Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Forward (+)

30706626 .. 30712253

Gene Structure 5628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1166900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2367 bp

ATGGCCTCAGCTTCGAAAAAAACGACGCCTTCCTGTTGCTTCCGCCCCGATTCGGCGGCTCTCGTTCCGCGCCAGGCGGCGCCGGCGGCGAAGACTTCTTCCAGCGCCGTCGTCTCGGCTTCCGGTATTCAAGATTGGAGTAGCGTCGCTGGCGCCGAGGATCGGCGCGATGATCAGCGCCCCAAGAATATCGCCATGGCGGCCTTGATTCCCAAACCTTCCGCCAATGCCTCCACTGCAGGCATCCCAATCATGCTTAGGCCTCAAACAAGGCACCCGTTGGACCCTTTATCTGCTGCTGAAATCTCTGTCGCAGTGGCAACTGTCAGGGCAGCTGGAGCGACGCCTGAGGTTAGAGATAGTATGCGTTTTGTTGAAGTGGTTCTATTGGAACCAGATAAACACGTTGTTGCATTAGCAGATGCATACTTCTTCCCACCTTTCCAGCCATCATTACTTCCCAGAACCAAAGGTGGACCTATAATCCCAACCAAGCTTCCCCCTCGGCGAGCTAGACTTGTTGTTTACAATAAGAAGTCAAATGAGACAAGCACGTGGATTGTTGAGCTATCAGAAGTACATGCAGCTACTCGAGGTGGACATCACAGAGGAAAAGTAGTATCATCAGAAGTTGTTCCAGATGTTCAGCCTCCCATGGATGCTGTAGAATATGCAGAATGTGAAGCTGTTGTGAAAGACTTTCCTCCATTTAGAGAGGCTATGAAGAAGAGAGGTATTGAAGACATGGACCTTGTGATGGTTGATGCCTGGTGTGTTGGCTATCATAGTGAGGCTGATTCTCCTAGCCAAAGGCTTGCTAAACCACTGATATTCTGTAGAACTGAGAGTGACTGCCCTATGGAAAATGGTTACGCACGCCCAGTTGAGGGCATCTATATACTTGTTGATATGCAAAACATGATGGTGATAAAGTTTGAAGACCGTAAACTTGTTCCCCTACCTCCAGCCGATCCGTTGAGGAACTATACTCCTGGAGAAACAAGAGGTGGTGTTGATCGAAGTGATATAAAACCTTTACAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTTAATGGGTACTTTGTGGAGTGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCCAGGGAGGGACTGGTTATATATTCTGTGGCCTATGTTGACGGCAATAGAGGGCGAAGGCCTGTAGCCCATAGGTTGAGTTTTGTGGAAATGGTGGTGCCATATGGAGATCCAAATGATCCACATTATAGAAAAAATGCTTTCGATGCCGGGGAAGACGGCCTTGGTAAAAATGCACATTCTCTAAAGAAGGGGTGTGATTGTTTGGGCTTAATCAAATACTTTGATGCACATTTTACGAACTTCACTGGAGGTATTGAAACTATCGAAAATTGTGTATGTTTGCACGAAGAAGATCATGGAATTCTGTGGAAGCATCAGGACTGGAGAACAGGCTTAGCAGAAGTGCGCAGGTCAAGAAGGCTAACAGTGTCATTTATATGTACTGTGGCTAATTATGAGTACGGGTTCTTCTGGCACTTTTATCAGGATGGTAAAATTGAAGCTGAAGTTAAACTTACTGGAATTCTCAGCTTGGGAGCACTTCAACCTGGAGAGGTTAGAAAGTATGGTACTGTGATTGCACCTGGGCTATATGCACCAGTTCATCAACACTTTTTTGTTGCTCGTATGGATATGGCTGTTGATTGCAAGCCTGGAGAAACTTACAATCAGGTTGTGGAGATGGATGTTAAGGTTGAGAAACCTGGAGAGAATAACGTCCACAGCAATGCATTTTATGCCGAGGAGACACTTCTCAGGACTGAATCGGAGGCTATGCGTGACTGTAATCCTTTGACGGCTCGCCATTGGATTGTACAGAACACACGAACTGTAAATAGGACCGGACAGTTAACAGGCTACAAGCTTGTTCCGGGTTCAAACTGTTTGCCATTAGCTGGTCCTGAGGCCAAGTTTTTGCGAAGAGCAGCTTTCCTGAAACATAATCTATGGGTTACACCATATTCACGTGATGAGATGTTTCCTGGAGGAGAGTTTCCAAATCAAAATCCGCGTGCTGGTGAAGGATTAGCCACATGGGTTAAGAAAAATCGCTCTCTGGAAGAAACTGATATAGTTCTTTGGTATGTATTTGGAATCACACACGTACCACGGTTAGAAGATTGGCCTGTTATGCCAGTGGAGCGCATTGGATTTATGCTCATGCCTCACGGATTCTTCAACGCCTCTCCAGCAGTGGATGTTCCACCAAGTGCGTGTGAATTGGAAGCCAAAGAAAATGATGTCAAAGACAGTGGAGTAGCCAAGCCGATTCAGAACGGGTTGCTAGCAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

789

Amino Acids

87.71

Weight (kDa)

6.74

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	217 - 320	6.7e-28	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	346 - 754	2.2e-155	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1475
Acc36I	ACCTGC	1 cut(s)	1467
AccB1I	GGYRCC	4 cut(s)	79, 152, 273, 1222
AccB7I	CCANNNNNTGG	1 cut(s)	1964
AccII	CGCG	3 cut(s)	70, 168, 2080
AciI	CCGC	8 cut(s)	43, 56, 68, 77, 86, 200, 222, 2078
AclWI	GGATC	4 cut(s)	168, 965, 1229, 1238
AcsI	RAATTY	3 cut(s)	1105, 1428, 1590
AcuI	CTGAAG	2 cut(s)	1074, 1593
AcvI	CACGTG	2 cut(s)	555, 2036
AcyI	GRCGYC	4 cut(s)	26, 80, 153, 344
AdeI	CACNNNGTG	1 cut(s)	2279
AfaI	GTAC	7 cut(s)	579, 1082, 1510, 1529, 1639, 1884, 2175
AfiI	CCNNNNNNNGG	8 cut(s)	52, 162, 757, 886, 887, 1133, 1964, 2084
AflIII	ACRYGT	2 cut(s)	403, 2170
AgsI	TTSAA	9 cut(s)	131, 377, 740, 938, 1385, 1568, 1613, 1947, 2248
AjnI	CCWGG	9 cut(s)	72, 767, 991, 1127, 1615, 1651, 1720, 1771, 2050
AjuI	GAANNNNNNNTTGG	2 cut(s)	1272, 1304
Alw21I	GWGCWC	1 cut(s)	1609
Alw26I	GTCTC	3 cut(s)	118, 539, 1808
AlwI	GGATC	4 cut(s)	168, 965, 1229, 1238
Ama87I	CYCGRG	1 cut(s)	591
AoxI	GGCC	8 cut(s)	3, 201, 260, 1155, 1184, 1285, 1974, 2192
ApeKI	GCWGC	4 cut(s)	296, 332, 584, 1994
ApoI	RAATTY	3 cut(s)	1105, 1428, 1590
Asp700I	GAANNNNTTC	2 cut(s)	381, 633
AspLEI	GCGC	8 cut(s)	72, 82, 107, 155, 168, 180, 1476, 2214
AspS9I	GGNCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
AsuC2I	CCSGG	2 cut(s)	1276, 1941
AsuHPI	GGTGA	2 cut(s)	937, 2099
AsuII	TTCGAA	1 cut(s)	14
AsuNHI	GCTAGC	1 cut(s)	2353
AvaI	CYCGRG	1 cut(s)	591
AvaII	GGWCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
AxyI	CCTNAGG	2 cut(s)	348, 1971
BaeI	ACNNNNGTAYC	2 cut(s)	2157, 2190
BanI	GGYRCC	4 cut(s)	79, 152, 273, 1222
BarI	GAAGNNNNNNTAC	2 cut(s)	1520, 1552
BbrPI	CACGTG	2 cut(s)	555, 2036
BbsI	GAAGAC	4 cut(s)	98, 747, 945, 1287
Bbv12I	GWGCWC	1 cut(s)	1609
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	4 cut(s)	283, 344, 596, 2006
BccI	CCATC	5 cut(s)	457, 751, 916, 1550, 1744
BceAI	ACGGC	4 cut(s)	92, 1183, 1300, 1881
BciT130I	CCWGG	9 cut(s)	74, 769, 993, 1129, 1617, 1653, 1722, 1773, 2052
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	1276, 1941
BcoDI	GTCTC	3 cut(s)	118, 539, 1808
BfaI	CTAG	3 cut(s)	513, 804, 2354
BfmI	CTRYAG	4 cut(s)	237, 663, 835, 1188
BfoI	RGCGCY	4 cut(s)	83, 108, 156, 181
BfuAI	ACCTGC	1 cut(s)	1467
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	8 cut(s)	57, 78, 87, 201, 297, 333, 585, 1995
BlpI	GCTNAGC	1 cut(s)	1462
BlsI	GCNGC	8 cut(s)	58, 79, 88, 202, 298, 334, 586, 1996
Bme18I	GGWCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
BmeT110I	CYCGRG	1 cut(s)	591
BmgT120I	GGNCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
BmiI	GGNNCC	6 cut(s)	81, 154, 275, 285, 393, 1224
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	8 cut(s)	252, 412, 649, 754, 900, 1261, 1342, 1450
BmtI	GCTAGC	1 cut(s)	2357
BmuI	ACTGGG	1 cut(s)	875
BpiI	GAAGAC	4 cut(s)	98, 747, 945, 1287
Bpu10I	CCTNAGC	2 cut(s)	7, 257
Bpu1102I	GCTNAGC	1 cut(s)	1462
Bpu14I	TTCGAA	1 cut(s)	14
BpuMI	CCSGG	2 cut(s)	1276, 1941
BsaAI	YACGTR	3 cut(s)	555, 2036, 2173
BsaHI	GRCGYC	4 cut(s)	26, 80, 153, 344
BsaWI	WCCGGW	2 cut(s)	122, 1910
Bsc4I	CCNNNNNNNGG	8 cut(s)	52, 162, 757, 886, 887, 1133, 1964, 2084
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	7 cut(s)	881, 1143, 1378, 1454, 1591, 1667, 2204
Bse21I	CCTNAGG	2 cut(s)	348, 1971
Bse3DI	GCAATG	1 cut(s)	1801
BseBI	CCWGG	9 cut(s)	74, 769, 993, 1129, 1617, 1653, 1722, 1773, 2052
BseGI	GGATG	5 cut(s)	243, 664, 1561, 1759, 2272
BseLI	CCNNNNNNNGG	8 cut(s)	52, 162, 757, 886, 887, 1133, 1964, 2084
BseMI	GCAATG	1 cut(s)	1801
BseMII	CTCAG	6 cut(s)	21, 339, 834, 1609, 1837, 1962
BseNI	ACTGG	7 cut(s)	881, 1143, 1378, 1454, 1591, 1667, 2204
BseRI	GAGGAG	2 cut(s)	1826, 2070
BseXI	GCAGC	4 cut(s)	283, 344, 596, 2006
Bsh1236I	CGCG	3 cut(s)	70, 168, 2080
BshFI	GGCC	8 cut(s)	5, 203, 262, 1157, 1186, 1287, 1976, 2194
BshNI	GGYRCC	4 cut(s)	79, 152, 273, 1222
BsiHKAI	GWGCWC	1 cut(s)	1609
BsiHKCI	CYCGRG	1 cut(s)	591
BsiSI	CCGG	5 cut(s)	83, 123, 1275, 1911, 1940
BslFI	GGGAC	1 cut(s)	1149
BslI	CCNNNNNNNGG	8 cut(s)	52, 162, 757, 886, 887, 1133, 1964, 2084
BsmAI	GTCTC	3 cut(s)	118, 539, 1808
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	1149
BsnI	GGCC	8 cut(s)	5, 203, 262, 1157, 1186, 1287, 1976, 2194
BsoBI	CYCGRG	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	1609
Bsp1407I	TGTACA	1 cut(s)	1882
Bsp143I	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
Bsp1720I	GCTNAGC	1 cut(s)	1462
Bsp19I	CCATGG	2 cut(s)	195, 654
BspACI	CCGC	8 cut(s)	43, 56, 68, 77, 86, 200, 222, 2078
BspANI	GGCC	8 cut(s)	5, 203, 262, 1157, 1186, 1287, 1976, 2194
BspCNI	CTCAG	6 cut(s)	20, 340, 835, 1608, 1836, 1963
BspFNI	CGCG	3 cut(s)	70, 168, 2080
BspLI	GGNNCC	6 cut(s)	81, 154, 275, 285, 393, 1224
BspMAI	CTGCAG	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	1467
BspOI	GCTAGC	1 cut(s)	2357
BspPI	GGATC	4 cut(s)	168, 965, 1229, 1238
BspQI	GCTCTTC	1 cut(s)	1984
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	4 cut(s)	79, 152, 273, 1222
BsrDI	GCAATG	1 cut(s)	1801
BsrFI	RCCGGY	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	1882
BsrI	ACTGG	7 cut(s)	881, 1143, 1378, 1454, 1591, 1667, 2204
BssAI	RCCGGY	1 cut(s)	82
BssMI	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
BssNI	GRCGYC	4 cut(s)	26, 80, 153, 344
BssT1I	CCWWGG	3 cut(s)	195, 654, 1288
Bst2UI	CCWGG	9 cut(s)	74, 769, 993, 1129, 1617, 1653, 1722, 1773, 2052
Bst6I	CTCTTC	2 cut(s)	722, 1984
BstACI	GRCGYC	4 cut(s)	26, 80, 153, 344
BstAPI	GCANNNNNTGC	1 cut(s)	1805
BstAUI	TGTACA	1 cut(s)	1882
BstBAI	YACGTR	3 cut(s)	555, 2036, 2173
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	8 cut(s)	7, 257, 348, 843, 1462, 1595, 1823, 1971
BstDSI	CCRYGG	3 cut(s)	195, 654, 2177
BstF5I	GGATG	5 cut(s)	243, 664, 1561, 1759, 2272
BstFNI	CGCG	3 cut(s)	70, 168, 2080
BstH2I	RGCGCY	4 cut(s)	83, 108, 156, 181
BstHHI	GCGC	8 cut(s)	72, 82, 107, 155, 168, 180, 1476, 2214
BstKTI	GATC	7 cut(s)	163, 175, 973, 1018, 1237, 1246, 1423
BstMAI	GTCTC	3 cut(s)	118, 539, 1808
BstMBI	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
BstNI	CCWGG	9 cut(s)	74, 769, 993, 1129, 1617, 1653, 1722, 1773, 2052
BstNSI	RCATGY	1 cut(s)	584
BstSFI	CTRYAG	4 cut(s)	237, 663, 835, 1188
BstUI	CGCG	3 cut(s)	70, 168, 2080
BstV1I	GCAGC	4 cut(s)	283, 344, 596, 2006
BstV2I	GAAGAC	4 cut(s)	98, 747, 945, 1287
BstX2I	RGATCY	1 cut(s)	1234
BstYI	RGATCY	1 cut(s)	1234
Bsu36I	CCTNAGG	2 cut(s)	348, 1971
BsuRI	GGCC	8 cut(s)	5, 203, 262, 1157, 1186, 1287, 1976, 2194
BtgI	CCRYGG	3 cut(s)	195, 654, 2177
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	5 cut(s)	243, 664, 1561, 1759, 2272
BtsI	GCAGTG	3 cut(s)	234, 321, 2268
BtsIMutI	CAGTG	8 cut(s)	234, 321, 824, 1371, 1500, 2211, 2268, 2326
BveI	ACCTGC	1 cut(s)	1467
CfoI	GCGC	8 cut(s)	72, 82, 107, 155, 168, 180, 1476, 2214
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
CseI	GACGC	3 cut(s)	34, 133, 352
Csp6I	GTAC	7 cut(s)	578, 1081, 1509, 1528, 1638, 1883, 2174
CspCI	CAANNNNNGTGG	2 cut(s)	2302, 2337
CviAII	CATG	9 cut(s)	196, 253, 581, 655, 745, 919, 1424, 2103, 2230
CviQI	GTAC	7 cut(s)	578, 1081, 1509, 1528, 1638, 1883, 2174
DdeI	CTNAG	8 cut(s)	7, 257, 348, 843, 1462, 1595, 1823, 1971
DinI	GGCGCC	2 cut(s)	81, 154
DpnI	GATC	7 cut(s)	162, 174, 972, 1017, 1236, 1245, 1422
DpnII	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
DraIII	CACNNNGTG	1 cut(s)	2279
Eam1104I	CTCTTC	2 cut(s)	722, 1984
EarI	CTCTTC	2 cut(s)	722, 1984
EciI	GGCGGA	2 cut(s)	32, 211
Eco130I	CCWWGG	3 cut(s)	195, 654, 1288
Eco147I	AGGCCT	2 cut(s)	262, 1186
Eco47I	GGWCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
Eco57I	CTGAAG	2 cut(s)	1074, 1593
Eco72I	CACGTG	2 cut(s)	555, 2036
Eco81I	CCTNAGG	2 cut(s)	348, 1971
Eco88I	CYCGRG	1 cut(s)	591
EcoRI	GAATTC	2 cut(s)	1428, 1590
EcoRII	CCWGG	9 cut(s)	72, 767, 991, 1127, 1615, 1651, 1720, 1771, 2050
EcoT14I	CCWWGG	3 cut(s)	195, 654, 1288
EcoT22I	ATGCAT	2 cut(s)	427, 1801
EgeI	GGCGCC	2 cut(s)	81, 154
EheI	GGCGCC	2 cut(s)	81, 154
ErhI	CCWWGG	3 cut(s)	195, 654, 1288
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	9 cut(s)	199, 256, 584, 658, 748, 922, 1427, 2106, 2233
FalI	AAGNNNNNCTT	6 cut(s)	1272, 1304, 1566, 1598, 1981, 2013
FaqI	GGGAC	1 cut(s)	1149
FatI	CATG	9 cut(s)	195, 252, 580, 654, 744, 918, 1423, 2102, 2229
FauNDI	CATATG	1 cut(s)	1228
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	8 cut(s)	57, 78, 87, 201, 297, 333, 585, 1995
FokI	GGATG	5 cut(s)	230, 671, 1568, 1766, 2279
Fsp4HI	GCNGC	8 cut(s)	57, 78, 87, 201, 297, 333, 585, 1995
FspBI	CTAG	3 cut(s)	513, 804, 2354
FspI	TGCGCA	1 cut(s)	1475
GlaI	GCGC	8 cut(s)	71, 81, 106, 154, 167, 179, 1475, 2213
GluI	GCNGC	8 cut(s)	57, 78, 87, 201, 297, 333, 585, 1995
HaeII	RGCGCY	4 cut(s)	83, 108, 156, 181
HaeIII	GGCC	8 cut(s)	5, 203, 262, 1157, 1186, 1287, 1976, 2194
HapII	CCGG	5 cut(s)	83, 123, 1275, 1911, 1940
HgaI	GACGC	3 cut(s)	34, 133, 352
HhaI	GCGC	8 cut(s)	72, 82, 107, 155, 168, 180, 1476, 2214
Hin1I	GRCGYC	4 cut(s)	26, 80, 153, 344
Hin1II	CATG	9 cut(s)	199, 256, 584, 658, 748, 922, 1427, 2106, 2233
Hin6I	GCGC	8 cut(s)	70, 80, 105, 153, 166, 178, 1474, 2212
HinP1I	GCGC	8 cut(s)	70, 80, 105, 153, 166, 178, 1474, 2212
HincII	GTYRAC	2 cut(s)	1165, 1920
HindII	GTYRAC	2 cut(s)	1165, 1920
HindIII	AAGCTT	3 cut(s)	494, 1063, 1931
HinfI	GANTC	8 cut(s)	50, 208, 797, 1119, 1832, 2163, 2241, 2338
HpaI	GTTAAC	1 cut(s)	1920
HpaII	CCGG	5 cut(s)	83, 123, 1275, 1911, 1940
HphI	GGTGA	2 cut(s)	937, 2099
Hpy166II	GTNNAC	7 cut(s)	476, 526, 599, 947, 1165, 1789, 1920
Hpy188I	TCNGA	5 cut(s)	574, 628, 1837, 2343, 2366
Hpy188III	TCNNGA	9 cut(s)	131, 638, 1445, 1482, 1553, 1825, 1970, 2002, 2126
Hpy8I	GTNNAC	7 cut(s)	476, 526, 599, 947, 1165, 1789, 1920
Hpy99I	CGWCG	4 cut(s)	28, 113, 149, 346
HpyAV	CCTTC	7 cut(s)	39, 228, 1049, 1176, 1309, 1479, 2084
HpyCH4IV	ACGT	5 cut(s)	405, 554, 1785, 2035, 2172
HpyF3I	CTNAG	8 cut(s)	7, 257, 348, 843, 1462, 1595, 1823, 1971
HpySE526I	ACGT	5 cut(s)	405, 554, 1785, 2035, 2172
Hsp92I	GRCGYC	4 cut(s)	26, 80, 153, 344
Hsp92II	CATG	9 cut(s)	199, 256, 584, 658, 748, 922, 1427, 2106, 2233
HspAI	GCGC	8 cut(s)	70, 80, 105, 153, 166, 178, 1474, 2212
KasI	GGCGCC	2 cut(s)	79, 152
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	1920
Kzo9I	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
LguI	GCTCTTC	1 cut(s)	1984
LmnI	GCTCC	3 cut(s)	338, 1604, 2209
Lsp1109I	GCAGC	4 cut(s)	283, 344, 596, 2006
LweI	GCATC	8 cut(s)	252, 412, 649, 754, 900, 1261, 1342, 1450
MaeI	CTAG	3 cut(s)	513, 804, 2354
MaeII	ACGT	5 cut(s)	405, 554, 1785, 2035, 2172
MaeIII	GTNAC	4 cut(s)	848, 869, 1847, 2020
MalI	GATC	7 cut(s)	162, 174, 972, 1017, 1236, 1245, 1422
MboI	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
MflI	RGATCY	1 cut(s)	1234
MhlI	GDGCHC	1 cut(s)	1609
MluCI	AATT	8 cut(s)	1041, 1105, 1396, 1428, 1519, 1563, 1590, 2288
Mly113I	GGCGCC	2 cut(s)	80, 153
MmeI	TCCRAC	1 cut(s)	261
Mph1103I	ATGCAT	2 cut(s)	427, 1801
MreI	CGCCGGCG	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	82
MroXI	GAANNNNTTC	2 cut(s)	381, 633
MseI	TTAA	6 cut(s)	1074, 1337, 1578, 1758, 1919, 2109
MslI	CAYNNNNRTG	3 cut(s)	923, 1504, 1794
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	5 cut(s)	83, 123, 1275, 1911, 1940
MvaI	CCWGG	9 cut(s)	74, 769, 993, 1129, 1617, 1653, 1722, 1773, 2052
MvnI	CGCG	3 cut(s)	70, 168, 2080
NaeI	GCCGGC	1 cut(s)	84
NarI	GGCGCC	2 cut(s)	80, 153
NciI	CCSGG	2 cut(s)	1276, 1941
NcoI	CCATGG	2 cut(s)	195, 654
NdeI	CATATG	1 cut(s)	1228
NdeII	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
NgoMIV	GCCGGC	1 cut(s)	82
NheI	GCTAGC	1 cut(s)	2353
NlaIII	CATG	9 cut(s)	199, 256, 584, 658, 748, 922, 1427, 2106, 2233
NlaIV	GGNNCC	6 cut(s)	81, 154, 275, 285, 393, 1224
NmeAIII	GCCGAG	4 cut(s)	95, 181, 484, 1834
NmuCI	GTSAC	2 cut(s)	848, 1847
NsbI	TGCGCA	1 cut(s)	1475
NsiI	ATGCAT	2 cut(s)	427, 1801
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	14
PaeR7I	CTCGAG	1 cut(s)	591
PasI	CCCWGGG	1 cut(s)	1128
PceI	AGGCCT	2 cut(s)	262, 1186
PciSI	GCTCTTC	1 cut(s)	1984
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 153
PdiI	GCCGGC	1 cut(s)	84
PdmI	GAANNNNTTC	2 cut(s)	381, 633
PfeI	GAWTC	8 cut(s)	50, 208, 797, 1119, 1832, 2163, 2241, 2338
PflMI	CCANNNNNTGG	1 cut(s)	1964
PfoI	TCCNGGA	2 cut(s)	991, 2050
PkrI	GCNGC	8 cut(s)	58, 79, 88, 202, 298, 334, 586, 1996
PluTI	GGCGCC	2 cut(s)	83, 156
PmaCI	CACGTG	2 cut(s)	555, 2036
PmlI	CACGTG	2 cut(s)	555, 2036
Ppu21I	YACGTR	3 cut(s)	555, 2036, 2173
Psp6I	CCWGG	9 cut(s)	72, 767, 991, 1127, 1615, 1651, 1720, 1771, 2050
PspCI	CACGTG	2 cut(s)	555, 2036
PspGI	CCWGG	9 cut(s)	72, 767, 991, 1127, 1615, 1651, 1720, 1771, 2050
PspN4I	GGNNCC	6 cut(s)	81, 154, 275, 285, 393, 1224
PspPI	GGNCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
PspXI	VCTCGAGB	1 cut(s)	591
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	1234
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	7 cut(s)	579, 1082, 1510, 1529, 1639, 1884, 2175
RsaNI	GTAC	7 cut(s)	578, 1081, 1509, 1528, 1638, 1883, 2174
RseI	CAYNNNNRTG	3 cut(s)	923, 1504, 1794
SapI	GCTCTTC	1 cut(s)	1984
SaqAI	TTAA	6 cut(s)	1074, 1337, 1578, 1758, 1919, 2109
SatI	GCNGC	8 cut(s)	57, 78, 87, 201, 297, 333, 585, 1995
Sau3AI	GATC	7 cut(s)	160, 172, 970, 1015, 1234, 1243, 1420
Sau96I	GGNCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
SduI	GDGCHC	1 cut(s)	1609
SfaNI	GCATC	8 cut(s)	252, 412, 649, 754, 900, 1261, 1342, 1450
SfcI	CTRYAG	4 cut(s)	237, 663, 835, 1188
SfoI	GGCGCC	2 cut(s)	81, 154
Sfr274I	CTCGAG	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	14
SgrAI	CRCCGGYG	1 cut(s)	82
SinI	GGWCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
SlaI	CTCGAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	3 cut(s)	923, 1504, 1794
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	8 cut(s)	1041, 1105, 1396, 1428, 1519, 1563, 1590, 2288
SseBI	AGGCCT	2 cut(s)	262, 1186
SsiI	CCGC	8 cut(s)	43, 56, 68, 77, 86, 200, 222, 2078
SspDI	GGCGCC	2 cut(s)	79, 152
SspMI	CTAG	3 cut(s)	513, 804, 2354
StuI	AGGCCT	2 cut(s)	262, 1186
StyI	CCWWGG	3 cut(s)	195, 654, 1288
TaiI	ACGT	5 cut(s)	408, 557, 1788, 2038, 2175
TaqI	TCGA	5 cut(s)	14, 592, 1018, 1269, 1392
TasI	AATT	8 cut(s)	1041, 1105, 1396, 1428, 1519, 1563, 1590, 2288
TatI	WGTACW	3 cut(s)	577, 1508, 1882
TauI	GCSGC	4 cut(s)	59, 80, 89, 203
TfiI	GAWTC	8 cut(s)	50, 208, 797, 1119, 1832, 2163, 2241, 2338
Tru1I	TTAA	6 cut(s)	1074, 1337, 1578, 1758, 1919, 2109
Tru9I	TTAA	6 cut(s)	1074, 1337, 1578, 1758, 1919, 2109
TscAI	CASTG	8 cut(s)	241, 321, 831, 1378, 1500, 2211, 2268, 2326
TseFI	GTSAC	2 cut(s)	848, 1847
TseI	GCWGC	4 cut(s)	296, 332, 584, 1994
Tsp45I	GTSAC	2 cut(s)	848, 1847
TspDTI	ATGAA	2 cut(s)	737, 1661
TspGWI	ACGGA	3 cut(s)	963, 1058, 2253
TspRI	CASTG	8 cut(s)	241, 321, 831, 1378, 1500, 2211, 2268, 2326
Van91I	CCANNNNNTGG	1 cut(s)	1964
VpaK11BI	GGWCC	6 cut(s)	283, 476, 748, 1058, 1908, 1967
XapI	RAATTY	3 cut(s)	1105, 1428, 1590
XceI	RCATGY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1135
XhoI	CTCGAG	1 cut(s)	591
XmnI	GAANNNNTTC	2 cut(s)	381, 633
XspI	CTAG	3 cut(s)	513, 804, 2354
Zsp2I	ATGCAT	2 cut(s)	427, 1801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.