)	727
Acc65I	GGTACC	1 cut(s)	1888
AccB1I	GGYRCC	1 cut(s)	1888
AccB7I	CCANNNNNTGG	3 cut(s)	232, 1916, 2036
AciI	CCGC	7 cut(s)	87, 137, 140, 180, 186, 249, 760
AclWI	GGATC	9 cut(s)	92, 104, 117, 710, 723, 917, 1181, 1190, 1380
AcoI	YGGCCR	2 cut(s)	270, 2144
AcsI	RAATTY	4 cut(s)	1057, 1318, 1542, 2012
AcuI	CTGAAG	1 cut(s)	1026
AcvI	CACGTG	1 cut(s)	1988
AcyI	GRCGYC	2 cut(s)	26, 2220
AfaI	GTAC	7 cut(s)	852, 1298, 1462, 1481, 1591, 1623, 1890
AfiI	CCNNNNNNNGG	8 cut(s)	13, 232, 279, 709, 839, 1206, 1916, 2036
AflIII	ACRYGT	1 cut(s)	2234
AhdI	GACNNNNNGTC	1 cut(s)	131
AhlI	ACTAGT	1 cut(s)	853
AjiI	CACGTC	2 cut(s)	830, 1977
AjnI	CCWGG	8 cut(s)	105, 943, 1567, 1603, 1672, 1723, 1891, 2002
Alw26I	GTCTC	3 cut(s)	491, 1525, 2079
AlwI	GGATC	9 cut(s)	92, 104, 117, 710, 723, 917, 1181, 1190, 1380
Ama87I	CYCGRG	2 cut(s)	40, 543
AoxI	GGCC	9 cut(s)	3, 102, 193, 270, 1010, 1129, 1136, 1143, 2144
ApeKI	GCWGC	5 cut(s)	182, 284, 536, 1946, 2267
ApoI	RAATTY	4 cut(s)	1057, 1318, 1542, 2012
Asp718I	GGTACC	1 cut(s)	1888
AspLEI	GCGC	3 cut(s)	321, 728, 1561
AspS9I	GGNCC	7 cut(s)	4, 103, 428, 700, 1010, 1144, 2245
AsuHPI	GGTGA	5 cut(s)	316, 545, 959, 1540, 1688
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	40, 543
AvaII	GGWCC	3 cut(s)	428, 700, 2245
AxyI	CCTNAGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	1035
BalI	TGGCCA	1 cut(s)	272
BamHI	GGATCC	2 cut(s)	109, 715
BanI	GGYRCC	1 cut(s)	1888
BanII	GRGCYC	2 cut(s)	47, 217
BauI	CACGAG	1 cut(s)	954
BbrPI	CACGTG	1 cut(s)	1988
BbsI	GAAGAC	2 cut(s)	897, 2145
BbvCI	CCTCAGC	3 cut(s)	169, 1524, 1761
BbvI	GCAGC	5 cut(s)	169, 296, 523, 1933, 2254
BccI	CCATC	7 cut(s)	234, 409, 1162, 1229, 1502, 2236, 2257
BceAI	ACGGC	2 cut(s)	251, 2226
BciT130I	CCWGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
BciVI	GTATCC	1 cut(s)	2010
BcoDI	GTCTC	3 cut(s)	491, 1525, 2079
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	4 cut(s)	441, 756, 854, 1434
BfmI	CTRYAG	2 cut(s)	787, 1204
BfuI	GTATCC	1 cut(s)	2010
BglI	GCCNNNNNGGC	1 cut(s)	1009
BisI	GCNGC	9 cut(s)	140, 183, 186, 249, 285, 537, 760, 1947, 2268
BlsI	GCNGC	9 cut(s)	141, 184, 187, 250, 286, 538, 761, 1948, 2269
BmcAI	AGTACT	1 cut(s)	1298
Bme1390I	CCNGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
Bme18I	GGWCC	3 cut(s)	428, 700, 2245
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmeT110I	CYCGRG	2 cut(s)	40, 543
BmgBI	CACGTC	2 cut(s)	830, 1977
BmgT120I	GGNCC	7 cut(s)	4, 103, 428, 700, 1010, 1144, 2245
BmiI	GGNNCC	6 cut(s)	6, 111, 237, 717, 1176, 1890
BmrFI	CCNGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
BmrI	ACTGGG	2 cut(s)	194, 1335
BmsI	GCATC	7 cut(s)	364, 601, 658, 739, 1213, 1294, 1402
BmuI	ACTGGG	2 cut(s)	194, 1335
BoxI	GACNNNNGTC	1 cut(s)	1122
BpiI	GAAGAC	2 cut(s)	897, 2145
BpmI	CTGGAG	4 cut(s)	59, 309, 902, 2025
Bpu10I	CCTNAGC	4 cut(s)	169, 1524, 1552, 1761
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	2234
BsaAI	YACGTR	2 cut(s)	1988, 2033
BsaBI	GATNNNNATC	1 cut(s)	1806
BsaHI	GRCGYC	2 cut(s)	26, 2220
BsaI	GGTCTC	1 cut(s)	2079
BsaJI	CCNNGG	6 cut(s)	105, 231, 267, 455, 606, 719
BsaWI	WCCGGW	1 cut(s)	1857
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 1396, 1426
Bsc4I	CCNNNNNNNGG	8 cut(s)	13, 232, 279, 709, 839, 1206, 1916, 2036
Bse118I	RCCGGY	1 cut(s)	2146
Bse1I	ACTGG	6 cut(s)	200, 833, 1330, 1496, 2139, 2147
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	3 cut(s)	404, 678, 1800
Bse8I	GATNNNNATC	1 cut(s)	1806
BseBI	CCWGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
BseDI	CCNNGG	6 cut(s)	105, 231, 267, 455, 606, 719
BseGI	GGATG	6 cut(s)	147, 226, 575, 616, 673, 1513
BseJI	GATNNNNATC	1 cut(s)	1806
BseLI	CCNNNNNNNGG	8 cut(s)	13, 232, 279, 709, 839, 1206, 1916, 2036
BseMI	GCAATG	3 cut(s)	404, 678, 1800
BseMII	CTCAG	8 cut(s)	26, 183, 291, 786, 1515, 1752, 1914, 1928
BseNI	ACTGG	6 cut(s)	200, 833, 1330, 1496, 2139, 2147
BseRI	GAGGAG	5 cut(s)	82, 972, 1382, 1778, 2022
BseSI	GKGCMC	1 cut(s)	1035
BseXI	GCAGC	5 cut(s)	169, 296, 523, 1933, 2254
BseYI	CCCAGC	2 cut(s)	1226, 1240
BshFI	GGCC	9 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145, 2146
BshNI	GGYRCC	1 cut(s)	1888
BsiHKCI	CYCGRG	2 cut(s)	40, 543
BsiSI	CCGG	4 cut(s)	101, 1132, 1858, 2147
BslFI	GGGAC	2 cut(s)	119, 2207
BslI	CCNNNNNNNGG	8 cut(s)	13, 232, 279, 709, 839, 1206, 1916, 2036
BsmAI	GTCTC	3 cut(s)	491, 1525, 2079
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	119, 2207
BsmI	GAATGC	1 cut(s)	1751
BsnI	GGCC	9 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145, 2146
Bso31I	GGTCTC	1 cut(s)	2079
BsoBI	CYCGRG	2 cut(s)	40, 543
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	3 cut(s)	47, 217, 1035
Bsp1407I	TGTACA	2 cut(s)	1460, 1621
Bsp19I	CCATGG	2 cut(s)	606, 719
BspACI	CCGC	7 cut(s)	87, 137, 140, 180, 186, 249, 760
BspANI	GGCC	9 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145, 2146
BspCNI	CTCAG	8 cut(s)	25, 182, 292, 787, 1516, 1753, 1915, 1929
BspLI	GGNNCC	6 cut(s)	6, 111, 237, 717, 1176, 1890
BspPI	GGATC	9 cut(s)	92, 104, 117, 710, 723, 917, 1181, 1190, 1380
BspQI	GCTCTTC	1 cut(s)	1936
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	1888
BspTNI	GGTCTC	1 cut(s)	2079
BsrDI	GCAATG	3 cut(s)	404, 678, 1800
BsrFI	RCCGGY	1 cut(s)	2146
BsrGI	TGTACA	2 cut(s)	1460, 1621
BsrI	ACTGG	6 cut(s)	200, 833, 1330, 1496, 2139, 2147
BssAI	RCCGGY	1 cut(s)	2146
BssECI	CCNNGG	6 cut(s)	105, 231, 267, 455, 606, 719
BssNI	GRCGYC	2 cut(s)	26, 2220
BssSI	CACGAG	1 cut(s)	954
BssT1I	CCWWGG	3 cut(s)	231, 606, 719
Bst2BI	CACGAG	1 cut(s)	954
Bst2UI	CCWGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
Bst4CI	ACNGT	8 cut(s)	277, 740, 896, 1121, 1431, 1447, 1465, 2288
Bst6I	CTCTTC	2 cut(s)	674, 1936
BstACI	GRCGYC	2 cut(s)	26, 2220
BstAPI	GCANNNNNTGC	3 cut(s)	1223, 1757, 1795
BstAUI	TGTACA	2 cut(s)	1460, 1621
BstBAI	YACGTR	2 cut(s)	1988, 2033
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	6 cut(s)	462, 764, 768, 1361, 1791, 1822
BstDSI	CCRYGG	3 cut(s)	267, 606, 719
BstEII	GGTNACC	1 cut(s)	551
BstF5I	GGATG	6 cut(s)	147, 226, 575, 616, 673, 1513
BstHHI	GCGC	3 cut(s)	321, 728, 1561
BstMAI	GTCTC	3 cut(s)	491, 1525, 2079
BstMWI	GCNNNNNNNGC	9 cut(s)	179, 290, 406, 466, 1009, 1223, 1757, 1795, 2152
BstNI	CCWGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
BstNSI	RCATGY	1 cut(s)	2238
BstPAI	GACNNNNGTC	1 cut(s)	1122
BstPI	GGTNACC	1 cut(s)	551
BstSCI	CCNGG	8 cut(s)	105, 943, 1567, 1603, 1672, 1723, 1891, 2002
BstSFI	CTRYAG	2 cut(s)	787, 1204
BstSLI	GKGCMC	1 cut(s)	1035
BstV1I	GCAGC	5 cut(s)	169, 296, 523, 1933, 2254
BstV2I	GAAGAC	2 cut(s)	897, 2145
BstX2I	RGATCY	3 cut(s)	109, 715, 1186
BstYI	RGATCY	3 cut(s)	109, 715, 1186
Bsu36I	CCTNAGG	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	2010
BsuRI	GGCC	9 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145, 2146
BtgI	CCRYGG	3 cut(s)	267, 606, 719
BtrI	CACGTC	2 cut(s)	830, 1977
BtsCI	GGATG	6 cut(s)	147, 226, 575, 616, 673, 1513
BtsI	GCAGTG	1 cut(s)	2220
BtsIMutI	CAGTG	6 cut(s)	273, 745, 840, 1323, 1452, 2220
Cac8I	GCNNGC	6 cut(s)	462, 764, 768, 1361, 1791, 1822
CfoI	GCGC	3 cut(s)	321, 728, 1561
Cfr10I	RCCGGY	1 cut(s)	2146
Cfr13I	GGNCC	7 cut(s)	4, 103, 428, 700, 1010, 1144, 2245
CseI	GACGC	1 cut(s)	34
CsiI	ACCWGGT	1 cut(s)	1891
Csp6I	GTAC	7 cut(s)	851, 1297, 1461, 1480, 1590, 1622, 1889
CspCI	CAANNNNNGTGG	2 cut(s)	2196, 2231
CviQI	GTAC	7 cut(s)	851, 1297, 1461, 1480, 1590, 1622, 1889
DrdI	GACNNNNNNGTC	1 cut(s)	2147
DriI	GACNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	2147
EaeI	YGGCCR	2 cut(s)	270, 2144
Eam1104I	CTCTTC	2 cut(s)	674, 1936
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	2 cut(s)	674, 1936
Eco130I	CCWWGG	3 cut(s)	231, 606, 719
Eco147I	AGGCCT	2 cut(s)	195, 1138
Eco24I	GRGCYC	2 cut(s)	47, 217
Eco31I	GGTCTC	1 cut(s)	2079
Eco32I	GATATC	1 cut(s)	734
Eco47I	GGWCC	3 cut(s)	428, 700, 2245
Eco57I	CTGAAG	1 cut(s)	1026
Eco72I	CACGTG	1 cut(s)	1988
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	40, 543
Eco91I	GGTNACC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	1542
EcoRII	CCWGG	8 cut(s)	105, 943, 1567, 1603, 1672, 1723, 1891, 2002
EcoRV	GATATC	1 cut(s)	734
EcoT14I	CCWWGG	3 cut(s)	231, 606, 719
EcoT22I	ATGCAT	2 cut(s)	1219, 1753
EcoT38I	GRGCYC	2 cut(s)	47, 217
ErhI	CCWWGG	3 cut(s)	231, 606, 719
Esp3I	CGTCTC	1 cut(s)	491
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 1933, 1965
FaqI	GGGAC	2 cut(s)	119, 2207
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	9 cut(s)	140, 183, 186, 249, 285, 537, 760, 1947, 2268
FokI	GGATG	6 cut(s)	134, 213, 562, 623, 680, 1520
FriOI	GRGCYC	2 cut(s)	47, 217
Fsp4HI	GCNGC	9 cut(s)	140, 183, 186, 249, 285, 537, 760, 1947, 2268
FspBI	CTAG	4 cut(s)	441, 756, 854, 1434
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	3 cut(s)	320, 727, 1560
GluI	GCNGC	9 cut(s)	140, 183, 186, 249, 285, 537, 760, 1947, 2268
GsaI	CCCAGC	2 cut(s)	1230, 1244
GsuI	CTGGAG	4 cut(s)	59, 309, 902, 2025
HaeIII	GGCC	9 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145, 2146
HapII	CCGG	4 cut(s)	101, 1132, 1858, 2147
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	3 cut(s)	321, 728, 1561
Hin1I	GRCGYC	2 cut(s)	26, 2220
Hin6I	GCGC	3 cut(s)	319, 726, 1559
HinP1I	GCGC	3 cut(s)	319, 726, 1559
HincII	GTYRAC	1 cut(s)	1855
HindII	GTYRAC	1 cut(s)	1855
HindIII	AAGCTT	1 cut(s)	1549
HinfI	GANTC	2 cut(s)	436, 843
HpaII	CCGG	4 cut(s)	101, 1132, 1858, 2147
HphI	GGTGA	5 cut(s)	316, 545, 959, 1540, 1688
Hpy166II	GTNNAC	5 cut(s)	446, 899, 1855, 1907, 2218
Hpy188III	TCNNGA	8 cut(s)	14, 590, 665, 881, 1397, 1434, 1505, 2078
Hpy8I	GTNNAC	5 cut(s)	446, 899, 1855, 1907, 2218
Hpy99I	CGWCG	2 cut(s)	28, 1431
HpyAV	CCTTC	4 cut(s)	833, 1001, 1079, 1431
HpyCH4III	ACNGT	8 cut(s)	277, 740, 896, 1121, 1431, 1447, 1465, 2288
HpyCH4IV	ACGT	5 cut(s)	829, 1976, 1987, 2032, 2220
HpyF10VI	GCNNNNNNNGC	9 cut(s)	179, 290, 406, 466, 1009, 1223, 1757, 1795, 2152
HpySE526I	ACGT	5 cut(s)	829, 1976, 1987, 2032, 2220
Hsp92I	GRCGYC	2 cut(s)	26, 2220
HspAI	GCGC	3 cut(s)	319, 726, 1559
KpnI	GGTACC	1 cut(s)	1892
LguI	GCTCTTC	1 cut(s)	1936
LmnI	GCTCC	4 cut(s)	235, 290, 757, 1621
Lsp1109I	GCAGC	5 cut(s)	169, 296, 523, 1933, 2254
LweI	GCATC	7 cut(s)	364, 601, 658, 739, 1213, 1294, 1402
MabI	ACCWGGT	1 cut(s)	1891
MaeI	CTAG	4 cut(s)	441, 756, 854, 1434
MaeII	ACGT	5 cut(s)	829, 1976, 1987, 2032, 2220
MaeIII	GTNAC	4 cut(s)	551, 1877, 1972, 2116
MfeI	CAATTG	1 cut(s)	1341
MflI	RGATCY	3 cut(s)	109, 715, 1186
MhlI	GDGCHC	3 cut(s)	47, 217, 1035
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	272
Mph1103I	ATGCAT	2 cut(s)	1219, 1753
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	6 cut(s)	1026, 1154, 1263, 1686, 1710, 2199
MslI	CAYNNNNRTG	2 cut(s)	1746, 2156
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	3 cut(s)	182, 251, 287
MspI	CCGG	4 cut(s)	101, 1132, 1858, 2147
MspR9I	CCNGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
MunI	CAATTG	1 cut(s)	1341
Mva1269I	GAATGC	1 cut(s)	1751
MvaI	CCWGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
MwoI	GCNNNNNNNGC	9 cut(s)	179, 290, 406, 466, 1009, 1223, 1757, 1795, 2152
NcoI	CCATGG	2 cut(s)	606, 719
NlaIV	GGNNCC	6 cut(s)	6, 111, 237, 717, 1176, 1890
NmuCI	GTSAC	3 cut(s)	551, 1972, 2116
NsbI	TGCGCA	1 cut(s)	727
NsiI	ATGCAT	2 cut(s)	1219, 1753
NspI	RCATGY	1 cut(s)	2238
NspV	TTCGAA	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	543
PceI	AGGCCT	2 cut(s)	195, 1138
PciI	ACATGT	1 cut(s)	2234
PciSI	GCTCTTC	1 cut(s)	1936
PctI	GAATGC	1 cut(s)	1751
PfeI	GAWTC	2 cut(s)	436, 843
PflFI	GACNNNGTC	1 cut(s)	1447
PflMI	CCANNNNNTGG	3 cut(s)	232, 1916, 2036
PfoI	TCCNGGA	1 cut(s)	2002
PkrI	GCNGC	9 cut(s)	141, 184, 187, 250, 286, 538, 761, 1948, 2269
PmaCI	CACGTG	1 cut(s)	1988
PmlI	CACGTG	1 cut(s)	1988
Ppu21I	YACGTR	2 cut(s)	1988, 2033
PpuMI	RGGWCCY	1 cut(s)	428
PscI	ACATGT	1 cut(s)	2234
PshAI	GACNNNNGTC	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	8 cut(s)	105, 943, 1567, 1603, 1672, 1723, 1891, 2002
PspCI	CACGTG	1 cut(s)	1988
PspEI	GGTNACC	1 cut(s)	551
PspFI	CCCAGC	2 cut(s)	1226, 1240
PspGI	CCWGG	8 cut(s)	105, 943, 1567, 1603, 1672, 1723, 1891, 2002
PspN4I	GGNNCC	6 cut(s)	6, 111, 237, 717, 1176, 1890
PspPI	GGNCC	7 cut(s)	4, 103, 428, 700, 1010, 1144, 2245
PspPPI	RGGWCCY	1 cut(s)	428
PspXI	VCTCGAGB	1 cut(s)	543
PsuI	RGATCY	3 cut(s)	109, 715, 1186
PsyI	GACNNNGTC	1 cut(s)	1447
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	7 cut(s)	852, 1298, 1462, 1481, 1591, 1623, 1890
RsaNI	GTAC	7 cut(s)	851, 1297, 1461, 1480, 1590, 1622, 1889
RseI	CAYNNNNRTG	2 cut(s)	1746, 2156
SapI	GCTCTTC	1 cut(s)	1936
SaqAI	TTAA	6 cut(s)	1026, 1154, 1263, 1686, 1710, 2199
SatI	GCNGC	9 cut(s)	140, 183, 186, 249, 285, 537, 760, 1947, 2268
Sau96I	GGNCC	7 cut(s)	4, 103, 428, 700, 1010, 1144, 2245
ScaI	AGTACT	1 cut(s)	1298
ScrFI	CCNGG	8 cut(s)	107, 945, 1569, 1605, 1674, 1725, 1893, 2004
SduI	GDGCHC	3 cut(s)	47, 217, 1035
SexAI	ACCWGGT	1 cut(s)	1891
SfaNI	GCATC	7 cut(s)	364, 601, 658, 739, 1213, 1294, 1402
SfcI	CTRYAG	2 cut(s)	787, 1204
Sfr274I	CTCGAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	3 cut(s)	428, 700, 2245
SlaI	CTCGAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	2 cut(s)	1746, 2156
SmlI	CTYRAG	2 cut(s)	543, 2249
SmoI	CTYRAG	2 cut(s)	543, 2249
SpeI	ACTAGT	1 cut(s)	853
SseBI	AGGCCT	2 cut(s)	195, 1138
SsiI	CCGC	7 cut(s)	87, 137, 140, 180, 186, 249, 760
SspI	AATATT	1 cut(s)	1383
SspMI	CTAG	4 cut(s)	441, 756, 854, 1434
StuI	AGGCCT	2 cut(s)	195, 1138
StyD4I	CCNGG	8 cut(s)	105, 943, 1567, 1603, 1672, 1723, 1891, 2002
StyI	CCWWGG	3 cut(s)	231, 606, 719
TaaI	ACNGT	8 cut(s)	277, 740, 896, 1121, 1431, 1447, 1465, 2288
TaiI	ACGT	5 cut(s)	832, 1979, 1990, 2035, 2223
TaqI	TCGA	8 cut(s)	82, 159, 544, 970, 1079, 1126, 1426, 2131
TaqII	GACCGA	1 cut(s)	2061
TatI	WGTACW	4 cut(s)	850, 1296, 1460, 1621
TauI	GCSGC	4 cut(s)	142, 188, 251, 762
TfiI	GAWTC	2 cut(s)	436, 843
Tru1I	TTAA	6 cut(s)	1026, 1154, 1263, 1686, 1710, 2199
Tru9I	TTAA	6 cut(s)	1026, 1154, 1263, 1686, 1710, 2199
TscAI	CASTG	6 cut(s)	280, 745, 840, 1330, 1452, 2220
TseFI	GTSAC	3 cut(s)	551, 1972, 2116
TseI	GCWGC	5 cut(s)	182, 284, 536, 1946, 2267
Tsp45I	GTSAC	3 cut(s)	551, 1972, 2116
TspDTI	ATGAA	4 cut(s)	521, 689, 1730, 2007
TspGWI	ACGGA	3 cut(s)	121, 1052, 1497
TspRI	CASTG	6 cut(s)	280, 745, 840, 1330, 1452, 2220
Tth111I	GACNNNGTC	1 cut(s)	1447
Van91I	CCANNNNNTGG	3 cut(s)	232, 1916, 2036
VpaK11BI	GGWCC	3 cut(s)	428, 700, 2245
XapI	RAATTY	4 cut(s)	1057, 1318, 1542, 2012
XbaI	TCTAGA	1 cut(s)	1433
XceI	RCATGY	1 cut(s)	2238
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 613
XhoI	CTCGAG	1 cut(s)	543
XspI	CTAG	4 cut(s)	441, 756, 854, 1434
ZraI	GACGTC	1 cut(s)	2221
ZrmI	AGTACT	1 cut(s)	1298
Zsp2I	ATGCAT	2 cut(s)	1219, 1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.