Rorug07G0004200

amine oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003041
Physical Location & Seq
Reverse (-)
360854 .. 361348
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0004200.1

Sequence Viewer

Length: 402 bp
ATGTCGGATCCCTACGAGAGAGTGAAAGGAGGCAGATTGACCTTCAAGGACGGGACTTTGGCCACGCGCAGCAAAGCCATCGACAAGAAAAAGAACAAGAAGAAGAAGAAGAAGCTCCTCCTCAACAACCCTAACGTCGACGGTGCCGTTGACTCAGGCTCAGCCGTTGATTTGGAAGGCGACGATGCAATAGCTGCAGCAGAAGCAGCCGGAGCCGGAGCCGGAGCAGTAGCAGAAGAAGAGTCTTACTCTATCGACGCGGCCAAGCGCATGAAGTACGATGAGCTCTTCCCCGTCGAAGCCAAGAAGTTCGGTTACGACCCCAAGGCCATTCAACAAAAGTCCGTCGAGGCTGTCCTAGACGACCGTGTCAAGAAGAAGGCCGACCGCTACTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110
Pfam Domains
Protein Families
Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

133

Amino Acids

14.43

Weight (kDa)

9.16

Isoelectric Point (pI)

24.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 67, 260
AciI CCGC 2 cut(s) 260, 388
AclWI GGATC 2 cut(s) 2, 15
AcoI YGGCCR 2 cut(s) 60, 261
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 2 cut(s) 46, 335
AluBI AGCT 3 cut(s) 115, 194, 286
AluI AGCT 3 cut(s) 115, 194, 286
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 2 cut(s) 2, 15
AoxI GGCC 4 cut(s) 60, 261, 327, 381
ApeKI GCWGC 4 cut(s) 69, 194, 197, 206
AspLEI GCGC 2 cut(s) 69, 270
BalI TGGCCA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 7
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 288
BarI GAAGNNNNNNTAC 2 cut(s) 299, 331
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 4 cut(s) 81, 181, 209, 218
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 131, 149
BcgI CGANNNNNNTGC 2 cut(s) 61, 95
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 5 cut(s) 70, 195, 198, 207, 261
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 5 cut(s) 71, 196, 199, 208, 262
BmiI GGNNCC 4 cut(s) 9, 145, 214, 220
BmsI GCATC 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 233, 265
Bpu1102I GCTNAGC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 168, 174
BseRI GAGGAG 2 cut(s) 107, 110
BseXI GCAGC 4 cut(s) 81, 181, 209, 218
Bsh1236I CGCG 2 cut(s) 67, 260
Bsh1285I CGRYCG 2 cut(s) 367, 388
BshFI GGCC 4 cut(s) 62, 263, 329, 383
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 2 cut(s) 367, 388
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 3 cut(s) 210, 216, 222
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 4 cut(s) 62, 263, 329, 383
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 1 cut(s) 7
Bsp1720I GCTNAGC 1 cut(s) 160
BspACI CCGC 2 cut(s) 260, 388
BspANI GGCC 4 cut(s) 62, 263, 329, 383
BspCNI CTCAG 2 cut(s) 167, 173
BspFNI CGCG 2 cut(s) 67, 260
BspLI GGNNCC 4 cut(s) 9, 145, 214, 220
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 2, 15
BspQI GCTCTTC 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 3 cut(s) 143, 368, 395
Bst6I CTCTTC 2 cut(s) 234, 293
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 154, 160
BstFNI CGCG 2 cut(s) 67, 260
BstHHI GCGC 2 cut(s) 69, 270
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMCI CGRYCG 2 cut(s) 367, 388
BstMWI GCNNNNNNNGC 4 cut(s) 194, 203, 206, 212
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 2 cut(s) 67, 260
BstV1I GCAGC 4 cut(s) 81, 181, 209, 218
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 4 cut(s) 62, 263, 329, 383
CfoI GCGC 2 cut(s) 69, 270
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 271
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 154, 160
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 60, 261
Eam1104I CTCTTC 2 cut(s) 234, 293
EarI CTCTTC 2 cut(s) 234, 293
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 274
FaiI YATR 1 cut(s) 272
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 5 cut(s) 70, 195, 198, 207, 261
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 5 cut(s) 70, 195, 198, 207, 261
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 68, 269
GluI GCNGC 5 cut(s) 70, 195, 198, 207, 261
HaeIII GGCC 4 cut(s) 62, 263, 329, 383
HapII CCGG 3 cut(s) 210, 216, 222
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 69, 270
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 2 cut(s) 67, 268
HinP1I GCGC 2 cut(s) 67, 268
HincII GTYRAC 2 cut(s) 139, 151
HindII GTYRAC 2 cut(s) 139, 151
HinfI GANTC 2 cut(s) 152, 242
HpaII CCGG 3 cut(s) 210, 216, 222
Hpy166II GTNNAC 2 cut(s) 139, 151
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 139, 151
Hpy99I CGWCG 6 cut(s) 140, 143, 185, 260, 299, 350
HpyAV CCTTC 3 cut(s) 52, 170, 373
HpyCH4III ACNGT 3 cut(s) 143, 368, 395
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 188, 197
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 203, 206, 212
HpyF3I CTNAG 2 cut(s) 154, 160
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 2 cut(s) 67, 268
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 293
LmnI GCTCC 4 cut(s) 120, 212, 218, 224
LpnPI CCDG 4 cut(s) 141, 223, 229, 235
Lsp1109I GCAGC 4 cut(s) 81, 181, 209, 218
LweI GCATC 1 cut(s) 175
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 8 cut(s) 112, 115, 118, 121, 248, 251, 280, 388
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 2 cut(s) 146, 251
MnlI CCTC 4 cut(s) 23, 128, 131, 343
Mox20I TGGCCA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 3 cut(s) 210, 216, 222
MvnI CGCG 2 cut(s) 67, 260
MwoI GCNNNNNNNGC 4 cut(s) 194, 203, 206, 212
NdeII GATC 1 cut(s) 7
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 4 cut(s) 9, 145, 214, 220
PciSI GCTCTTC 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 5 cut(s) 71, 196, 199, 208, 262
PleI GAGTC 2 cut(s) 146, 250
PpsI GAGTC 2 cut(s) 146, 250
Psp124BI GAGCTC 1 cut(s) 288
PspN4I GGNNCC 4 cut(s) 9, 145, 214, 220
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SacI GAGCTC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 137
SapI GCTCTTC 1 cut(s) 293
SatI GCNGC 5 cut(s) 70, 195, 198, 207, 261
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 2 cut(s) 146, 251
SduI GDGCHC 1 cut(s) 288
SetI ASST 5 cut(s) 44, 117, 138, 196, 288
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 195
SgrDI CGTCGACG 1 cut(s) 137
SsiI CCGC 2 cut(s) 260, 388
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 1 cut(s) 288
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 3 cut(s) 143, 368, 395
TaiI ACGT 1 cut(s) 138
TaqI TCGA 5 cut(s) 81, 138, 255, 297, 348
TauI GCSGC 1 cut(s) 263
TseI GCWGC 4 cut(s) 69, 194, 197, 206
TspDTI ATGAA 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.