Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Reverse (-)

56712444 .. 56718646

Gene Structure 6203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGGCCTCAGCTTCGAAAAAAGCGACGCCTTCATGTTGCTCCGATTCTGCTTCTTCCATCATTCCTCGCCAGGCCGCGGCGCCTTCTTCAAACGCCGTCGTTTCGGCCGCCGTGGCTCAGGATTGGAGCGTCGCGGCTACCGAGGACCGCCGCGACGATCAGCGCTCCAAGAAGATCGCCATGGCGTCCTTGATTCCTGAACCTTCCGCCAAGAATGCCGCCTCCGCTGCTGGCATCCCGATCATGCTTAGGCCTCAATCAAGGCATCCATTGGAACCTTTATCTGCTGCTGAAATTTCTGTGGCAGTGGCGACTGTCAGGGCAGCTGGAGCAACACCTGAGGTTAGAGATAGTATGCGTTTTGTTGAAGTGGTTCTTCTAGAACCAGAAAAACATGTCGTTGCATTAGCGGATGCATACTTCTTCCCTCCTTTCCAACCCTCATTACTTCCGAGAACCAAAGGTGGACCTATAATACCCACTAAGCTTCCTCCGAGGCGAGCTAGACTTGTTGTTTACAACAAGAAGTCAAATGAGACAAGCACATGGATTGTTGAGCTGTCAGAAGTACATGCAGCTACTCGTGGTGGACATCACAGAGGAAAAGTAATATCATCACAAGTTATCCCTGATGTTCAGCCCCCCATGGATGCTGTGGAATACGCTGAATGTGAAGCTGTTGTGAAAGACTTTCCTCCATTTAGAGATGCTATGAAGAAGAGGGGTGTTGAAGATATGGATCTTGTGATGGTTGATGCCTGGTGTGTTGGTTATCATAGTGAGGCTGATGCTCCTAGCAAAAGACTTGCTAAACCACTGATATTCTGTAGAACTGAGAGTGACTGCCCAATGGAAAATGGTTATGCACGCCCTGTTGAGGGAATCCATATACTTGTTGATATGCAAAGCATGGTGGTGATAGAGTTTGAAGACCGTAAGCTGGTTCCCCTACCTCCAGCCGATCCATTGAGGAACTATACTTCTGGTGAAACAAGAGGTGGTGTTGATCGGAGTGATGTGAAGCCTTTACAAATTGTTCAGGCTGAAGGTCCAAGCTTTCGTGTTGATGGATATTTTGTGGAGTGGCAGAAGTGGAATTTTCGTATTGGATTCACTCCCAGGGAGGGGCTAGTTATATATTCAATTGCGTATGTTGATGGTAGTCGGGGACGAAGGCCTGTAGCCCATAGGTTGAGTTTTGTGGAAATGGTGGTGCCATATGGAGATCCCAATGATCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCCTTGGTAAAAATGCACATTCCCTAAAGAAGGGGTGTGATTGTTTGGGCTATATCAAATACTTTGATGCCCATTTTACAAACTTTACTGGAGGTGTTGAGACAATTGAGAATTGTGTATGTTTGCACGAAGAGGACCATGGACTTCTGTGGAAGCACCAGGACTGGAGAACAGGTTTAGCAGAAGTGCGCAGGTCAAGACGGCTGACAGTTTCTTTTATATGTACTGTGGCCAATTATGAATACGGATTCTTCTGGCACTTTTATCAGGATGGAAAGATTGAAGCTGAAGTTAAACTTACTGGAATACTCAGCTTAGGAGCACTACAACCTGGAGAAGTCCGAAAATATGGTACTGTTATTGCACCGGGGCTATATGCACCAGTTCATCAGCACTTTTTTGTTGCTCGTATGGATATGGCTGTTGATTGCAAACCTGGGGAAACATACAATCAGGTTGTGGAGCTAGATGTTAAAGTGGAACAACCTGGAGACAATAATGTCCACAGCAATGCATTTTATGCTGAAGAGAGACTTCTTAGAACTGAATCGGAGGCAATGCGAGACTGTAATCCCTTGTCTGCCCGCCATTGGATTGTAAGGAACACACGAACTGTTAACAGAACTGGACAGTTAACAGGCTACAAGCTTGTACCTGGTTCAAATTGCTTGCCATTAGCTGGTTCTGAGGCCAAATTTTTGAGAAGAGCTGCTTTCTTGAAACATAATCTTTGGGTTACACCATATGCACGTGATGAGATGTTTCCTGGAGGAGAATTTCCCAACCAAAACCCACGGGTCGGTGAAGGATTGGCTACATGGGTTAAGCAGAATCGATCTCTTGAAGAAACTGACATTGTCCTTTGGTATGTATTTGGGATAACTCACGTTCCTCGGTTAGAAGACTGGCCTGTCATGCCAGTGGAGCGCATTGGCTTTGTGCTTATGCCTCATGGATTCTTCAACTGCTCTCCTGCAGTGGATGTTCCTCCCAGTGTCTGTGAATTGGAAGTCAAAGAAAATGATGTCAAAGACAATGGGGTTGCCAAGCCAATTCAGACTGGGTTGATGGCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

785

Amino Acids

87.34

Weight (kDa)

6.45

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	214 - 317	8.1e-28	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	343 - 751	9.4e-153	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1775, 2186
Acc16I	TGCGCA	1 cut(s)	1466
Acc36I	ACCTGC	1 cut(s)	1458
AccB1I	GGYRCC	2 cut(s)	79, 1213
AccB7I	CCANNNNNTGG	1 cut(s)	1955
AccII	CGCG	3 cut(s)	77, 134, 153
AclWI	GGATC	4 cut(s)	747, 956, 1220, 1229
AcoI	YGGCCR	2 cut(s)	105, 1506
AcsI	RAATTY	4 cut(s)	294, 1096, 1970, 2051
AcuI	CTGAAG	3 cut(s)	1065, 1584, 1821
AcvI	CACGTG	1 cut(s)	2027
AcyI	GRCGYC	3 cut(s)	26, 80, 185
AfaI	GTAC	4 cut(s)	570, 1501, 1630, 1929
AfeI	AGCGCT	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	394
AjnI	CCWGG	9 cut(s)	69, 758, 1118, 1434, 1606, 1711, 1762, 1930, 2041
AjuI	GAANNNNNNNTTGG	2 cut(s)	1263, 1295
Alw21I	GWGCWC	1 cut(s)	1600
Alw26I	GTCTC	5 cut(s)	530, 1370, 1761, 1801, 1833
AlwI	GGATC	4 cut(s)	747, 956, 1220, 1229
AlwNI	CAGNNNCTG	1 cut(s)	2274
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	9 cut(s)	3, 72, 105, 251, 1175, 1276, 1506, 1965, 2183
ApeKI	GCWGC	5 cut(s)	227, 287, 323, 575, 1985
ApoI	RAATTY	4 cut(s)	294, 1096, 1970, 2051
Asp700I	GAANNNNTTC	1 cut(s)	372
AspLEI	GCGC	4 cut(s)	82, 165, 1467, 2205
AspS9I	GGNCC	4 cut(s)	145, 467, 1049, 1411
AsuC2I	CCSGG	1 cut(s)	1644
AsuHPI	GGTGA	3 cut(s)	928, 998, 2090
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	4 cut(s)	145, 467, 1049, 1411
AxyI	CCTNAGG	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	1508
BanI	GGYRCC	2 cut(s)	79, 1213
BauI	CACGAG	1 cut(s)	582
BbrPI	CACGTG	1 cut(s)	2027
BbsI	GAAGAC	2 cut(s)	936, 2184
Bbv12I	GWGCWC	1 cut(s)	1600
BbvCI	CCTCAGC	1 cut(s)	7
BbvI	GCAGC	5 cut(s)	214, 274, 335, 587, 1972
BccI	CCATC	7 cut(s)	65, 742, 1061, 1151, 1268, 1541, 2338
BceAI	ACGGC	3 cut(s)	80, 95, 1493
BciT130I	CCWGG	9 cut(s)	71, 760, 1120, 1436, 1608, 1713, 1764, 1932, 2043
BcnI	CCSGG	1 cut(s)	1644
BcoDI	GTCTC	5 cut(s)	530, 1370, 1761, 1801, 1833
BfaI	CTAG	5 cut(s)	380, 504, 795, 1130, 1742
BfmI	CTRYAG	3 cut(s)	826, 1179, 2250
BfoI	RGCGCY	2 cut(s)	83, 166
BfuAI	ACCTGC	1 cut(s)	1458
BglI	GCCNNNNNGGC	1 cut(s)	113
Bme18I	GGWCC	4 cut(s)	145, 467, 1049, 1411
BmgT120I	GGNCC	4 cut(s)	145, 467, 1049, 1411
BmiI	GGNNCC	4 cut(s)	81, 276, 945, 1215
BmrI	ACTGGG	2 cut(s)	2262, 2346
BmsI	GCATC	9 cut(s)	243, 274, 403, 640, 697, 745, 778, 1252, 1333
BmuI	ACTGGG	2 cut(s)	2262, 2346
BpiI	GAAGAC	2 cut(s)	936, 2184
BpmI	CTGGAG	7 cut(s)	348, 939, 1386, 1462, 1629, 1785, 2064
Bpu10I	CCTNAGC	4 cut(s)	7, 117, 248, 1591
Bpu14I	TTCGAA	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	1644
Bsa29I	ATCGAT	1 cut(s)	2110
BsaAI	YACGTR	1 cut(s)	2027
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	3 cut(s)	26, 80, 185
BsaXI	ACNNNNNCTCC	2 cut(s)	1435, 1465
Bse1I	ACTGG	9 cut(s)	1369, 1445, 1582, 1658, 1906, 2186, 2195, 2268, 2341
Bse21I	CCTNAGG	1 cut(s)	339
Bse3DI	GCAATG	2 cut(s)	1792, 1839
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	9 cut(s)	71, 760, 1120, 1436, 1608, 1713, 1764, 1932, 2043
BseCI	ATCGAT	1 cut(s)	2110
BseGI	GGATG	6 cut(s)	234, 265, 418, 655, 1552, 2263
BseJI	GATNNNNATC	1 cut(s)	738
BseMI	GCAATG	2 cut(s)	1792, 1839
BseMII	CTCAG	6 cut(s)	21, 131, 330, 825, 1600, 1953
BseNI	ACTGG	9 cut(s)	1369, 1445, 1582, 1658, 1906, 2186, 2195, 2268, 2341
BseRI	GAGGAG	1 cut(s)	2061
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	214, 274, 335, 587, 1972
BseYI	CCCAGC	1 cut(s)	1265
Bsh1236I	CGCG	3 cut(s)	77, 134, 153
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	9 cut(s)	5, 74, 107, 253, 1177, 1278, 1508, 1967, 2185
BshNI	GGYRCC	2 cut(s)	79, 1213
BshVI	ATCGAT	1 cut(s)	2110
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	1600
BsiSI	CCGG	1 cut(s)	1643
BslFI	GGGAC	1 cut(s)	1182
BsmAI	GTCTC	5 cut(s)	530, 1370, 1761, 1801, 1833
BsmFI	GGGAC	1 cut(s)	1182
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	9 cut(s)	5, 74, 107, 253, 1177, 1278, 1508, 1967, 2185
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	1600
Bsp143I	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
Bsp19I	CCATGG	3 cut(s)	180, 645, 1414
BspANI	GGCC	9 cut(s)	5, 74, 107, 253, 1177, 1278, 1508, 1967, 2185
BspCNI	CTCAG	6 cut(s)	20, 130, 331, 826, 1599, 1954
BspDI	ATCGAT	1 cut(s)	2110
BspFNI	CGCG	3 cut(s)	77, 134, 153
BspLI	GGNNCC	4 cut(s)	81, 276, 945, 1215
BspMAI	CTGCAG	1 cut(s)	2254
BspMI	ACCTGC	1 cut(s)	1458
BspPI	GGATC	4 cut(s)	747, 956, 1220, 1229
BspQI	GCTCTTC	1 cut(s)	1975
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	2 cut(s)	79, 1213
BsrDI	GCAATG	2 cut(s)	1792, 1839
BsrI	ACTGG	9 cut(s)	1369, 1445, 1582, 1658, 1906, 2186, 2195, 2268, 2341
BssMI	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
BssNI	GRCGYC	3 cut(s)	26, 80, 185
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	4 cut(s)	180, 645, 1279, 1414
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	9 cut(s)	71, 760, 1120, 1436, 1608, 1713, 1764, 1932, 2043
Bst4CI	ACNGT	8 cut(s)	316, 935, 1486, 1504, 1633, 1844, 1891, 1908
Bst6I	CTCTTC	4 cut(s)	713, 1401, 1797, 1975
BstACI	GRCGYC	3 cut(s)	26, 80, 185
BstAPI	GCANNNNNTGC	1 cut(s)	1796
BstBAI	YACGTR	1 cut(s)	2027
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	232, 501, 868, 1861, 1946
BstDSI	CCRYGG	6 cut(s)	75, 111, 180, 645, 1414, 2069
BstENI	CCTNNNNNAGG	1 cut(s)	1304
BstF5I	GGATG	6 cut(s)	234, 265, 418, 655, 1552, 2263
BstFNI	CGCG	3 cut(s)	77, 134, 153
BstH2I	RGCGCY	2 cut(s)	83, 166
BstHHI	GCGC	4 cut(s)	82, 165, 1467, 2205
BstKTI	GATC	9 cut(s)	160, 177, 243, 742, 964, 1009, 1228, 1237, 2114
BstMAI	GTCTC	5 cut(s)	530, 1370, 1761, 1801, 1833
BstMBI	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	9 cut(s)	113, 215, 224, 227, 329, 1262, 1796, 2191, 2200
BstNI	CCWGG	9 cut(s)	71, 760, 1120, 1436, 1608, 1713, 1764, 1932, 2043
BstNSI	RCATGY	2 cut(s)	398, 575
BstSFI	CTRYAG	3 cut(s)	826, 1179, 2250
BstUI	CGCG	3 cut(s)	77, 134, 153
BstV1I	GCAGC	5 cut(s)	214, 274, 335, 587, 1972
BstV2I	GAAGAC	2 cut(s)	936, 2184
BstX2I	RGATCY	2 cut(s)	739, 1225
BstYI	RGATCY	2 cut(s)	739, 1225
BstZI	CGGCCG	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	2110
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	9 cut(s)	5, 74, 107, 253, 1177, 1278, 1508, 1967, 2185
BsuTUI	ATCGAT	1 cut(s)	2110
BtgI	CCRYGG	6 cut(s)	75, 111, 180, 645, 1414, 2069
BtsCI	GGATG	6 cut(s)	234, 265, 418, 655, 1552, 2263
BtsI	GCAGTG	2 cut(s)	312, 2259
BtsIMutI	CAGTG	5 cut(s)	312, 815, 2202, 2259, 2275
BveI	ACCTGC	1 cut(s)	1458
Cac8I	GCNNGC	5 cut(s)	232, 501, 868, 1861, 1946
CaiI	CAGNNNCTG	1 cut(s)	2274
CfoI	GCGC	4 cut(s)	82, 165, 1467, 2205
Cfr13I	GGNCC	4 cut(s)	145, 467, 1049, 1411
Cfr42I	CCGCGG	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	2110
CseI	GACGC	3 cut(s)	34, 118, 174
CsiI	ACCWGGT	1 cut(s)	1930
Csp6I	GTAC	4 cut(s)	569, 1500, 1629, 1928
CviQI	GTAC	4 cut(s)	569, 1500, 1629, 1928
DinI	GGCGCC	1 cut(s)	81
DpnI	GATC	9 cut(s)	159, 176, 242, 741, 963, 1008, 1227, 1236, 2113
DpnII	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
DrdI	GACNNNNNNGTC	2 cut(s)	1775, 2186
DseDI	GACNNNNNNGTC	2 cut(s)	1775, 2186
EaeI	YGGCCR	2 cut(s)	105, 1506
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	4 cut(s)	713, 1401, 1797, 1975
EarI	CTCTTC	4 cut(s)	713, 1401, 1797, 1975
EciI	GGCGGA	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	4 cut(s)	180, 645, 1279, 1414
Eco147I	AGGCCT	2 cut(s)	253, 1177
Eco47I	GGWCC	4 cut(s)	145, 467, 1049, 1411
Eco47III	AGCGCT	1 cut(s)	164
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	3 cut(s)	1065, 1584, 1821
Eco72I	CACGTG	1 cut(s)	2027
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	1304
EcoRII	CCWGG	9 cut(s)	69, 758, 1118, 1434, 1606, 1711, 1762, 1930, 2041
EcoT14I	CCWWGG	4 cut(s)	180, 645, 1279, 1414
EcoT22I	ATGCAT	2 cut(s)	418, 1792
EgeI	GGCGCC	1 cut(s)	81
EheI	GGCGCC	1 cut(s)	81
ErhI	CCWWGG	4 cut(s)	180, 645, 1279, 1414
FaqI	GGGAC	1 cut(s)	1182
FauI	CCCGC	1 cut(s)	1868
FauNDI	CATATG	2 cut(s)	1219, 2020
FokI	GGATG	6 cut(s)	221, 252, 425, 662, 1559, 2270
FspBI	CTAG	5 cut(s)	380, 504, 795, 1130, 1742
FspI	TGCGCA	1 cut(s)	1466
GlaI	GCGC	4 cut(s)	81, 164, 1466, 2204
GsaI	CCCAGC	1 cut(s)	1269
GsuI	CTGGAG	7 cut(s)	348, 939, 1386, 1462, 1629, 1785, 2064
HaeII	RGCGCY	2 cut(s)	83, 166
HaeIII	GGCC	9 cut(s)	5, 74, 107, 253, 1177, 1278, 1508, 1967, 2185
HapII	CCGG	1 cut(s)	1643
HgaI	GACGC	3 cut(s)	34, 118, 174
HhaI	GCGC	4 cut(s)	82, 165, 1467, 2205
Hin1I	GRCGYC	3 cut(s)	26, 80, 185
Hin6I	GCGC	4 cut(s)	80, 163, 1465, 2203
HinP1I	GCGC	4 cut(s)	80, 163, 1465, 2203
HincII	GTYRAC	2 cut(s)	1894, 1911
HindII	GTYRAC	2 cut(s)	1894, 1911
HindIII	AAGCTT	4 cut(s)	485, 1054, 1922, 2351
HinfI	GANTC	8 cut(s)	44, 193, 882, 1110, 1524, 1823, 2107, 2232
HpaI	GTTAAC	2 cut(s)	1894, 1911
HpaII	CCGG	1 cut(s)	1643
HphI	GGTGA	3 cut(s)	928, 998, 2090
Hpy166II	GTNNAC	6 cut(s)	467, 517, 590, 1780, 1894, 1911
Hpy188I	TCNGA	9 cut(s)	43, 453, 495, 565, 1011, 1619, 1828, 1963, 2334
Hpy188III	TCNNGA	8 cut(s)	119, 197, 238, 380, 1473, 1544, 1993, 2117
Hpy8I	GTNNAC	6 cut(s)	467, 517, 590, 1780, 1894, 1911
Hpy99I	CGWCG	4 cut(s)	28, 101, 134, 158
HpyAV	CCTTC	7 cut(s)	39, 93, 213, 1040, 1167, 1300, 2075
HpyCH4III	ACNGT	8 cut(s)	316, 935, 1486, 1504, 1633, 1844, 1891, 1908
HpyCH4IV	ACGT	2 cut(s)	2026, 2163
HpyF10VI	GCNNNNNNNGC	9 cut(s)	113, 215, 224, 227, 329, 1262, 1796, 2191, 2200
HpySE526I	ACGT	2 cut(s)	2026, 2163
Hsp92I	GRCGYC	3 cut(s)	26, 80, 185
HspAI	GCGC	4 cut(s)	80, 163, 1465, 2203
KasI	GGCGCC	1 cut(s)	79
KspAI	GTTAAC	2 cut(s)	1894, 1911
KspI	CCGCGG	1 cut(s)	78
Kzo9I	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
LguI	GCTCTTC	1 cut(s)	1975
LmnI	GCTCC	8 cut(s)	44, 126, 170, 329, 796, 1595, 1738, 2200
Lsp1109I	GCAGC	5 cut(s)	214, 274, 335, 587, 1972
LweI	GCATC	9 cut(s)	243, 274, 403, 640, 697, 745, 778, 1252, 1333
MabI	ACCWGGT	1 cut(s)	1930
MaeI	CTAG	5 cut(s)	380, 504, 795, 1130, 1742
MaeII	ACGT	2 cut(s)	2026, 2163
MaeIII	GTNAC	2 cut(s)	839, 2011
MalI	GATC	9 cut(s)	159, 176, 242, 741, 963, 1008, 1227, 1236, 2113
MboI	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
MfeI	CAATTG	2 cut(s)	1143, 1380
MflI	RGATCY	2 cut(s)	739, 1225
MhlI	GDGCHC	1 cut(s)	1600
MlsI	TGGCCA	1 cut(s)	1508
MluNI	TGGCCA	1 cut(s)	1508
Mly113I	GGCGCC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	460
Mox20I	TGGCCA	1 cut(s)	1508
Mph1103I	ATGCAT	2 cut(s)	418, 1792
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	1508
MseI	TTAA	5 cut(s)	1569, 1749, 1893, 1910, 2100
MslI	CAYNNNNRTG	3 cut(s)	914, 1785, 2195
Msp20I	TGGCCA	1 cut(s)	1508
MspA1I	CMGCKG	3 cut(s)	77, 227, 326
MspI	CCGG	1 cut(s)	1643
MunI	CAATTG	2 cut(s)	1143, 1380
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	9 cut(s)	71, 760, 1120, 1436, 1608, 1713, 1764, 1932, 2043
MvnI	CGCG	3 cut(s)	77, 134, 153
MwoI	GCNNNNNNNGC	9 cut(s)	113, 215, 224, 227, 329, 1262, 1796, 2191, 2200
NarI	GGCGCC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	1644
NcoI	CCATGG	3 cut(s)	180, 645, 1414
NdeI	CATATG	2 cut(s)	1219, 2020
NdeII	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
NlaIV	GGNNCC	4 cut(s)	81, 276, 945, 1215
NmuCI	GTSAC	1 cut(s)	839
NsbI	TGCGCA	1 cut(s)	1466
NsiI	ATGCAT	2 cut(s)	418, 1792
NspI	RCATGY	2 cut(s)	398, 575
NspV	TTCGAA	1 cut(s)	14
PasI	CCCWGGG	1 cut(s)	1119
PceI	AGGCCT	2 cut(s)	253, 1177
PciI	ACATGT	1 cut(s)	394
PciSI	GCTCTTC	1 cut(s)	1975
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 138
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	8 cut(s)	44, 193, 882, 1110, 1524, 1823, 2107, 2232
PflFI	GACNNNGTC	1 cut(s)	2132
PflMI	CCANNNNNTGG	1 cut(s)	1955
PfoI	TCCNGGA	1 cut(s)	2041
PluTI	GGCGCC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	2027
PmlI	CACGTG	1 cut(s)	2027
Ppu21I	YACGTR	1 cut(s)	2027
PscI	ACATGT	1 cut(s)	394
Psp6I	CCWGG	9 cut(s)	69, 758, 1118, 1434, 1606, 1711, 1762, 1930, 2041
PspCI	CACGTG	1 cut(s)	2027
PspFI	CCCAGC	1 cut(s)	1265
PspGI	CCWGG	9 cut(s)	69, 758, 1118, 1434, 1606, 1711, 1762, 1930, 2041
PspN4I	GGNNCC	4 cut(s)	81, 276, 945, 1215
PspPI	GGNCC	4 cut(s)	145, 467, 1049, 1411
PstI	CTGCAG	1 cut(s)	2254
PstNI	CAGNNNCTG	1 cut(s)	2274
PsuI	RGATCY	2 cut(s)	739, 1225
PsyI	GACNNNGTC	1 cut(s)	2132
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	4 cut(s)	570, 1501, 1630, 1929
RsaNI	GTAC	4 cut(s)	569, 1500, 1629, 1928
RseI	CAYNNNNRTG	3 cut(s)	914, 1785, 2195
SacII	CCGCGG	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	1975
SaqAI	TTAA	5 cut(s)	1569, 1749, 1893, 1910, 2100
Sau3AI	GATC	9 cut(s)	157, 174, 240, 739, 961, 1006, 1225, 1234, 2111
Sau96I	GGNCC	4 cut(s)	145, 467, 1049, 1411
SduI	GDGCHC	1 cut(s)	1600
SexAI	ACCWGGT	1 cut(s)	1930
SfaNI	GCATC	9 cut(s)	243, 274, 403, 640, 697, 745, 778, 1252, 1333
SfcI	CTRYAG	3 cut(s)	826, 1179, 2250
SfoI	GGCGCC	1 cut(s)	81
Sfr303I	CCGCGG	1 cut(s)	78
SfuI	TTCGAA	1 cut(s)	14
SgrBI	CCGCGG	1 cut(s)	78
SinI	GGWCC	4 cut(s)	145, 467, 1049, 1411
SmiMI	CAYNNNNRTG	3 cut(s)	914, 1785, 2195
SseBI	AGGCCT	2 cut(s)	253, 1177
SspDI	GGCGCC	1 cut(s)	79
SspMI	CTAG	5 cut(s)	380, 504, 795, 1130, 1742
StuI	AGGCCT	2 cut(s)	253, 1177
StyI	CCWWGG	4 cut(s)	180, 645, 1279, 1414
TaaI	ACNGT	8 cut(s)	316, 935, 1486, 1504, 1633, 1844, 1891, 1908
TaiI	ACGT	2 cut(s)	2029, 2166
TaqI	TCGA	2 cut(s)	14, 2110
TatI	WGTACW	2 cut(s)	568, 1499
TauI	GCSGC	6 cut(s)	77, 80, 110, 137, 153, 221
TfiI	GAWTC	8 cut(s)	44, 193, 882, 1110, 1524, 1823, 2107, 2232
Tru1I	TTAA	5 cut(s)	1569, 1749, 1893, 1910, 2100
Tru9I	TTAA	5 cut(s)	1569, 1749, 1893, 1910, 2100
TscAI	CASTG	5 cut(s)	312, 822, 2202, 2259, 2275
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	5 cut(s)	227, 287, 323, 575, 1985
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	4 cut(s)	21, 728, 1530, 1652
TspGWI	ACGGA	1 cut(s)	1536
TspRI	CASTG	5 cut(s)	312, 822, 2202, 2259, 2275
Tth111I	GACNNNGTC	1 cut(s)	2132
Van91I	CCANNNNNTGG	1 cut(s)	1955
VpaK11BI	GGWCC	4 cut(s)	145, 467, 1049, 1411
XagI	CCTNNNNNAGG	1 cut(s)	1304
XapI	RAATTY	4 cut(s)	294, 1096, 1970, 2051
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	2 cut(s)	398, 575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	5 cut(s)	380, 504, 795, 1130, 1742
Zsp2I	ATGCAT	2 cut(s)	418, 1792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.